Wall clock time and date at job start Thu Mar 4 2021 13:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86301 * 109.47423 * 2 1 4 4 C 1.86305 * 109.47163 * 239.99839 * 2 1 3 5 5 C 1.86800 * 109.47265 * 120.00080 * 2 1 3 6 6 C 1.38228 * 119.53738 * 89.99709 * 5 2 1 7 7 C 1.38551 * 119.23982 * 179.97438 * 6 5 2 8 8 C 1.39254 * 118.35644 * 359.97438 * 7 6 5 9 9 N 1.39880 * 120.48565 * 179.97438 * 8 7 6 10 10 C 1.34777 * 120.00169 * 34.96578 * 9 8 7 11 11 O 1.21603 * 120.00016 * 355.31278 * 10 9 8 12 12 C 1.47547 * 119.99685 * 175.30672 * 10 9 8 13 13 C 1.36517 * 120.01181 * 180.02562 * 12 10 9 14 14 N 1.35947 * 120.50495 * 180.02562 * 13 12 10 15 15 C 1.37000 * 132.40855 * 180.02562 * 14 13 12 16 16 C 1.50701 * 126.42936 * 0.03073 * 15 14 13 17 17 O 1.42902 * 109.47295 * 329.71161 * 16 15 14 18 18 Si 1.86304 * 109.47163 * 209.71499 * 16 15 14 19 19 H 1.48500 * 109.47291 * 179.97438 * 18 16 15 20 20 H 1.48505 * 109.47077 * 59.99983 * 18 16 15 21 21 H 1.48495 * 109.47220 * 300.00223 * 18 16 15 22 22 C 1.35011 * 107.14187 * 179.77025 * 15 14 13 23 23 N 1.33586 * 108.65422 * 0.22611 * 22 15 14 24 24 C 1.32418 * 109.22062 * 359.97438 * 23 22 15 25 25 C 1.41255 * 132.11321 * 179.97438 * 24 23 22 26 26 Br 1.89099 * 120.25333 * 359.97438 * 25 24 23 27 27 C 1.35709 * 119.48988 * 179.34508 * 25 24 23 28 28 C 1.38902 * 119.01922 * 0.25606 * 8 7 6 29 29 N 1.31789 * 120.66275 * 359.47051 * 28 8 7 30 30 H 1.08998 * 109.46528 * 299.99735 * 1 2 3 31 31 H 1.08999 * 109.47255 * 59.99815 * 1 2 3 32 32 H 1.08995 * 109.46810 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47081 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47056 * 300.00307 * 3 2 1 35 35 H 1.08997 * 109.46786 * 59.99858 * 3 2 1 36 36 H 1.08996 * 109.46987 * 300.00670 * 4 2 1 37 37 H 1.09009 * 109.46665 * 59.99984 * 4 2 1 38 38 H 1.08996 * 109.47151 * 180.02562 * 4 2 1 39 39 H 1.08006 * 120.38213 * 359.96066 * 6 5 2 40 40 H 1.07998 * 120.81968 * 179.97438 * 7 6 5 41 41 H 0.97003 * 119.99776 * 214.96739 * 9 8 7 42 42 H 1.08004 * 119.74497 * 0.04662 * 13 12 10 43 43 H 1.08995 * 109.47322 * 89.71646 * 16 15 14 44 44 H 0.96694 * 114.00332 * 179.97438 * 17 16 15 45 45 H 1.08001 * 125.67132 * 180.24107 * 22 15 14 46 46 H 1.08000 * 120.23084 * 180.20258 * 27 25 24 47 47 H 1.07997 * 119.66958 * 179.74999 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4857 -0.8806 1.5252 6 6 2.7128 -2.2433 1.4803 7 6 3.1752 -2.8902 2.6149 8 6 3.3946 -2.1345 3.7639 9 7 3.8606 -2.7421 4.9345 10 6 4.7283 -3.7706 4.8606 11 8 5.0405 -4.2261 3.7772 12 6 5.2997 -4.3439 6.0943 13 6 6.1791 -5.3854 6.0198 14 7 6.7111 -5.9215 7.1501 15 6 7.5961 -6.9463 7.3587 16 6 8.2475 -7.7961 6.2981 17 8 7.3733 -7.9068 5.1731 18 14 8.5915 -9.4928 6.9864 19 1 9.2328 -10.3303 5.9412 20 1 7.3155 -10.1228 7.4110 21 1 9.4998 -9.3778 8.1556 22 6 7.7798 -7.0483 8.6923 23 7 7.0316 -6.1225 9.2987 24 6 6.3719 -5.4278 8.3845 25 6 5.4601 -4.3538 8.4865 26 35 4.9883 -3.6623 10.1821 27 6 4.9352 -3.8137 7.3576 28 6 3.1384 -0.7697 3.7319 29 7 2.7040 -0.1931 2.6294 30 1 -0.3632 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 3.5741 1.7564 -0.0005 34 1 2.1208 2.2703 -0.8900 35 1 2.1208 2.2702 0.8900 36 1 2.1206 -1.9059 -1.5212 37 1 2.1206 -0.3644 -2.4112 38 1 3.5740 -0.8787 -1.5209 39 1 2.5317 -2.7976 0.5712 40 1 3.3608 -3.9540 2.6085 41 1 3.5591 -2.4230 5.7996 42 1 6.4544 -5.7862 5.0554 43 1 9.1840 -7.3337 5.9865 44 1 7.7288 -8.4410 4.4498 45 1 8.4245 -7.7598 9.1867 46 1 4.2395 -2.9901 7.4215 47 1 3.3010 -0.1744 4.6181 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16733946_12335884.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:46:40 Heat of formation + Delta-G solvation = 32.924708 kcal Electronic energy + Delta-G solvation = -32018.836091 eV Core-core repulsion = 27566.175842 eV Total energy + Delta-G solvation = -4452.660249 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 448.048 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -44.32496 -42.04414 -40.42755 -38.56671 -37.94687 -36.47320 -35.35889 -33.30434 -32.75733 -32.01115 -30.78093 -30.27411 -29.35012 -28.27190 -28.23597 -26.93050 -26.09603 -24.73436 -24.14890 -23.81277 -22.55329 -21.81430 -19.66059 -19.23138 -18.72160 -18.17452 -17.86534 -17.52542 -17.50957 -17.10182 -16.64273 -16.27649 -15.97882 -15.76106 -15.66851 -15.26129 -14.95250 -14.90170 -14.68513 -14.58464 -14.19021 -14.02402 -13.74212 -13.72644 -13.49556 -13.43476 -13.38891 -13.11676 -13.08233 -13.06938 -12.92434 -12.85110 -12.15640 -12.11176 -12.03971 -11.74814 -11.60718 -11.49086 -11.40903 -11.39600 -10.82639 -10.77863 -10.73586 -10.63262 -10.17788 -10.11122 -9.40442 -9.10151 -0.99568 -0.47967 -0.03153 0.14012 0.31389 0.82658 1.09194 1.25252 1.47456 1.53393 1.65608 1.67337 1.78874 1.95575 2.05484 2.07841 2.14856 2.64042 2.71946 2.89214 2.95228 3.07335 3.26429 3.35490 3.48306 3.72539 3.85825 3.88673 3.98340 4.11580 4.21758 4.29091 4.32691 4.39772 4.43401 4.65858 4.76276 4.87587 4.89050 4.90943 4.91977 4.93552 4.94474 4.97389 5.04017 5.16005 5.19533 5.50207 5.62593 5.68172 5.71528 5.75564 6.02588 6.39601 6.62879 6.69075 6.99599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.459 4.459 2 Si 1.160 2.840 3 C -0.458 4.458 4 C -0.460 4.460 5 C -0.192 4.192 6 C -0.139 4.139 7 C -0.104 4.104 8 C 0.091 3.909 9 N -0.647 5.647 10 C 0.584 3.416 11 O -0.540 6.540 12 C -0.176 4.176 13 C 0.179 3.821 14 N -0.358 5.358 15 C -0.042 4.042 16 C -0.053 4.053 17 O -0.570 6.570 18 Si 1.003 2.997 19 H -0.239 1.239 20 H -0.282 1.282 21 H -0.240 1.240 22 C 0.025 3.975 23 N -0.491 5.491 24 C 0.224 3.776 25 C -0.080 4.080 26 Br 0.008 6.992 27 C -0.025 4.025 28 C 0.058 3.942 29 N -0.450 5.450 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.068 0.932 39 H 0.159 0.841 40 H 0.139 0.861 41 H 0.429 0.571 42 H 0.197 0.803 43 H 0.111 0.889 44 H 0.410 0.590 45 H 0.213 0.787 46 H 0.187 0.813 47 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.553 -1.068 -3.740 3.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.567 4.567 2 Si 1.344 2.656 3 C -0.565 4.565 4 C -0.568 4.568 5 C -0.366 4.366 6 C -0.159 4.159 7 C -0.132 4.132 8 C -0.005 4.005 9 N -0.294 5.294 10 C 0.372 3.628 11 O -0.418 6.418 12 C -0.183 4.183 13 C 0.053 3.947 14 N -0.031 5.031 15 C -0.153 4.153 16 C -0.162 4.162 17 O -0.381 6.381 18 Si 0.823 3.177 19 H -0.162 1.162 20 H -0.207 1.207 21 H -0.163 1.163 22 C -0.124 4.124 23 N -0.209 5.209 24 C -0.022 4.022 25 C -0.163 4.163 26 Br 0.093 6.907 27 C -0.050 4.050 28 C -0.102 4.102 29 N -0.158 5.158 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.087 0.913 39 H 0.176 0.824 40 H 0.157 0.843 41 H 0.270 0.730 42 H 0.214 0.786 43 H 0.129 0.871 44 H 0.263 0.737 45 H 0.229 0.771 46 H 0.204 0.796 47 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 0.351 -0.704 -2.157 2.296 hybrid contribution 0.590 -1.190 -0.642 1.475 sum 0.941 -1.895 -2.799 3.508 Atomic orbital electron populations 1.26227 1.20876 1.04778 1.04792 0.76904 0.65361 0.64082 0.59299 1.26208 1.05918 1.19915 1.04484 1.26256 1.06496 1.08746 1.15315 1.30916 1.00233 0.97367 1.08064 1.22483 0.97652 0.96550 0.99210 1.21917 0.96838 1.01279 0.93149 1.18876 1.00073 0.93422 0.88096 1.43038 1.43962 1.33257 1.09104 1.17621 0.78104 0.79409 0.87630 1.90837 1.60953 1.60402 1.29575 1.18989 1.04571 1.01024 0.93746 1.22247 0.90186 0.90980 0.91320 1.42687 1.30021 1.23444 1.06953 1.21488 1.01102 0.95253 0.97465 1.24594 0.94860 1.08626 0.88132 1.86331 1.45885 1.76788 1.29054 0.84974 0.79590 0.72238 0.80917 1.16167 1.20689 1.16270 1.22888 1.00686 0.99535 0.89243 1.70819 1.11256 1.08739 1.30123 1.20714 1.01330 0.99236 0.80888 1.20540 1.02178 0.98418 0.95122 1.96843 1.90834 1.83172 1.19842 1.21349 0.97131 0.98522 0.88029 1.23305 0.98184 0.89895 0.98841 1.68172 1.09631 1.39071 0.98946 0.91717 0.89954 0.90948 0.91997 0.90465 0.91469 0.90322 0.89817 0.91279 0.82381 0.84325 0.72999 0.78632 0.87142 0.73685 0.77060 0.79562 0.80503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.55 8.65 113.37 0.98 2.53 16 2 Si 1.16 -5.02 12.77 68.60 0.88 -4.14 16 3 C -0.46 0.55 8.65 113.37 0.98 1.53 16 4 C -0.46 2.30 8.52 113.37 0.97 3.27 16 5 C -0.19 -0.33 5.36 84.68 0.45 0.12 16 6 C -0.14 -0.23 9.32 22.34 0.21 -0.02 16 7 C -0.10 -0.44 8.81 22.59 0.20 -0.24 16 8 C 0.09 0.19 6.32 38.26 0.24 0.43 16 9 N -0.65 1.46 5.29 -306.03 -1.62 -0.16 16 10 C 0.58 1.06 7.62 86.70 0.66 1.72 16 11 O -0.54 -4.27 13.75 -4.04 -0.06 -4.33 16 12 C -0.18 -0.06 5.84 -20.35 -0.12 -0.18 16 13 C 0.18 0.49 9.91 83.65 0.83 1.32 16 14 N -0.36 -1.82 2.93 -337.69 -0.99 -2.81 16 15 C -0.04 -0.12 6.27 41.01 0.26 0.14 16 16 C -0.05 0.24 3.05 71.24 0.22 0.45 16 17 O -0.57 2.38 10.89 -148.98 -1.62 0.76 16 18 Si 1.00 -5.32 26.61 68.60 1.83 -3.49 16 19 H -0.24 1.55 7.11 99.48 0.71 2.26 16 20 H -0.28 -0.27 7.11 99.48 0.71 0.44 16 21 H -0.24 1.39 6.84 99.48 0.68 2.07 16 22 C 0.03 0.11 10.44 83.68 0.87 0.98 16 23 N -0.49 -4.67 11.30 -194.10 -2.19 -6.86 16 24 C 0.22 1.69 7.59 134.19 1.02 2.70 16 25 C -0.08 -0.27 6.24 22.43 0.14 -0.13 16 26 Br 0.01 0.02 33.72 -20.37 -0.69 -0.66 16 27 C -0.02 0.05 9.26 22.56 0.21 0.26 16 28 C 0.06 0.09 11.12 84.86 0.94 1.04 16 29 N -0.45 -1.89 9.84 -88.73 -0.87 -2.76 16 30 H 0.06 -0.10 7.96 -2.39 -0.02 -0.11 16 31 H 0.08 -0.39 7.96 -2.39 -0.02 -0.41 16 32 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 33 H 0.06 0.01 7.96 -2.39 -0.02 -0.01 16 34 H 0.08 -0.23 7.96 -2.39 -0.02 -0.25 16 35 H 0.07 0.05 7.96 -2.39 -0.02 0.03 16 36 H 0.08 -0.49 7.65 -2.39 -0.02 -0.51 16 37 H 0.08 -0.50 7.96 -2.38 -0.02 -0.52 16 38 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 39 H 0.16 -0.57 7.38 -2.91 -0.02 -0.59 16 40 H 0.14 0.78 6.31 -2.91 -0.02 0.76 16 41 H 0.43 -3.97 6.87 -92.71 -0.64 -4.61 16 42 H 0.20 0.39 6.20 -2.91 -0.02 0.37 16 43 H 0.11 -1.01 7.96 -2.39 -0.02 -1.03 16 44 H 0.41 -5.49 8.74 -74.06 -0.65 -6.13 16 45 H 0.21 -0.44 6.72 -2.91 -0.02 -0.46 16 46 H 0.19 -1.83 6.45 -2.91 -0.02 -1.85 16 47 H 0.18 -0.77 8.06 -2.91 -0.02 -0.79 16 Total: 0.00 -24.71 417.19 4.22 -20.49 By element: Atomic # 1 Polarization: -12.43 SS G_CDS: 0.50 Total: -11.93 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: 9.06 Total: 15.92 kcal Atomic # 7 Polarization: -6.93 SS G_CDS: -5.68 Total: -12.60 kcal Atomic # 8 Polarization: -1.89 SS G_CDS: -1.68 Total: -3.57 kcal Atomic # 14 Polarization: -10.34 SS G_CDS: 2.70 Total: -7.63 kcal Atomic # 35 Polarization: 0.02 SS G_CDS: -0.69 Total: -0.66 kcal Total: -24.71 4.22 -20.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16733946_12335884.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.413 kcal (2) G-P(sol) polarization free energy of solvation -24.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds