Wall clock time and date at job start Thu Mar 4 2021 12:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33819 * 122.44822 * 2 1 4 4 C 1.50706 * 124.52014 * 0.02562 * 3 2 1 5 5 O 1.42895 * 109.46938 * 329.71857 * 4 3 2 6 6 Si 1.86299 * 109.46748 * 209.72021 * 4 3 2 7 7 S 1.70611 * 110.95542 * 179.74595 * 3 2 1 8 8 C 1.75831 * 91.56401 * 0.23092 * 7 3 2 9 9 C 1.46582 * 125.46022 * 179.97438 * 8 7 3 10 10 O 1.21698 * 120.00115 * 180.02562 * 9 8 7 11 11 N 1.34781 * 119.99759 * 0.02562 * 9 8 7 12 12 C 1.46503 * 119.99485 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.46699 * 180.02562 * 12 11 9 14 14 C 1.52996 * 109.47198 * 179.97438 * 13 12 11 15 15 H 1.09008 * 112.84722 * 45.33516 * 14 13 12 16 16 C 1.53786 * 113.61858 * 176.52732 * 14 13 12 17 17 C 1.53784 * 87.08007 * 139.98306 * 16 14 13 18 18 H 1.08999 * 113.61172 * 89.20270 * 17 16 14 19 19 N 1.46497 * 113.60890 * 220.02031 * 17 16 14 20 20 C 1.34779 * 119.99567 * 204.99924 * 19 17 16 21 21 O 1.21509 * 120.00189 * 0.02562 * 20 19 17 22 22 O 1.34644 * 119.99960 * 180.02562 * 20 19 17 23 23 C 1.45199 * 116.99932 * 180.02562 * 22 20 19 24 24 C 1.53002 * 109.47172 * 59.99895 * 23 22 20 25 25 C 1.52999 * 109.47281 * 180.02562 * 23 22 20 26 26 C 1.53000 * 109.47279 * 300.00238 * 23 22 20 27 27 C 1.53779 * 113.61650 * 274.13781 * 14 13 12 28 28 C 1.36651 * 109.08237 * 359.97438 * 8 7 3 29 29 H 1.09003 * 109.46604 * 90.00324 * 1 2 3 30 30 H 1.08998 * 109.46865 * 209.99629 * 1 2 3 31 31 H 1.08998 * 109.47479 * 330.00652 * 1 2 3 32 32 H 1.09000 * 109.47161 * 89.72122 * 4 3 2 33 33 H 0.96698 * 114.00355 * 299.99977 * 5 4 3 34 34 H 1.48504 * 109.99999 * 179.97438 * 6 4 3 35 35 H 1.48501 * 110.00135 * 301.31786 * 6 4 3 36 36 H 0.96997 * 120.00016 * 0.02562 * 11 9 8 37 37 H 1.08994 * 109.47438 * 300.00060 * 12 11 9 38 38 H 1.09000 * 109.46796 * 60.00414 * 12 11 9 39 39 H 1.09001 * 109.47504 * 299.99982 * 13 12 11 40 40 H 1.09005 * 109.47177 * 60.00100 * 13 12 11 41 41 H 1.08995 * 113.61409 * 254.53554 * 16 14 13 42 42 H 1.09004 * 113.60811 * 25.35288 * 16 14 13 43 43 H 0.96994 * 120.00595 * 25.00970 * 19 17 16 44 44 H 1.09008 * 109.46857 * 60.00005 * 24 23 22 45 45 H 1.08995 * 109.47266 * 179.97438 * 24 23 22 46 46 H 1.08994 * 109.47087 * 300.00424 * 24 23 22 47 47 H 1.09002 * 109.46977 * 59.99834 * 25 23 22 48 48 H 1.08995 * 109.47323 * 180.02562 * 25 23 22 49 49 H 1.08999 * 109.46986 * 300.00365 * 25 23 22 50 50 H 1.08996 * 109.47190 * 60.00076 * 26 23 22 51 51 H 1.08995 * 109.47143 * 179.97438 * 26 23 22 52 52 H 1.09002 * 109.46896 * 300.00115 * 26 23 22 53 53 H 1.08999 * 113.61721 * 334.56717 * 27 14 13 54 54 H 1.09008 * 113.61224 * 105.47104 * 27 14 13 55 55 H 1.08004 * 123.35095 * 180.02562 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1293 0.0000 4 6 1.6354 2.5162 0.0006 5 8 0.3781 2.4995 -0.6783 6 14 2.7960 3.6846 -0.8704 7 16 3.8969 0.7893 0.0071 8 6 3.5938 -0.9426 0.0030 9 6 4.6232 -1.9861 0.0055 10 8 4.3003 -3.1595 0.0017 11 7 5.9274 -1.6461 0.0119 12 6 6.9562 -2.6891 0.0138 13 6 8.3412 -2.0390 0.0220 14 6 9.4157 -3.1282 0.0247 15 1 9.2138 -3.9238 -0.6926 16 6 10.8501 -2.5788 -0.0525 17 6 11.2367 -3.6646 0.9655 18 1 11.5344 -4.6074 0.5065 19 7 12.1837 -3.2037 1.9838 20 6 12.9870 -4.0886 2.6068 21 8 12.9261 -5.2687 2.3234 22 8 13.8570 -3.6651 3.5430 23 6 14.6911 -4.6735 4.1721 24 6 15.5403 -5.3700 3.1068 25 6 15.6076 -4.0082 5.2008 26 6 13.8040 -5.7052 4.8718 27 6 9.7693 -3.6413 1.4305 28 6 2.2447 -1.1600 -0.0029 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5137 32 1 1.4890 2.8484 1.0283 33 1 0.4327 2.2130 -1.6003 34 1 2.2258 5.0558 -0.8772 35 1 4.1174 3.6870 -0.1929 36 1 6.1847 -0.7109 0.0153 37 1 6.8418 -3.3107 0.9018 38 1 6.8494 -3.3064 -0.8781 39 1 8.4560 -1.4171 -0.8658 40 1 8.4477 -1.4219 0.9142 41 1 11.3159 -2.7100 -1.0291 42 1 10.9498 -1.5634 0.3311 43 1 12.2325 -2.2617 2.2098 44 1 16.1723 -4.6350 2.6082 45 1 16.1668 -6.1266 3.5790 46 1 14.8871 -5.8440 2.3742 47 1 15.0022 -3.5123 5.9597 48 1 16.2340 -4.7651 5.6727 49 1 16.2395 -3.2729 4.7027 50 1 13.1509 -6.1793 4.1392 51 1 14.4302 -6.4624 5.3436 52 1 13.1990 -5.2090 5.6307 53 1 9.5733 -2.9176 2.2217 54 1 9.3640 -4.6293 1.6494 55 1 1.8020 -2.1452 -0.0060 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16659234_6739946.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 12:31:16 Heat of formation + Delta-G solvation = -102.503906 kcal Electronic energy + Delta-G solvation = -33865.037635 eV Core-core repulsion = 29188.848017 eV Total energy + Delta-G solvation = -4676.189618 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 397.180 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -41.90692 -41.03228 -40.35625 -39.79246 -38.04610 -37.32226 -36.38731 -35.38991 -34.30357 -32.51977 -31.23363 -30.20122 -28.40042 -28.32971 -27.14764 -26.67086 -25.55679 -24.45558 -23.57303 -22.26348 -21.77024 -21.37338 -20.44370 -20.16911 -19.37571 -19.11331 -17.80022 -17.75672 -17.28725 -17.20553 -16.92793 -16.82960 -16.52136 -16.32155 -16.17491 -15.70996 -15.59982 -15.43775 -15.21447 -15.07461 -14.54714 -14.51654 -14.44334 -13.94805 -13.83093 -13.69256 -13.45812 -13.39764 -13.37417 -13.19478 -13.09301 -12.97299 -12.94392 -12.89465 -12.85961 -12.63336 -12.43945 -12.38848 -12.31663 -12.24124 -11.85341 -11.78889 -11.63714 -11.42205 -11.25206 -11.19956 -11.11245 -10.66913 -10.30341 -10.13503 -9.68116 -9.42196 -5.05311 -0.68258 0.26669 0.68678 1.11426 1.17391 1.32454 1.55123 1.72017 1.90724 1.99108 2.05332 3.14972 3.37117 3.48218 3.50372 3.60669 3.71519 3.71784 3.76135 3.82553 3.83734 3.91682 4.09469 4.10472 4.26267 4.27848 4.34373 4.44905 4.51022 4.58063 4.59247 4.62555 4.64596 4.73252 4.75692 4.78217 4.81561 4.84117 4.84786 4.87399 4.91113 4.95705 4.99379 5.01794 5.04122 5.11839 5.19523 5.23908 5.26061 5.29163 5.33452 5.39418 5.47891 5.55005 5.60649 6.30937 6.40145 6.67394 6.99206 7.33272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.100 4.100 3 C -0.235 4.235 4 C -0.032 4.032 5 O -0.540 6.540 6 Si 0.730 3.270 7 S 0.240 5.760 8 C -0.284 4.284 9 C 0.586 3.414 10 O -0.573 6.573 11 N -0.714 5.714 12 C 0.118 3.882 13 C -0.109 4.109 14 C -0.097 4.097 15 H 0.099 0.901 16 C -0.123 4.123 17 C 0.129 3.871 18 H 0.099 0.901 19 N -0.689 5.689 20 C 0.641 3.359 21 O -0.597 6.597 22 O -0.370 6.370 23 C 0.127 3.873 24 C -0.180 4.180 25 C -0.137 4.137 26 C -0.180 4.180 27 C -0.150 4.150 28 C -0.057 4.057 29 H 0.085 0.915 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.122 0.878 33 H 0.396 0.604 34 H -0.274 1.274 35 H -0.252 1.252 36 H 0.411 0.589 37 H 0.057 0.943 38 H 0.064 0.936 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.109 0.891 43 H 0.417 0.583 44 H 0.063 0.937 45 H 0.086 0.914 46 H 0.062 0.938 47 H 0.069 0.931 48 H 0.098 0.902 49 H 0.070 0.930 50 H 0.062 0.938 51 H 0.086 0.914 52 H 0.061 0.939 53 H 0.094 0.906 54 H 0.059 0.941 55 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.675 7.393 -2.296 8.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.112 4.112 3 C -0.355 4.355 4 C -0.144 4.144 5 O -0.348 6.348 6 Si 0.632 3.368 7 S 0.509 5.491 8 C -0.404 4.404 9 C 0.374 3.626 10 O -0.455 6.455 11 N -0.366 5.366 12 C -0.005 4.005 13 C -0.146 4.146 14 C -0.116 4.116 15 H 0.117 0.883 16 C -0.161 4.161 17 C 0.025 3.975 18 H 0.117 0.883 19 N -0.348 5.348 20 C 0.394 3.606 21 O -0.488 6.488 22 O -0.285 6.285 23 C 0.091 3.909 24 C -0.237 4.237 25 C -0.194 4.194 26 C -0.237 4.237 27 C -0.189 4.189 28 C -0.091 4.091 29 H 0.103 0.897 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.139 0.861 33 H 0.246 0.754 34 H -0.200 1.200 35 H -0.177 1.177 36 H 0.248 0.752 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.111 0.889 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.127 0.873 43 H 0.255 0.745 44 H 0.082 0.918 45 H 0.105 0.895 46 H 0.081 0.919 47 H 0.088 0.912 48 H 0.116 0.884 49 H 0.089 0.911 50 H 0.081 0.919 51 H 0.105 0.895 52 H 0.080 0.920 53 H 0.113 0.887 54 H 0.078 0.922 55 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.163 7.788 -1.729 8.999 hybrid contribution -1.558 -0.999 0.776 2.007 sum 2.605 6.789 -0.953 7.334 Atomic orbital electron populations 1.20622 0.87912 1.02923 1.03562 1.18764 0.98977 0.90240 1.03235 1.24696 0.98807 1.01230 1.10720 1.24628 0.92758 0.94808 1.02247 1.86506 1.27742 1.90148 1.30377 0.93960 0.75984 0.77668 0.89150 1.82734 1.02564 0.95734 1.68088 1.24570 0.97753 0.98424 1.19691 1.17217 0.82642 0.87060 0.75729 1.90833 1.82446 1.20130 1.52055 1.45806 1.04755 1.11342 1.74689 1.21480 0.86867 0.90135 1.02009 1.21703 0.90468 0.97879 1.04569 1.22194 0.93962 0.98443 0.97014 0.88308 1.23383 0.94694 0.98899 0.99141 1.22693 0.86722 0.99738 0.88341 0.88330 1.44807 1.38533 1.10570 1.40857 1.18490 0.78821 0.84624 0.78617 1.90901 1.72622 1.17057 1.68215 1.86311 1.48961 1.42341 1.50847 1.22340 0.89130 0.86773 0.92673 1.22471 1.00187 1.01551 0.99493 1.21889 0.98390 1.02077 0.97090 1.22472 1.00881 0.99428 1.00955 1.23668 0.95013 1.02129 0.98106 1.20810 0.91337 1.00344 0.96579 0.89686 0.92235 0.90175 0.86103 0.75384 1.19966 1.17735 0.75249 0.92414 0.91788 0.88939 0.89655 0.89625 0.87317 0.74539 0.91844 0.89495 0.91878 0.91197 0.88352 0.91085 0.91926 0.89487 0.92008 0.88736 0.92196 0.83731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.15 8.68 71.24 0.62 0.77 16 2 C -0.10 -0.05 5.75 -21.05 -0.12 -0.17 16 3 C -0.23 0.46 5.53 24.68 0.14 0.60 16 4 C -0.03 0.13 2.76 71.24 0.20 0.33 16 5 O -0.54 2.23 9.87 -148.98 -1.47 0.76 16 6 Si 0.73 -4.14 31.32 68.60 2.15 -1.99 16 7 S 0.24 -0.73 19.79 -56.49 -1.12 -1.85 16 8 C -0.28 -0.94 6.45 24.08 0.16 -0.78 16 9 C 0.59 3.90 7.78 86.42 0.67 4.57 16 10 O -0.57 -8.83 16.84 -4.34 -0.07 -8.90 16 11 N -0.71 0.50 5.55 -467.17 -2.59 -2.10 16 12 C 0.12 -0.22 5.67 86.38 0.49 0.27 16 13 C -0.11 0.93 5.15 30.59 0.16 1.09 16 14 C -0.10 0.67 3.64 -10.27 -0.04 0.64 16 15 H 0.10 -0.60 8.14 -2.38 -0.02 -0.62 16 16 C -0.12 0.99 7.40 31.12 0.23 1.22 16 17 C 0.13 -0.24 4.24 45.58 0.19 -0.04 16 18 H 0.10 0.27 7.46 -2.39 -0.02 0.25 16 19 N -0.69 0.06 5.36 -567.31 -3.04 -2.98 16 20 C 0.64 4.51 8.06 129.79 1.05 5.56 16 21 O -0.60 -7.69 11.48 19.81 0.23 -7.46 16 22 O -0.37 -2.13 9.94 -55.54 -0.55 -2.68 16 23 C 0.13 0.43 1.13 -10.79 -0.01 0.42 16 24 C -0.18 -0.66 8.37 71.98 0.60 -0.06 16 25 C -0.14 0.25 8.85 71.98 0.64 0.89 16 26 C -0.18 -0.73 8.37 71.98 0.60 -0.13 16 27 C -0.15 0.49 7.45 31.18 0.23 0.72 16 28 C -0.06 -0.22 9.80 21.72 0.21 -0.01 16 29 H 0.08 -0.37 8.14 -2.39 -0.02 -0.39 16 30 H 0.06 -0.06 8.13 -2.39 -0.02 -0.08 16 31 H 0.08 -0.04 6.42 -2.39 -0.02 -0.05 16 32 H 0.12 -0.41 7.96 -2.39 -0.02 -0.43 16 33 H 0.40 -4.39 8.67 -74.06 -0.64 -5.03 16 34 H -0.27 -0.31 7.11 99.48 0.71 0.39 16 35 H -0.25 0.80 7.09 99.48 0.71 1.50 16 36 H 0.41 -2.62 7.59 -92.71 -0.70 -3.32 16 37 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 38 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 39 H 0.09 -1.02 8.14 -2.39 -0.02 -1.04 16 40 H 0.08 -0.88 7.87 -2.38 -0.02 -0.90 16 41 H 0.09 -0.70 8.14 -2.39 -0.02 -0.72 16 42 H 0.11 -1.22 8.08 -2.38 -0.02 -1.24 16 43 H 0.42 -2.16 8.84 -92.71 -0.82 -2.98 16 44 H 0.06 0.17 8.14 -2.38 -0.02 0.15 16 45 H 0.09 0.02 8.14 -2.39 -0.02 0.00 16 46 H 0.06 0.58 5.88 -2.39 -0.01 0.56 16 47 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 48 H 0.10 -0.49 8.14 -2.39 -0.02 -0.51 16 49 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 50 H 0.06 0.61 5.88 -2.39 -0.01 0.59 16 51 H 0.09 0.05 8.14 -2.39 -0.02 0.03 16 52 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 53 H 0.09 -0.42 7.92 -2.39 -0.02 -0.44 16 54 H 0.06 0.02 8.14 -2.38 -0.02 0.01 16 55 H 0.14 0.75 8.06 -2.91 -0.02 0.72 16 Total: 0.00 -23.28 452.17 -1.66 -24.94 By element: Atomic # 1 Polarization: -12.42 SS G_CDS: -1.20 Total: -13.63 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: 6.01 Total: 15.88 kcal Atomic # 7 Polarization: 0.56 SS G_CDS: -5.64 Total: -5.08 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -1.87 Total: -18.28 kcal Atomic # 14 Polarization: -4.14 SS G_CDS: 2.15 Total: -1.99 kcal Atomic # 16 Polarization: -0.73 SS G_CDS: -1.12 Total: -1.85 kcal Total: -23.28 -1.66 -24.94 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16659234_6739946.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.563 kcal (2) G-P(sol) polarization free energy of solvation -23.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds