Wall clock time and date at job start Thu Mar 4 2021 17:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28474 * 124.88632 * 2 1 4 4 C 1.31802 * 110.07213 * 180.30240 * 3 2 1 5 5 C 1.47718 * 126.51816 * 179.71808 * 4 3 2 6 6 O 1.21569 * 119.99828 * 180.02562 * 5 4 3 7 7 N 1.34772 * 119.99781 * 0.02562 * 5 4 3 8 8 C 1.46497 * 120.00121 * 179.97438 * 7 5 4 9 9 C 1.52994 * 109.47572 * 180.02562 * 8 7 5 10 10 F 1.39905 * 112.84816 * 316.19803 * 9 8 7 11 11 C 1.53781 * 113.61666 * 87.50094 * 9 8 7 12 12 C 1.53780 * 87.08065 * 89.11870 * 11 9 8 13 13 H 1.08999 * 113.69022 * 270.87328 * 12 11 9 14 14 C 1.53002 * 113.61565 * 139.98486 * 12 11 9 15 15 O 1.42892 * 109.47338 * 87.50127 * 14 12 11 16 16 C 1.53773 * 87.08071 * 25.43374 * 12 11 9 17 17 C 1.41500 * 106.96786 * 359.72426 * 4 3 2 18 18 C 1.35033 * 124.88239 * 179.82329 * 2 1 3 19 19 C 1.50699 * 126.38710 * 359.96508 * 18 2 1 20 20 O 1.42892 * 109.47249 * 329.71631 * 19 18 2 21 21 Si 1.86298 * 109.47032 * 209.71016 * 19 18 2 22 22 H 1.09006 * 109.47035 * 270.17563 * 1 2 3 23 23 H 1.08999 * 109.47226 * 30.17270 * 1 2 3 24 24 H 1.08994 * 109.47259 * 150.17709 * 1 2 3 25 25 H 0.97003 * 120.00333 * 0.02562 * 7 5 4 26 26 H 1.09006 * 109.47047 * 300.00287 * 8 7 5 27 27 H 1.09003 * 109.47059 * 59.99672 * 8 7 5 28 28 H 1.09001 * 113.61686 * 203.66615 * 11 9 8 29 29 H 1.09003 * 113.61574 * 334.57053 * 11 9 8 30 30 H 1.09000 * 109.46965 * 207.50539 * 14 12 11 31 31 H 1.09001 * 109.46672 * 327.49982 * 14 12 11 32 32 H 0.96701 * 113.99799 * 180.02562 * 15 14 12 33 33 H 1.09005 * 113.61326 * 220.01904 * 16 12 11 34 34 H 1.09001 * 113.69445 * 89.13020 * 16 12 11 35 35 H 1.08001 * 127.25237 * 180.02562 * 17 4 3 36 36 H 1.09004 * 109.46453 * 89.71699 * 19 18 2 37 37 H 0.96703 * 114.00176 * 299.99748 * 20 19 18 38 38 H 1.48506 * 109.99834 * 58.68765 * 21 19 18 39 39 H 1.48502 * 110.00011 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1998 1.0539 0.0000 4 6 3.4740 0.7169 -0.0065 5 6 4.6273 1.6398 -0.0146 6 8 5.7597 1.1976 -0.0206 7 7 4.4242 2.9721 -0.0152 8 6 5.5679 3.8875 -0.0227 9 6 5.0649 5.3324 -0.0212 10 9 4.0024 5.5386 -0.9077 11 6 4.8123 5.8954 1.3874 12 6 6.2812 6.3506 1.3833 13 1 6.9732 5.6006 1.7662 14 6 6.4967 7.7312 2.0068 15 8 6.6870 7.5929 3.4162 16 6 6.1871 6.3756 -0.1514 17 6 3.5272 -0.6971 -0.0045 18 6 2.2372 -1.1077 0.0034 19 6 1.7533 -2.5349 0.0086 20 8 0.4990 -2.6101 0.6888 21 14 2.9991 -3.6098 0.8821 22 1 -0.3633 0.0032 1.0277 23 1 -0.3633 0.8884 -0.5165 24 1 -0.3633 -0.8915 -0.5110 25 1 3.5206 3.3250 -0.0101 26 1 6.1775 3.7145 0.8643 27 1 6.1678 3.7122 -0.9157 28 1 4.0997 6.7200 1.4068 29 1 4.5948 5.1290 2.1314 30 1 7.3783 8.1957 1.5649 31 1 5.6236 8.3556 1.8175 32 1 6.8294 8.4305 3.8779 33 1 7.0796 5.9970 -0.6497 34 1 5.8507 7.3310 -0.5541 35 1 4.4108 -1.3181 -0.0080 36 1 1.6314 -2.8808 -1.0179 37 1 0.5327 -2.3170 1.6097 38 1 3.1981 -3.1290 2.2731 39 1 2.5339 -5.0201 0.8935 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16500644_13259642.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 17:49:31 Heat of formation + Delta-G solvation = -60.093442 kcal Electronic energy + Delta-G solvation = -24432.052813 eV Core-core repulsion = 20486.492686 eV Total energy + Delta-G solvation = -3945.560127 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 300.132 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.77288 -43.87720 -40.77295 -39.90671 -38.17717 -37.24405 -35.63782 -34.43750 -32.69690 -30.30832 -28.62447 -27.30498 -27.02431 -26.48606 -24.03434 -22.82449 -22.22014 -21.09234 -20.25496 -19.22926 -18.26041 -17.87942 -17.67245 -17.64727 -17.11188 -16.95419 -16.65063 -16.20283 -15.99659 -15.80406 -15.77263 -15.54611 -14.95869 -14.88995 -14.74598 -14.37216 -14.08793 -13.87682 -13.64074 -13.42740 -13.37813 -12.81939 -12.69621 -12.37604 -12.29810 -12.13538 -12.00833 -11.61775 -11.39813 -11.31473 -11.09263 -10.83377 -10.43347 -10.11106 -10.00129 -4.89103 0.38236 0.79989 1.20095 1.51785 1.67123 1.90333 1.98852 2.23354 2.99860 3.07898 3.09795 3.21562 3.23538 3.30535 3.35252 3.47178 3.91120 3.94718 4.25449 4.27401 4.33150 4.35746 4.36630 4.42445 4.46979 4.52300 4.59586 4.62462 4.64872 4.67435 4.67997 4.72070 4.90173 4.99146 5.16885 5.24755 5.32203 5.64330 6.21617 6.27938 6.75198 6.88358 6.99277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.264 5.264 3 N -0.268 5.268 4 C -0.042 4.042 5 C 0.606 3.394 6 O -0.559 6.559 7 N -0.710 5.710 8 C 0.119 3.881 9 C 0.077 3.923 10 F -0.208 7.208 11 C -0.145 4.145 12 C -0.108 4.108 13 H 0.101 0.899 14 C 0.084 3.916 15 O -0.597 6.597 16 C -0.131 4.131 17 C -0.184 4.184 18 C -0.012 4.012 19 C -0.045 4.045 20 O -0.537 6.537 21 Si 0.784 3.216 22 H 0.101 0.899 23 H 0.100 0.900 24 H 0.118 0.882 25 H 0.414 0.586 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.101 0.899 29 H 0.077 0.923 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.397 0.603 33 H 0.100 0.900 34 H 0.112 0.888 35 H 0.185 0.815 36 H 0.146 0.854 37 H 0.388 0.612 38 H -0.294 1.294 39 H -0.283 1.283 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.788 1.949 -0.172 2.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.053 5.053 3 N -0.107 5.107 4 C -0.200 4.200 5 C 0.392 3.608 6 O -0.436 6.436 7 N -0.362 5.362 8 C -0.005 4.005 9 C 0.058 3.942 10 F -0.188 7.188 11 C -0.182 4.182 12 C -0.126 4.126 13 H 0.119 0.881 14 C 0.007 3.993 15 O -0.406 6.406 16 C -0.169 4.169 17 C -0.212 4.212 18 C -0.138 4.138 19 C -0.155 4.155 20 O -0.345 6.345 21 Si 0.687 3.313 22 H 0.119 0.881 23 H 0.119 0.881 24 H 0.136 0.864 25 H 0.250 0.750 26 H 0.114 0.886 27 H 0.103 0.897 28 H 0.120 0.880 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.247 0.753 33 H 0.119 0.881 34 H 0.130 0.870 35 H 0.202 0.798 36 H 0.164 0.836 37 H 0.238 0.762 38 H -0.221 1.221 39 H -0.210 1.210 Dipole moment (debyes) X Y Z Total from point charges -1.987 1.214 -0.257 2.343 hybrid contribution -0.888 0.718 0.767 1.376 sum -2.875 1.932 0.510 3.501 Atomic orbital electron populations 1.22617 0.70715 1.06729 1.06066 1.45713 1.09024 1.01905 1.48696 1.73489 1.02865 1.14893 1.19406 1.21758 0.90768 0.94570 1.12870 1.16995 0.86601 0.81640 0.75573 1.90792 1.23566 1.77595 1.51688 1.45634 1.11117 1.05068 1.74393 1.21740 0.88711 0.85364 1.04674 1.22668 0.86631 0.94993 0.89883 1.92841 1.59099 1.95828 1.71033 1.23731 0.98247 1.01849 0.94413 1.22366 0.96736 0.98361 0.95155 0.88078 1.22192 1.00635 0.95581 0.80920 1.86437 1.95532 1.37854 1.20761 1.23589 0.98177 0.99267 0.95885 1.21732 0.97557 0.93233 1.08689 1.22229 0.90948 0.92129 1.08450 1.24876 0.93637 0.91901 1.05081 1.86578 1.29458 1.88486 1.29960 0.93213 0.83776 0.74770 0.79548 0.88100 0.88144 0.86369 0.74985 0.88636 0.89655 0.88015 0.90474 0.91905 0.92406 0.75274 0.88128 0.86997 0.79823 0.83612 0.76193 1.22104 1.20955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.43 10.12 127.77 1.29 0.86 16 2 N -0.26 -0.43 3.70 -355.92 -1.32 -1.74 16 3 N -0.27 -1.67 11.67 -48.17 -0.56 -2.24 16 4 C -0.04 -0.34 7.13 42.46 0.30 -0.03 16 5 C 0.61 6.04 7.82 86.75 0.68 6.72 16 6 O -0.56 -8.43 16.93 -3.93 -0.07 -8.50 16 7 N -0.71 -3.90 5.45 -466.11 -2.54 -6.44 16 8 C 0.12 0.28 5.27 86.38 0.45 0.73 16 9 C 0.08 0.00 1.91 -10.27 -0.02 -0.02 16 10 F -0.21 -0.94 16.61 44.97 0.75 -0.19 16 11 C -0.14 0.13 7.06 31.12 0.22 0.35 16 12 C -0.11 0.25 3.66 -10.27 -0.04 0.21 16 13 H 0.10 -0.10 7.72 -2.39 -0.02 -0.12 16 14 C 0.08 -0.28 6.89 71.98 0.50 0.22 16 15 O -0.60 -0.12 13.66 -148.98 -2.03 -2.16 16 16 C -0.13 0.51 7.12 31.12 0.22 0.73 16 17 C -0.18 -0.74 9.35 22.41 0.21 -0.53 16 18 C -0.01 -0.01 6.18 41.40 0.26 0.25 16 19 C -0.04 0.19 2.87 71.24 0.20 0.39 16 20 O -0.54 2.30 10.42 -148.98 -1.55 0.75 16 21 Si 0.78 -2.69 31.23 68.60 2.14 -0.55 16 22 H 0.10 -0.87 8.14 -2.38 -0.02 -0.89 16 23 H 0.10 -0.65 8.14 -2.39 -0.02 -0.67 16 24 H 0.12 -0.87 6.78 -2.39 -0.02 -0.88 16 25 H 0.41 1.79 7.75 -92.71 -0.72 1.07 16 26 H 0.10 0.18 7.39 -2.38 -0.02 0.16 16 27 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 28 H 0.10 -0.16 7.90 -2.39 -0.02 -0.18 16 29 H 0.08 0.05 8.10 -2.39 -0.02 0.03 16 30 H 0.06 -0.36 8.14 -2.39 -0.02 -0.38 16 31 H 0.06 -0.30 7.84 -2.39 -0.02 -0.32 16 32 H 0.40 -3.20 9.12 -74.06 -0.68 -3.88 16 33 H 0.10 -0.58 8.10 -2.38 -0.02 -0.60 16 34 H 0.11 -0.61 8.10 -2.39 -0.02 -0.63 16 35 H 0.18 0.05 7.03 -2.91 -0.02 0.03 16 36 H 0.15 -1.04 7.96 -2.38 -0.02 -1.06 16 37 H 0.39 -3.34 8.70 -74.06 -0.64 -3.98 16 38 H -0.29 -0.92 7.11 99.48 0.71 -0.21 16 39 H -0.28 -0.64 7.11 99.48 0.71 0.06 16 Total: 0.00 -21.61 334.31 -1.79 -23.40 By element: Atomic # 1 Polarization: -11.34 SS G_CDS: -0.89 Total: -12.22 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: 4.28 Total: 9.89 kcal Atomic # 7 Polarization: -6.00 SS G_CDS: -4.42 Total: -10.42 kcal Atomic # 8 Polarization: -6.26 SS G_CDS: -3.65 Total: -9.91 kcal Atomic # 9 Polarization: -0.94 SS G_CDS: 0.75 Total: -0.19 kcal Atomic # 14 Polarization: -2.69 SS G_CDS: 2.14 Total: -0.55 kcal Total: -21.61 -1.79 -23.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16500644_13259642.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.689 kcal (2) G-P(sol) polarization free energy of solvation -21.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds