Wall clock time and date at job start Thu Mar 4 2021 13:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86301 * 109.47423 * 2 1 4 4 C 1.86305 * 109.47163 * 239.99839 * 2 1 3 5 5 C 1.86800 * 109.47265 * 120.00080 * 2 1 3 6 6 C 1.38228 * 119.53738 * 89.99709 * 5 2 1 7 7 C 1.38551 * 119.23982 * 179.97438 * 6 5 2 8 8 C 1.39254 * 118.35644 * 359.97438 * 7 6 5 9 9 N 1.39880 * 120.48565 * 179.97438 * 8 7 6 10 10 C 1.34777 * 120.00169 * 34.96578 * 9 8 7 11 11 O 1.21603 * 120.00016 * 355.31278 * 10 9 8 12 12 C 1.47547 * 119.99685 * 175.30672 * 10 9 8 13 13 C 1.36517 * 120.01181 * 180.02562 * 12 10 9 14 14 N 1.35947 * 120.50495 * 180.02562 * 13 12 10 15 15 C 1.37000 * 132.40855 * 180.02562 * 14 13 12 16 16 C 1.50701 * 126.42936 * 0.03073 * 15 14 13 17 17 O 1.42902 * 109.47295 * 329.71161 * 16 15 14 18 18 Si 1.86304 * 109.47163 * 209.71499 * 16 15 14 19 19 H 1.48500 * 109.47291 * 179.97438 * 18 16 15 20 20 H 1.48505 * 109.47077 * 59.99983 * 18 16 15 21 21 H 1.48495 * 109.47220 * 300.00223 * 18 16 15 22 22 C 1.35011 * 107.14187 * 179.77025 * 15 14 13 23 23 N 1.33586 * 108.65422 * 0.22611 * 22 15 14 24 24 C 1.32418 * 109.22062 * 359.97438 * 23 22 15 25 25 C 1.41255 * 132.11321 * 179.97438 * 24 23 22 26 26 Br 1.89099 * 120.25333 * 359.97438 * 25 24 23 27 27 C 1.35709 * 119.48988 * 179.34508 * 25 24 23 28 28 C 1.38902 * 119.01922 * 0.25606 * 8 7 6 29 29 N 1.31789 * 120.66275 * 359.47051 * 28 8 7 30 30 H 1.08998 * 109.46528 * 299.99735 * 1 2 3 31 31 H 1.08999 * 109.47255 * 59.99815 * 1 2 3 32 32 H 1.08995 * 109.46810 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47081 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47056 * 300.00307 * 3 2 1 35 35 H 1.08997 * 109.46786 * 59.99858 * 3 2 1 36 36 H 1.08996 * 109.46987 * 300.00670 * 4 2 1 37 37 H 1.09009 * 109.46665 * 59.99984 * 4 2 1 38 38 H 1.08996 * 109.47151 * 180.02562 * 4 2 1 39 39 H 1.08006 * 120.38213 * 359.96066 * 6 5 2 40 40 H 1.07998 * 120.81968 * 179.97438 * 7 6 5 41 41 H 0.97003 * 119.99776 * 214.96739 * 9 8 7 42 42 H 1.08004 * 119.74497 * 0.04662 * 13 12 10 43 43 H 1.08995 * 109.47322 * 89.71646 * 16 15 14 44 44 H 0.96694 * 114.00332 * 179.97438 * 17 16 15 45 45 H 1.08001 * 125.67132 * 180.24107 * 22 15 14 46 46 H 1.08000 * 120.23084 * 180.20258 * 27 25 24 47 47 H 1.07997 * 119.66958 * 179.74999 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4857 -0.8806 1.5252 6 6 2.7128 -2.2433 1.4803 7 6 3.1752 -2.8902 2.6149 8 6 3.3946 -2.1345 3.7639 9 7 3.8606 -2.7421 4.9345 10 6 4.7283 -3.7706 4.8606 11 8 5.0405 -4.2261 3.7772 12 6 5.2997 -4.3439 6.0943 13 6 6.1791 -5.3854 6.0198 14 7 6.7111 -5.9215 7.1501 15 6 7.5961 -6.9463 7.3587 16 6 8.2475 -7.7961 6.2981 17 8 7.3733 -7.9068 5.1731 18 14 8.5915 -9.4928 6.9864 19 1 9.2328 -10.3303 5.9412 20 1 7.3155 -10.1228 7.4110 21 1 9.4998 -9.3778 8.1556 22 6 7.7798 -7.0483 8.6923 23 7 7.0316 -6.1225 9.2987 24 6 6.3719 -5.4278 8.3845 25 6 5.4601 -4.3538 8.4865 26 35 4.9883 -3.6623 10.1821 27 6 4.9352 -3.8137 7.3576 28 6 3.1384 -0.7697 3.7319 29 7 2.7040 -0.1931 2.6294 30 1 -0.3632 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 3.5741 1.7564 -0.0005 34 1 2.1208 2.2703 -0.8900 35 1 2.1208 2.2702 0.8900 36 1 2.1206 -1.9059 -1.5212 37 1 2.1206 -0.3644 -2.4112 38 1 3.5740 -0.8787 -1.5209 39 1 2.5317 -2.7976 0.5712 40 1 3.3608 -3.9540 2.6085 41 1 3.5591 -2.4230 5.7996 42 1 6.4544 -5.7862 5.0554 43 1 9.1840 -7.3337 5.9865 44 1 7.7288 -8.4410 4.4498 45 1 8.4245 -7.7598 9.1867 46 1 4.2395 -2.9901 7.4215 47 1 3.3010 -0.1744 4.6181 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_22_16733946_12335884.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:46:41 Heat of formation + Delta-G solvation = 28.837841 kcal Electronic energy + Delta-G solvation = -32019.013311 eV Core-core repulsion = 27566.175842 eV Total energy + Delta-G solvation = -4452.837469 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 448.048 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.26445 -41.98865 -40.37516 -38.56083 -38.07660 -36.40883 -35.30944 -33.25129 -32.70685 -32.00431 -30.76487 -30.23316 -29.47309 -28.43364 -28.33323 -26.99166 -26.04054 -24.69114 -24.11205 -23.77501 -22.51598 -21.76184 -19.63551 -19.19798 -18.87528 -18.15918 -17.84578 -17.49403 -17.49034 -17.06488 -16.63222 -16.35759 -15.96275 -15.72016 -15.68114 -15.28634 -14.98802 -14.85426 -14.71395 -14.66828 -14.21725 -14.09056 -13.87093 -13.81153 -13.55962 -13.47126 -13.39143 -13.24614 -13.18311 -13.03246 -13.02651 -12.91851 -12.32071 -12.16360 -12.10258 -11.64862 -11.52951 -11.49383 -11.35030 -11.31232 -10.94275 -10.91532 -10.85007 -10.57866 -10.13826 -10.06985 -9.38316 -9.06990 -0.93399 -0.45885 -0.00097 0.18538 0.37929 0.73429 1.11248 1.19363 1.29188 1.35563 1.57462 1.70253 1.76549 1.80817 1.91068 1.96026 2.18229 2.53121 2.67925 2.84264 2.91148 3.04757 3.25710 3.35968 3.44610 3.68912 3.83969 3.92978 3.96334 4.05969 4.13727 4.19929 4.33576 4.39008 4.41257 4.62445 4.70538 4.73111 4.75859 4.78097 4.79611 4.87512 4.91771 4.93578 5.08129 5.19450 5.22534 5.46493 5.55088 5.55433 5.66887 5.72876 5.97343 6.18742 6.47987 6.69791 7.02979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.451 4.451 2 Si 1.103 2.897 3 C -0.443 4.443 4 C -0.455 4.455 5 C -0.176 4.176 6 C -0.132 4.132 7 C -0.086 4.086 8 C 0.099 3.901 9 N -0.661 5.661 10 C 0.581 3.419 11 O -0.511 6.511 12 C -0.181 4.181 13 C 0.185 3.815 14 N -0.352 5.352 15 C -0.037 4.037 16 C -0.053 4.053 17 O -0.554 6.554 18 Si 0.966 3.034 19 H -0.246 1.246 20 H -0.244 1.244 21 H -0.241 1.241 22 C 0.040 3.960 23 N -0.457 5.457 24 C 0.243 3.757 25 C -0.062 4.062 26 Br 0.011 6.989 27 C -0.043 4.043 28 C 0.065 3.935 29 N -0.429 5.429 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.138 0.862 40 H 0.148 0.852 41 H 0.414 0.586 42 H 0.195 0.805 43 H 0.087 0.913 44 H 0.392 0.608 45 H 0.193 0.807 46 H 0.154 0.846 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.574 -1.337 -2.767 3.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.558 4.558 2 Si 1.291 2.709 3 C -0.552 4.552 4 C -0.563 4.563 5 C -0.352 4.352 6 C -0.152 4.152 7 C -0.114 4.114 8 C 0.003 3.997 9 N -0.307 5.307 10 C 0.369 3.631 11 O -0.386 6.386 12 C -0.189 4.189 13 C 0.059 3.941 14 N -0.025 5.025 15 C -0.148 4.148 16 C -0.163 4.163 17 O -0.361 6.361 18 Si 0.784 3.216 19 H -0.169 1.169 20 H -0.166 1.166 21 H -0.165 1.165 22 C -0.110 4.110 23 N -0.175 5.175 24 C -0.002 4.002 25 C -0.144 4.144 26 Br 0.096 6.904 27 C -0.069 4.069 28 C -0.096 4.096 29 N -0.137 5.137 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.156 0.844 40 H 0.165 0.835 41 H 0.252 0.748 42 H 0.212 0.788 43 H 0.105 0.895 44 H 0.242 0.758 45 H 0.210 0.790 46 H 0.172 0.828 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 0.354 -0.988 -1.203 1.597 hybrid contribution 0.610 -1.105 -0.906 1.554 sum 0.964 -2.093 -2.110 3.125 Atomic orbital electron populations 1.26126 1.20290 1.04601 1.04818 0.77722 0.66501 0.65966 0.60725 1.26013 1.06279 1.18318 1.04574 1.26214 1.06665 1.08172 1.15202 1.30206 1.00657 0.97040 1.07325 1.22193 0.98046 0.96297 0.98683 1.21800 0.96014 1.01396 0.92167 1.18808 0.99932 0.93212 0.87764 1.43175 1.44777 1.34045 1.08721 1.17578 0.78188 0.79395 0.87979 1.90847 1.59832 1.59381 1.28552 1.19024 1.04903 1.01305 0.93675 1.22112 0.89915 0.90658 0.91455 1.42556 1.29745 1.23160 1.07057 1.20915 1.01683 0.95495 0.96681 1.24454 0.94555 1.08729 0.88526 1.86373 1.45230 1.76113 1.28410 0.85485 0.81758 0.73285 0.81063 1.16920 1.16627 1.16465 1.22468 1.00405 0.99379 0.88728 1.70876 1.10071 1.07555 1.29008 1.20410 1.00730 0.98587 0.80503 1.20422 1.01391 0.97983 0.94607 1.96867 1.90887 1.83318 1.19312 1.21045 0.97901 0.98642 0.89284 1.22924 0.98684 0.89731 0.98247 1.68155 1.08913 1.38396 0.98259 0.90919 0.90688 0.91219 0.91302 0.91231 0.90524 0.91068 0.90489 0.90948 0.84382 0.83481 0.74803 0.78820 0.89487 0.75828 0.79029 0.82810 0.82754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.63 8.65 101.05 0.87 1.51 16 2 Si 1.10 -2.16 12.77 -169.99 -2.17 -4.33 16 3 C -0.44 0.29 8.65 101.05 0.87 1.17 16 4 C -0.45 0.91 8.52 101.05 0.86 1.77 16 5 C -0.18 -0.15 5.36 -17.53 -0.09 -0.25 16 6 C -0.13 -0.11 9.32 -39.47 -0.37 -0.47 16 7 C -0.09 -0.16 8.81 -39.09 -0.34 -0.50 16 8 C 0.10 0.10 6.32 -83.56 -0.53 -0.42 16 9 N -0.66 0.61 5.29 -10.70 -0.06 0.55 16 10 C 0.58 0.50 7.62 -12.46 -0.09 0.40 16 11 O -0.51 -1.84 13.75 5.27 0.07 -1.77 16 12 C -0.18 -0.02 5.84 -105.38 -0.61 -0.64 16 13 C 0.19 0.20 9.91 -16.35 -0.16 0.03 16 14 N -0.35 -0.75 2.93 -58.09 -0.17 -0.92 16 15 C -0.04 -0.04 6.27 -81.43 -0.51 -0.55 16 16 C -0.05 0.11 3.05 36.01 0.11 0.22 16 17 O -0.55 1.14 10.89 -35.23 -0.38 0.76 16 18 Si 0.97 -2.52 26.61 -169.99 -4.52 -7.04 16 19 H -0.25 0.67 7.11 56.52 0.40 1.07 16 20 H -0.24 0.08 7.11 56.52 0.40 0.48 16 21 H -0.24 0.64 6.84 56.52 0.39 1.02 16 22 C 0.04 0.06 10.44 -17.94 -0.19 -0.12 16 23 N -0.46 -1.86 11.30 -12.70 -0.14 -2.00 16 24 C 0.24 0.79 7.59 -155.92 -1.18 -0.40 16 25 C -0.06 -0.09 6.24 -39.34 -0.25 -0.34 16 26 Br 0.01 0.01 33.72 -68.01 -2.29 -2.28 16 27 C -0.04 0.04 9.26 -39.14 -0.36 -0.33 16 28 C 0.06 0.06 11.12 -17.32 -0.19 -0.13 16 29 N -0.43 -0.89 9.84 20.60 0.20 -0.69 16 30 H 0.07 -0.05 7.96 -51.93 -0.41 -0.47 16 31 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 32 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 33 H 0.07 -0.01 7.96 -51.93 -0.41 -0.42 16 34 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 35 H 0.08 0.01 7.96 -51.93 -0.41 -0.41 16 36 H 0.07 -0.17 7.65 -51.93 -0.40 -0.57 16 37 H 0.08 -0.18 7.96 -51.92 -0.41 -0.59 16 38 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 39 H 0.14 -0.22 7.38 -52.48 -0.39 -0.61 16 40 H 0.15 0.33 6.31 -52.49 -0.33 0.00 16 41 H 0.41 -1.67 6.87 -40.82 -0.28 -1.96 16 42 H 0.20 0.12 6.20 -52.48 -0.33 -0.21 16 43 H 0.09 -0.35 7.96 -51.93 -0.41 -0.77 16 44 H 0.39 -2.53 8.74 45.56 0.40 -2.13 16 45 H 0.19 -0.27 6.72 -52.49 -0.35 -0.62 16 46 H 0.15 -0.64 6.45 -52.49 -0.34 -0.98 16 47 H 0.16 -0.26 8.06 -52.49 -0.42 -0.69 16 LS Contribution 417.19 15.07 6.29 6.29 Total: 0.00 -10.12 417.19 -10.32 -20.44 By element: Atomic # 1 Polarization: -4.99 SS G_CDS: -4.97 Total: -9.96 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -2.17 Total: 0.95 kcal Atomic # 7 Polarization: -2.89 SS G_CDS: -0.17 Total: -3.06 kcal Atomic # 8 Polarization: -0.69 SS G_CDS: -0.31 Total: -1.01 kcal Atomic # 14 Polarization: -4.67 SS G_CDS: -6.69 Total: -11.37 kcal Atomic # 35 Polarization: 0.01 SS G_CDS: -2.29 Total: -2.28 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -10.12 -10.32 -20.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16733946_12335884.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.275 kcal (2) G-P(sol) polarization free energy of solvation -10.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds