Wall clock time and date at job start Thu Mar 4 2021 13:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81401 * 102.99894 * 2 1 4 4 C 1.52997 * 109.47171 * 180.02562 * 3 2 1 5 5 H 1.08998 * 112.85041 * 45.33603 * 4 3 2 6 6 C 1.53778 * 113.61629 * 176.53024 * 4 3 2 7 7 C 1.53778 * 87.08509 * 139.98209 * 6 4 3 8 8 H 1.09001 * 113.61945 * 89.11022 * 7 6 4 9 9 N 1.46501 * 113.61849 * 220.02379 * 7 6 4 10 10 C 1.34775 * 120.00334 * 205.00007 * 9 7 6 11 11 O 1.21593 * 119.99710 * 359.97438 * 10 9 7 12 12 C 1.47572 * 120.00333 * 179.97438 * 10 9 7 13 13 C 1.36493 * 120.01270 * 179.72129 * 12 10 9 14 14 N 1.35945 * 120.50957 * 179.71653 * 13 12 10 15 15 C 1.36997 * 132.41843 * 180.20208 * 14 13 12 16 16 C 1.50701 * 126.42738 * 0.34771 * 15 14 13 17 17 O 1.42902 * 109.47125 * 29.99729 * 16 15 14 18 18 Si 1.86300 * 109.46973 * 150.00068 * 16 15 14 19 19 C 1.35001 * 107.14502 * 180.32731 * 15 14 13 20 20 N 1.33588 * 108.65824 * 359.97438 * 19 15 14 21 21 C 1.32416 * 109.21721 * 0.02562 * 20 19 15 22 22 C 1.41254 * 132.11393 * 179.97438 * 21 20 19 23 23 Br 1.89101 * 120.25349 * 359.97438 * 22 21 20 24 24 C 1.35702 * 119.49087 * 180.02562 * 22 21 20 25 25 C 1.53785 * 113.61377 * 274.13849 * 4 3 2 26 26 H 1.09002 * 109.47124 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46975 * 59.99980 * 1 2 3 28 28 H 1.09004 * 109.47147 * 299.99944 * 1 2 3 29 29 H 1.08997 * 109.47283 * 300.00194 * 3 2 1 30 30 H 1.08998 * 109.47169 * 59.99851 * 3 2 1 31 31 H 1.08999 * 113.61820 * 254.52792 * 6 4 3 32 32 H 1.09000 * 113.61636 * 25.42927 * 6 4 3 33 33 H 0.97001 * 119.99640 * 24.99004 * 9 7 6 34 34 H 1.08008 * 119.74551 * 0.02562 * 13 12 10 35 35 H 1.08999 * 109.46662 * 269.99913 * 16 15 14 36 36 H 0.96698 * 113.99894 * 179.97438 * 17 16 15 37 37 H 1.48507 * 109.99593 * 178.67877 * 18 16 15 38 38 H 1.48496 * 110.00147 * 299.99575 * 18 16 15 39 39 H 1.08001 * 125.67686 * 180.02562 * 19 15 14 40 40 H 1.08006 * 120.23507 * 179.97438 * 24 22 21 41 41 H 1.08997 * 113.61205 * 334.56303 * 25 4 3 42 42 H 1.08997 * 113.61541 * 105.46899 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9400 -0.0006 5 1 4.2421 1.2862 -0.7153 6 6 4.1958 3.4069 -0.0860 7 6 5.2903 3.0457 0.9321 8 1 6.2144 2.6938 0.4735 9 7 5.5142 4.0803 1.9449 10 6 6.7073 4.1689 2.5655 11 8 7.5977 3.3897 2.2851 12 6 6.9331 5.2113 3.5853 13 6 8.1394 5.2976 4.2180 14 7 8.3603 6.2576 5.1549 15 6 9.4523 6.5657 5.9227 16 6 10.7842 5.8609 5.9078 17 8 11.0280 5.3304 4.6035 18 14 12.1315 7.0699 6.3484 19 6 9.1115 7.6194 6.6947 20 7 7.8494 7.9602 6.4197 21 6 7.3717 7.1487 5.4888 22 6 6.1133 7.0748 4.8515 23 35 4.7430 8.2968 5.3040 24 6 5.8949 6.1195 3.9128 25 6 4.3665 1.9083 1.4045 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5138 0.8900 29 1 1.8031 2.2371 -0.8899 30 1 1.8031 2.2371 0.8900 31 1 4.5853 3.6873 -1.0646 32 1 3.4601 4.1144 0.2964 33 1 4.8038 4.7017 2.1688 34 1 8.9263 4.6009 3.9688 35 1 10.7734 5.0483 6.6343 36 1 11.8701 4.8625 4.5203 37 1 13.4464 6.3799 6.3684 38 1 12.1567 8.1826 5.3654 39 1 9.7527 8.1065 7.4144 40 1 4.9371 6.0518 3.4183 41 1 3.6774 2.2053 2.1951 42 1 4.8935 0.9805 1.6273 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16534458_12335884.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:38:52 Heat of formation + Delta-G solvation = 60.752229 kcal Electronic energy + Delta-G solvation = -27659.555113 eV Core-core repulsion = 23588.263477 eV Total energy + Delta-G solvation = -4071.291635 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 412.024 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.24837 -41.48367 -39.82098 -38.42656 -38.01474 -35.55215 -34.88438 -32.61748 -31.92481 -30.56800 -30.24150 -29.59907 -26.90931 -26.71481 -25.99950 -24.07681 -23.55354 -22.44836 -21.80892 -20.73367 -19.19655 -18.79757 -18.63503 -17.94450 -17.62528 -17.45212 -16.99007 -16.42548 -16.29075 -16.22775 -16.02573 -15.60739 -15.50737 -15.18734 -14.91962 -14.68631 -14.58975 -14.24617 -14.12253 -13.81316 -13.48407 -13.43350 -13.37619 -13.32831 -13.09746 -12.89771 -12.85492 -12.17295 -12.16543 -11.60258 -11.57282 -11.51814 -11.42725 -11.36642 -11.23535 -10.91414 -10.87197 -10.24600 -9.98572 -9.05482 -8.69438 -4.95427 -0.90740 -0.38543 0.18182 0.74492 0.94609 1.16959 1.39101 1.63391 1.69463 1.78157 1.94795 2.00136 2.20734 2.77412 2.94880 3.15780 3.37423 3.39983 3.42899 3.53093 3.55775 3.73656 3.78244 3.93350 4.12142 4.24648 4.29118 4.30285 4.31390 4.33376 4.34962 4.45329 4.49299 4.55792 4.73523 4.76116 4.82660 4.87751 4.96516 4.99533 5.05976 5.17624 5.30710 5.50210 5.56631 6.30026 6.40792 6.47229 6.95363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 S -0.329 6.329 3 C -0.057 4.057 4 C -0.090 4.090 5 H 0.093 0.907 6 C -0.118 4.118 7 C 0.118 3.882 8 H 0.101 0.899 9 N -0.694 5.694 10 C 0.579 3.421 11 O -0.569 6.569 12 C -0.174 4.174 13 C 0.164 3.836 14 N -0.360 5.360 15 C -0.052 4.052 16 C -0.056 4.056 17 O -0.565 6.565 18 Si 0.809 3.191 19 C 0.041 3.959 20 N -0.490 5.490 21 C 0.221 3.779 22 C -0.081 4.081 23 Br 0.009 6.991 24 C -0.025 4.025 25 C -0.141 4.141 26 H 0.102 0.898 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.113 0.887 33 H 0.417 0.583 34 H 0.186 0.814 35 H 0.109 0.891 36 H 0.406 0.594 37 H -0.271 1.271 38 H -0.308 1.308 39 H 0.231 0.769 40 H 0.188 0.812 41 H 0.098 0.902 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.374 0.558 0.858 2.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 S -0.103 6.103 3 C -0.205 4.205 4 C -0.110 4.110 5 H 0.111 0.889 6 C -0.158 4.158 7 C 0.013 3.987 8 H 0.119 0.881 9 N -0.345 5.345 10 C 0.366 3.634 11 O -0.449 6.449 12 C -0.182 4.182 13 C 0.037 3.963 14 N -0.033 5.033 15 C -0.163 4.163 16 C -0.163 4.163 17 O -0.377 6.377 18 Si 0.711 3.289 19 C -0.108 4.108 20 N -0.209 5.209 21 C -0.024 4.024 22 C -0.163 4.163 23 Br 0.094 6.906 24 C -0.050 4.050 25 C -0.180 4.180 26 H 0.121 0.879 27 H 0.104 0.896 28 H 0.105 0.895 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.106 0.894 32 H 0.132 0.868 33 H 0.256 0.744 34 H 0.203 0.797 35 H 0.127 0.873 36 H 0.259 0.741 37 H -0.197 1.197 38 H -0.235 1.235 39 H 0.247 0.753 40 H 0.205 0.795 41 H 0.117 0.883 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.816 0.869 0.876 2.195 hybrid contribution 0.039 -0.763 -1.258 1.472 sum -1.777 0.106 -0.382 1.821 Atomic orbital electron populations 1.23397 0.91639 1.07107 1.05784 1.87323 1.10335 1.14459 1.98202 1.23382 0.98842 0.92226 1.06079 1.22038 0.92705 0.98124 0.98170 0.88884 1.23385 0.96907 0.95787 0.99719 1.22610 0.98510 0.88385 0.89182 0.88133 1.45695 1.13739 1.35015 1.40035 1.17604 0.82987 0.82462 0.80387 1.90831 1.44400 1.43983 1.65648 1.19280 0.94318 1.01536 1.03045 1.22164 0.98655 0.89451 0.85984 1.42722 1.12153 1.21935 1.26464 1.21462 0.89557 1.04182 1.01096 1.24802 0.97604 1.05608 0.88310 1.86441 1.45253 1.75840 1.30155 0.93599 0.73039 0.75087 0.87189 1.22983 0.92805 0.94205 1.00799 1.70843 1.11115 1.24790 1.14142 1.20744 0.91104 0.91696 0.98886 1.20580 0.91884 1.01486 1.02373 1.96827 1.42693 1.57715 1.93359 1.21352 0.99958 0.90156 0.93565 1.23573 0.98527 0.98569 0.97308 0.87942 0.89573 0.89544 0.88717 0.88630 0.89424 0.86837 0.74427 0.79708 0.87326 0.74149 1.19714 1.23534 0.75315 0.79511 0.88347 0.92233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.40 10.76 113.37 1.22 1.62 16 2 S -0.33 -0.46 22.38 -56.49 -1.26 -1.72 16 3 C -0.06 0.29 5.76 71.98 0.41 0.70 16 4 C -0.09 0.43 3.64 -10.27 -0.04 0.39 16 5 H 0.09 -0.19 8.14 -2.39 -0.02 -0.21 16 6 C -0.12 0.97 7.40 31.12 0.23 1.20 16 7 C 0.12 -0.38 4.24 45.58 0.19 -0.18 16 8 H 0.10 0.15 7.47 -2.39 -0.02 0.13 16 9 N -0.69 2.73 5.31 -442.87 -2.35 0.38 16 10 C 0.58 1.77 7.76 86.71 0.67 2.44 16 11 O -0.57 -6.27 15.87 -4.01 -0.06 -6.33 16 12 C -0.17 -0.37 5.84 -20.35 -0.12 -0.49 16 13 C 0.16 0.87 9.91 83.65 0.83 1.69 16 14 N -0.36 -2.34 2.93 -337.71 -0.99 -3.33 16 15 C -0.05 -0.17 6.28 41.01 0.26 0.08 16 16 C -0.06 0.15 3.05 71.24 0.22 0.36 16 17 O -0.57 0.10 10.89 -148.98 -1.62 -1.52 16 18 Si 0.81 -4.04 31.18 68.60 2.14 -1.90 16 19 C 0.04 0.11 10.44 83.68 0.87 0.98 16 20 N -0.49 -4.29 11.30 -194.10 -2.19 -6.49 16 21 C 0.22 1.75 7.59 134.19 1.02 2.77 16 22 C -0.08 -0.31 6.24 22.42 0.14 -0.17 16 23 Br 0.01 0.02 33.72 -20.37 -0.69 -0.66 16 24 C -0.02 0.03 9.26 22.55 0.21 0.24 16 25 C -0.14 0.43 7.45 31.18 0.23 0.66 16 26 H 0.10 -0.39 8.14 -2.39 -0.02 -0.41 16 27 H 0.09 -0.46 8.14 -2.39 -0.02 -0.48 16 28 H 0.09 -0.47 8.14 -2.39 -0.02 -0.49 16 29 H 0.09 -0.63 8.14 -2.39 -0.02 -0.65 16 30 H 0.10 -0.70 7.88 -2.39 -0.02 -0.71 16 31 H 0.09 -0.72 8.14 -2.39 -0.02 -0.74 16 32 H 0.11 -1.40 8.08 -2.39 -0.02 -1.42 16 33 H 0.42 -4.35 6.76 -92.71 -0.63 -4.98 16 34 H 0.19 1.09 6.20 -2.91 -0.02 1.08 16 35 H 0.11 -0.78 7.96 -2.39 -0.02 -0.80 16 36 H 0.41 -3.43 8.74 -74.06 -0.65 -4.07 16 37 H -0.27 0.53 7.11 99.48 0.71 1.24 16 38 H -0.31 -1.44 7.11 99.48 0.71 -0.74 16 39 H 0.23 -1.51 6.90 -2.91 -0.02 -1.53 16 40 H 0.19 -1.77 6.44 -2.91 -0.02 -1.79 16 41 H 0.10 -0.49 7.92 -2.39 -0.02 -0.51 16 42 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 Total: 0.00 -25.46 384.74 -0.83 -26.29 By element: Atomic # 1 Polarization: -16.88 SS G_CDS: -0.15 Total: -17.03 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: 6.35 Total: 12.32 kcal Atomic # 7 Polarization: -3.90 SS G_CDS: -5.54 Total: -9.44 kcal Atomic # 8 Polarization: -6.17 SS G_CDS: -1.69 Total: -7.86 kcal Atomic # 14 Polarization: -4.04 SS G_CDS: 2.14 Total: -1.90 kcal Atomic # 16 Polarization: -0.46 SS G_CDS: -1.26 Total: -1.72 kcal Atomic # 35 Polarization: 0.02 SS G_CDS: -0.69 Total: -0.66 kcal Total: -25.46 -0.83 -26.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16534458_12335884.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.046 kcal (2) G-P(sol) polarization free energy of solvation -25.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds