Wall clock time and date at job start Thu Mar 4 2021 13:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.28469 * 124.88445 * 2 1 4 4 C 1.31814 * 110.07293 * 179.97438 * 3 2 1 5 5 C 1.47703 * 126.52021 * 179.97438 * 4 3 2 6 6 O 1.21574 * 120.00321 * 180.02562 * 5 4 3 7 7 N 1.34784 * 119.99984 * 0.02682 * 5 4 3 8 8 C 1.46493 * 119.99864 * 179.72598 * 7 5 4 9 9 H 1.08999 * 109.47597 * 34.99540 * 8 7 5 10 10 C 1.52996 * 109.47222 * 155.00033 * 8 7 5 11 11 C 1.52999 * 109.47703 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47031 * 300.00331 * 11 10 8 13 13 H 1.08993 * 109.46921 * 299.99232 * 12 11 10 14 14 N 1.46507 * 109.46909 * 179.97438 * 12 11 10 15 15 C 1.46443 * 126.08587 * 299.99663 * 14 12 11 16 16 C 1.53197 * 113.70780 * 178.24913 * 15 14 12 17 17 C 1.55566 * 106.23705 * 27.54916 * 16 15 14 18 18 S 1.67289 * 126.08098 * 119.69131 * 14 12 11 19 19 O 1.42105 * 105.40516 * 274.99296 * 18 14 12 20 20 O 1.42101 * 105.41084 * 45.25084 * 18 14 12 21 21 C 1.52997 * 109.47264 * 59.99703 * 12 11 10 22 22 C 1.53000 * 109.47099 * 274.99655 * 8 7 5 23 23 C 1.41506 * 106.96378 * 0.26156 * 4 3 2 24 24 C 1.35031 * 124.88516 * 179.97438 * 2 1 3 25 25 C 1.50706 * 126.38391 * 0.02562 * 24 2 1 26 26 O 1.42902 * 109.46985 * 29.99755 * 25 24 2 27 27 Si 1.86299 * 109.47168 * 150.00269 * 25 24 2 28 28 H 1.09003 * 109.47037 * 90.02580 * 1 2 3 29 29 H 1.08999 * 109.47859 * 210.03121 * 1 2 3 30 30 H 1.09007 * 109.47231 * 330.03459 * 1 2 3 31 31 H 0.97000 * 119.99339 * 359.97438 * 7 5 4 32 32 H 1.09003 * 109.47300 * 299.99847 * 10 8 7 33 33 H 1.08999 * 109.47237 * 59.99286 * 10 8 7 34 34 H 1.09010 * 109.46539 * 59.99757 * 11 10 8 35 35 H 1.08994 * 109.47830 * 179.97438 * 11 10 8 36 36 H 1.09003 * 108.64509 * 299.35748 * 15 14 12 37 37 H 1.09005 * 108.64498 * 57.13431 * 15 14 12 38 38 H 1.08992 * 110.10606 * 146.74244 * 16 15 14 39 39 H 1.09002 * 110.09889 * 268.36023 * 16 15 14 40 40 H 1.08993 * 111.36766 * 80.61953 * 17 16 15 41 41 H 1.09000 * 111.36845 * 205.41094 * 17 16 15 42 42 H 1.08993 * 109.47536 * 59.99905 * 21 12 11 43 43 H 1.09000 * 109.46884 * 180.02562 * 21 12 11 44 44 H 1.09005 * 109.47224 * 300.00512 * 22 8 7 45 45 H 1.09008 * 109.47230 * 60.00254 * 22 8 7 46 46 H 1.07996 * 127.25115 * 179.73702 * 23 4 3 47 47 H 1.09003 * 109.46714 * 269.99856 * 25 24 2 48 48 H 0.96703 * 113.99473 * 60.00454 * 26 25 24 49 49 H 1.48498 * 109.99991 * 180.02562 * 27 25 24 50 50 H 1.48501 * 109.99682 * 301.31494 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.1997 1.0538 0.0000 4 6 3.4740 0.7169 0.0006 5 6 4.6272 1.6397 0.0002 6 8 5.7597 1.1976 0.0003 7 7 4.4241 2.9722 -0.0002 8 6 5.5679 3.8875 0.0055 9 1 6.3804 3.4575 -0.5802 10 6 5.1522 5.2271 -0.6055 11 6 6.3465 6.1833 -0.5990 12 6 6.8160 6.4031 0.8405 13 1 6.0033 6.8330 1.4260 14 7 7.9600 7.3183 0.8467 15 6 9.2426 7.1003 0.1743 16 6 10.2267 8.2637 0.3328 17 6 9.8644 8.9600 1.6759 18 16 8.0310 8.8015 1.6171 19 8 7.4560 9.7281 0.7060 20 8 7.4869 8.5813 2.9112 21 6 7.2318 5.0635 1.4515 22 6 6.0378 4.1074 1.4448 23 6 3.5272 -0.6972 -0.0052 24 6 2.2372 -1.1077 0.0005 25 6 1.7533 -2.5349 0.0006 26 8 0.4955 -2.6114 -0.6735 27 14 2.9948 -3.6117 -0.8769 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3635 -0.8897 0.5143 30 1 -0.3634 0.8903 0.5133 31 1 3.5205 3.3249 -0.0007 32 1 4.8173 5.0705 -1.6309 33 1 4.3397 5.6571 -0.0198 34 1 7.1593 5.7534 -1.1846 35 1 6.0505 7.1375 -1.0347 36 1 9.7005 6.1987 0.5811 37 1 9.0568 6.9432 -0.8882 38 1 11.2489 7.8873 0.3698 39 1 10.1146 8.9644 -0.4946 40 1 10.2855 8.4249 2.5269 41 1 10.1711 10.0060 1.6763 42 1 8.0444 4.6337 0.8660 43 1 7.5658 5.2201 2.4772 44 1 5.2254 4.5374 2.0307 45 1 6.3341 3.1530 1.8802 46 1 4.4107 -1.3181 -0.0104 47 1 1.6363 -2.8787 1.0283 48 1 0.5249 -2.3202 -1.5951 49 1 2.5289 -5.0217 -0.8842 50 1 3.1870 -3.1336 -2.2697 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16729364_13259642.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:46:14 Heat of formation + Delta-G solvation = -52.025660 kcal Electronic energy + Delta-G solvation = -34045.188763 eV Core-core repulsion = 29395.873843 eV Total energy + Delta-G solvation = -4649.314920 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 385.155 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -43.83782 -41.02709 -39.60666 -38.27273 -38.16598 -37.57121 -36.96505 -35.36673 -34.42337 -33.13150 -32.49194 -31.83780 -29.59820 -28.29789 -27.24770 -26.69632 -24.63971 -23.79649 -23.40519 -22.53320 -22.12941 -21.12623 -20.52538 -19.89840 -19.17648 -18.34192 -17.83365 -17.64160 -17.53858 -17.38496 -17.02275 -16.92997 -16.32270 -16.00968 -15.74734 -15.73191 -15.65791 -15.25963 -15.19680 -14.91534 -14.80637 -14.53606 -14.42083 -14.09159 -14.01541 -13.74835 -13.57681 -13.41963 -13.37539 -13.24790 -13.20373 -13.11858 -12.69521 -12.68662 -12.45963 -12.28921 -12.23429 -12.16419 -12.02154 -11.99175 -11.56779 -11.43241 -11.33243 -11.16692 -11.07147 -10.29344 -10.00802 -9.97212 -9.82156 -4.88881 -0.78632 0.44872 0.82881 1.22659 1.46699 1.54991 1.67739 1.94597 2.12125 2.32097 2.60598 2.95393 3.09545 3.30610 3.32045 3.35278 3.58441 3.64137 3.69961 3.90938 3.96951 4.00928 4.08606 4.16903 4.20889 4.28996 4.35799 4.36642 4.41623 4.44245 4.47055 4.49181 4.54028 4.62257 4.65012 4.69759 4.69989 4.72879 4.93494 4.96870 5.01466 5.07993 5.12584 5.14352 5.16094 5.25987 5.32812 5.39261 5.49258 5.67455 5.70267 6.27533 6.40115 6.82241 7.13288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.265 5.265 3 N -0.267 5.267 4 C -0.040 4.040 5 C 0.605 3.395 6 O -0.562 6.562 7 N -0.706 5.706 8 C 0.147 3.853 9 H 0.083 0.917 10 C -0.119 4.119 11 C -0.122 4.122 12 C 0.183 3.817 13 H 0.079 0.921 14 N -0.983 5.983 15 C 0.068 3.932 16 C -0.124 4.124 17 C -0.556 4.556 18 S 2.542 3.458 19 O -0.996 6.996 20 O -1.004 7.004 21 C -0.117 4.117 22 C -0.125 4.125 23 C -0.187 4.187 24 C -0.014 4.014 25 C -0.045 4.045 26 O -0.538 6.538 27 Si 0.784 3.216 28 H 0.100 0.900 29 H 0.116 0.884 30 H 0.100 0.900 31 H 0.413 0.587 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.139 0.861 39 H 0.100 0.900 40 H 0.162 0.838 41 H 0.160 0.840 42 H 0.081 0.919 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.059 0.941 46 H 0.182 0.818 47 H 0.145 0.855 48 H 0.388 0.612 49 H -0.284 1.284 50 H -0.294 1.294 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.852 -2.168 -1.583 3.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.055 5.055 3 N -0.104 5.104 4 C -0.198 4.198 5 C 0.390 3.610 6 O -0.439 6.439 7 N -0.356 5.356 8 C 0.043 3.957 9 H 0.101 0.899 10 C -0.158 4.158 11 C -0.161 4.161 12 C 0.079 3.921 13 H 0.097 0.903 14 N -0.824 5.824 15 C -0.057 4.057 16 C -0.163 4.163 17 C -0.692 4.692 18 S 2.644 3.356 19 O -0.985 6.985 20 O -0.994 6.994 21 C -0.157 4.157 22 C -0.164 4.164 23 C -0.215 4.215 24 C -0.139 4.139 25 C -0.155 4.155 26 O -0.345 6.345 27 Si 0.687 3.313 28 H 0.118 0.882 29 H 0.134 0.866 30 H 0.119 0.881 31 H 0.249 0.751 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.157 0.843 39 H 0.119 0.881 40 H 0.180 0.820 41 H 0.178 0.822 42 H 0.099 0.901 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.078 0.922 46 H 0.199 0.801 47 H 0.163 0.837 48 H 0.238 0.762 49 H -0.211 1.211 50 H -0.221 1.221 Dipole moment (debyes) X Y Z Total from point charges 0.858 -1.725 -1.351 2.354 hybrid contribution -0.476 -0.125 -0.705 0.859 sum 0.382 -1.850 -2.056 2.792 Atomic orbital electron populations 1.22599 0.70822 1.06670 1.06001 1.45686 1.08966 1.01941 1.48870 1.73472 1.02810 1.14753 1.19407 1.21866 0.90911 0.94563 1.12491 1.17015 0.86363 0.82079 0.75507 1.90781 1.23614 1.77696 1.51785 1.45884 1.11154 1.04776 1.73813 1.21085 0.88436 0.89417 0.96768 0.89926 1.21749 0.98728 0.92967 1.02347 1.21835 0.98308 0.99893 0.96110 1.20675 0.85268 0.89232 0.96962 0.90313 1.57018 1.20498 1.36691 1.68228 1.21798 0.82715 1.00828 1.00398 1.22572 1.02821 0.96586 0.94300 1.30610 1.18944 1.12073 1.07531 1.07058 0.80779 0.74276 0.73477 1.93602 1.76832 1.63578 1.64510 1.93549 1.79054 1.84751 1.42038 1.21771 0.98257 0.93747 1.01927 1.21852 0.98501 0.99568 0.96481 1.21724 0.97420 0.93499 1.08812 1.22189 0.91021 0.92074 1.08591 1.24866 0.93453 0.92084 1.05125 1.86582 1.29350 1.88576 1.30022 0.93228 0.83895 0.74722 0.79475 0.88165 0.86557 0.88094 0.75061 0.89854 0.90294 0.89841 0.90848 0.89201 0.89364 0.84277 0.88124 0.82023 0.82222 0.90068 0.91171 0.91228 0.92215 0.80056 0.83725 0.76206 1.21091 1.22070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.50 10.12 127.77 1.29 0.80 16 2 N -0.27 -0.15 3.70 -355.92 -1.32 -1.47 16 3 N -0.27 -1.20 11.67 -48.18 -0.56 -1.76 16 4 C -0.04 -0.26 7.13 42.45 0.30 0.04 16 5 C 0.61 4.85 7.79 86.74 0.68 5.53 16 6 O -0.56 -7.62 16.59 -3.95 -0.07 -7.69 16 7 N -0.71 -1.82 5.07 -445.55 -2.26 -4.08 16 8 C 0.15 0.10 2.46 44.99 0.11 0.21 16 9 H 0.08 0.27 7.57 -2.39 -0.02 0.25 16 10 C -0.12 0.34 5.39 30.59 0.16 0.50 16 11 C -0.12 0.27 5.24 30.59 0.16 0.43 16 12 C 0.18 0.02 2.86 44.99 0.13 0.15 16 13 H 0.08 0.18 8.10 -2.39 -0.02 0.16 16 14 N -0.98 0.93 3.13 -493.16 -1.55 -0.61 16 15 C 0.07 -0.51 6.19 86.46 0.53 0.02 16 16 C -0.12 1.32 6.61 31.54 0.21 1.53 16 17 C -0.56 4.60 7.67 72.87 0.56 5.15 16 18 S 2.54 6.85 6.16 -56.49 -0.35 6.50 16 19 O -1.00 -10.36 18.14 -127.81 -2.32 -12.68 16 20 O -1.00 -11.03 18.04 -127.81 -2.31 -13.34 16 21 C -0.12 0.07 5.25 30.58 0.16 0.23 16 22 C -0.12 -0.15 5.49 30.58 0.17 0.02 16 23 C -0.19 -0.59 9.35 22.41 0.21 -0.38 16 24 C -0.01 0.00 6.18 41.41 0.26 0.26 16 25 C -0.05 0.21 2.87 71.24 0.20 0.41 16 26 O -0.54 2.47 10.40 -148.98 -1.55 0.92 16 27 Si 0.78 -2.94 31.22 68.60 2.14 -0.80 16 28 H 0.10 -0.93 8.14 -2.39 -0.02 -0.95 16 29 H 0.12 -0.90 6.77 -2.39 -0.02 -0.92 16 30 H 0.10 -0.75 8.14 -2.38 -0.02 -0.77 16 31 H 0.41 -0.09 8.33 -92.71 -0.77 -0.86 16 32 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 33 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 34 H 0.08 -0.34 7.59 -2.38 -0.02 -0.35 16 35 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 36 H 0.09 -0.89 7.74 -2.39 -0.02 -0.91 16 37 H 0.09 -0.76 7.59 -2.38 -0.02 -0.78 16 38 H 0.14 -2.12 8.14 -2.39 -0.02 -2.14 16 39 H 0.10 -1.10 8.14 -2.39 -0.02 -1.12 16 40 H 0.16 -1.83 8.14 -2.39 -0.02 -1.85 16 41 H 0.16 -1.83 8.14 -2.39 -0.02 -1.85 16 42 H 0.08 -0.19 7.68 -2.39 -0.02 -0.21 16 43 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 44 H 0.07 0.06 8.14 -2.38 -0.02 0.04 16 45 H 0.06 0.29 8.14 -2.38 -0.02 0.27 16 46 H 0.18 -0.05 7.01 -2.91 -0.02 -0.07 16 47 H 0.15 -1.06 7.96 -2.39 -0.02 -1.08 16 48 H 0.39 -3.48 8.70 -74.06 -0.64 -4.13 16 49 H -0.28 -0.59 7.11 99.48 0.71 0.11 16 50 H -0.29 -0.79 7.11 99.48 0.71 -0.08 16 Total: 0.00 -32.60 411.69 -5.39 -38.00 By element: Atomic # 1 Polarization: -17.49 SS G_CDS: -0.40 Total: -17.89 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: 5.14 Total: 14.91 kcal Atomic # 7 Polarization: -2.25 SS G_CDS: -5.68 Total: -7.93 kcal Atomic # 8 Polarization: -26.54 SS G_CDS: -6.24 Total: -32.78 kcal Atomic # 14 Polarization: -2.94 SS G_CDS: 2.14 Total: -0.80 kcal Atomic # 16 Polarization: 6.85 SS G_CDS: -0.35 Total: 6.50 kcal Total: -32.60 -5.39 -38.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16729364_13259642.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.029 kcal (2) G-P(sol) polarization free energy of solvation -32.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds