Wall clock time and date at job start Thu Mar 4 2021 13:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28471 * 124.87991 * 2 1 4 4 C 1.31822 * 110.07322 * 180.02562 * 3 2 1 5 5 C 1.47678 * 126.52079 * 180.02562 * 4 3 2 6 6 O 1.21583 * 119.99875 * 180.02562 * 5 4 3 7 7 N 1.34778 * 120.00015 * 0.02562 * 5 4 3 8 8 C 1.39878 * 119.99653 * 175.32503 * 7 5 4 9 9 C 1.39257 * 120.49537 * 34.97322 * 8 7 5 10 10 C 1.38535 * 118.36103 * 179.97438 * 9 8 7 11 11 C 1.38228 * 119.24211 * 359.97438 * 10 9 8 12 12 Si 1.86803 * 119.53850 * 179.97438 * 11 10 9 13 13 C 1.86292 * 109.47028 * 90.00378 * 12 11 10 14 14 C 1.86303 * 109.47135 * 210.00393 * 12 11 10 15 15 C 1.86301 * 109.47169 * 330.00433 * 12 11 10 16 16 N 1.31886 * 120.92792 * 0.02986 * 11 10 9 17 17 C 1.31799 * 121.79214 * 359.67210 * 16 11 10 18 18 C 1.41513 * 106.95484 * 359.74342 * 4 3 2 19 19 C 1.35037 * 124.88715 * 179.97438 * 2 1 3 20 20 C 1.50694 * 126.38368 * 359.97438 * 19 2 1 21 21 O 1.42902 * 109.47169 * 30.00445 * 20 19 2 22 22 Si 1.86297 * 109.47191 * 150.00222 * 20 19 2 23 23 H 1.48499 * 109.46979 * 60.00180 * 22 20 19 24 24 H 1.48501 * 109.47307 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47078 * 300.00246 * 22 20 19 26 26 H 1.09001 * 109.47318 * 269.99810 * 1 2 3 27 27 H 1.08998 * 109.47829 * 30.00539 * 1 2 3 28 28 H 1.09003 * 109.46888 * 150.00177 * 1 2 3 29 29 H 0.96998 * 119.99953 * 355.33837 * 7 5 4 30 30 H 1.08001 * 120.81507 * 359.97438 * 9 8 7 31 31 H 1.08001 * 120.37983 * 180.02562 * 10 9 8 32 32 H 1.09005 * 109.47100 * 60.00133 * 13 12 11 33 33 H 1.09002 * 109.47172 * 179.97438 * 13 12 11 34 34 H 1.08995 * 109.47435 * 299.99693 * 13 12 11 35 35 H 1.09001 * 109.46964 * 60.00121 * 14 12 11 36 36 H 1.08993 * 109.46928 * 179.97438 * 14 12 11 37 37 H 1.09001 * 109.46748 * 299.99996 * 14 12 11 38 38 H 1.08995 * 109.47359 * 59.99799 * 15 12 11 39 39 H 1.08995 * 109.47106 * 180.02562 * 15 12 11 40 40 H 1.09004 * 109.46949 * 299.99642 * 15 12 11 41 41 H 1.08000 * 119.66850 * 180.31421 * 17 16 11 42 42 H 1.08005 * 127.24166 * 180.26864 * 18 4 3 43 43 H 1.08998 * 109.47157 * 270.00207 * 20 19 2 44 44 H 0.96697 * 114.00104 * 59.99603 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1996 1.0539 0.0000 4 6 3.4741 0.7170 -0.0006 5 6 4.6270 1.6398 -0.0002 6 8 5.7596 1.1976 -0.0013 7 7 4.4238 2.9722 0.0013 8 6 5.5120 3.8455 0.1003 9 6 6.7296 3.5278 -0.4962 10 6 7.7777 4.4250 -0.3708 11 6 7.5826 5.5968 0.3359 12 14 8.9905 6.8121 0.5108 13 6 8.9471 8.0207 -0.9062 14 6 8.8178 7.7352 2.1198 15 6 10.6106 5.8924 0.4932 16 7 6.4168 5.8685 0.8895 17 6 5.3921 5.0456 0.7895 18 6 3.5271 -0.6971 0.0051 19 6 2.2373 -1.1077 0.0005 20 6 1.7535 -2.5348 0.0017 21 8 0.4953 -2.6118 -0.6715 22 14 2.9943 -3.6120 -0.8762 23 1 4.3017 -3.5321 -0.1766 24 1 2.5172 -5.0183 -0.8756 25 1 3.1528 -3.1442 -2.2766 26 1 -0.3634 0.0000 1.0277 27 1 -0.3635 0.8899 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 3.5230 3.3255 -0.0661 30 1 6.8536 2.6048 -1.0431 31 1 8.7361 4.2117 -0.8208 32 1 7.9992 8.5588 -0.8959 33 1 9.7683 8.7301 -0.8039 34 1 9.0481 7.4807 -1.8476 35 1 8.8432 7.0280 2.9489 36 1 9.6395 8.4439 2.2220 37 1 7.8699 8.2732 2.1301 38 1 10.7116 5.3524 -0.4482 39 1 11.4320 6.6015 0.5956 40 1 10.6359 5.1853 1.3223 41 1 4.4513 5.3047 1.2522 42 1 4.4108 -1.3180 0.0104 43 1 1.6371 -2.8782 1.0296 44 1 0.5240 -2.3210 -1.5933 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16733946_13259642.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:46:51 Heat of formation + Delta-G solvation = 11.936083 kcal Electronic energy + Delta-G solvation = -25580.752771 eV Core-core repulsion = 21851.678811 eV Total energy + Delta-G solvation = -3729.073960 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.137 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.97717 -41.79810 -40.10384 -38.14764 -36.31950 -34.53155 -33.18911 -32.76734 -31.04889 -29.38791 -28.55363 -28.28124 -28.24715 -26.84417 -25.22397 -24.66010 -23.32067 -22.35320 -21.07652 -19.57751 -18.56082 -17.86753 -17.66476 -17.59053 -17.19289 -16.96875 -16.16126 -15.98305 -15.75776 -15.64176 -15.28134 -14.98594 -14.90866 -14.43178 -14.22629 -14.04503 -13.75867 -13.74046 -13.67476 -13.49856 -13.46139 -13.09485 -13.07594 -12.93510 -12.62554 -12.47185 -12.15571 -12.08851 -11.85728 -11.72411 -11.51726 -10.90217 -10.83798 -10.74813 -10.67041 -10.31013 -10.21387 -10.04249 -9.40446 -0.20930 0.25091 0.38933 0.69279 1.06653 1.42517 1.48228 1.56597 1.67305 1.82979 1.94583 2.00682 2.06310 2.14238 2.62688 2.86208 3.02458 3.21634 3.28129 3.66223 3.84063 3.86595 4.07084 4.23326 4.28719 4.35094 4.42162 4.47064 4.52022 4.62189 4.75415 4.77461 4.86609 4.88357 4.90967 4.92720 4.93750 4.96384 5.00953 5.09065 5.15197 5.57653 5.61550 5.66804 5.70501 5.74302 6.05095 6.43095 6.64597 6.80426 6.95524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.254 5.254 3 N -0.259 5.259 4 C -0.041 4.041 5 C 0.607 3.393 6 O -0.544 6.544 7 N -0.647 5.647 8 C 0.090 3.910 9 C -0.107 4.107 10 C -0.137 4.137 11 C -0.194 4.194 12 Si 1.158 2.842 13 C -0.458 4.458 14 C -0.457 4.457 15 C -0.459 4.459 16 N -0.448 5.448 17 C 0.055 3.945 18 C -0.197 4.197 19 C -0.007 4.007 20 C -0.043 4.043 21 O -0.538 6.538 22 Si 1.001 2.999 23 H -0.261 1.261 24 H -0.255 1.255 25 H -0.262 1.262 26 H 0.095 0.905 27 H 0.104 0.896 28 H 0.139 0.861 29 H 0.429 0.571 30 H 0.137 0.863 31 H 0.161 0.839 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.068 0.932 41 H 0.173 0.827 42 H 0.167 0.833 43 H 0.146 0.854 44 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.113 -1.672 -1.905 4.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.043 5.043 3 N -0.098 5.098 4 C -0.199 4.199 5 C 0.395 3.605 6 O -0.419 6.419 7 N -0.293 5.293 8 C -0.006 4.006 9 C -0.135 4.135 10 C -0.157 4.157 11 C -0.368 4.368 12 Si 1.342 2.658 13 C -0.565 4.565 14 C -0.564 4.564 15 C -0.567 4.567 16 N -0.156 5.156 17 C -0.105 4.105 18 C -0.225 4.225 19 C -0.133 4.133 20 C -0.155 4.155 21 O -0.346 6.346 22 Si 0.822 3.178 23 H -0.186 1.186 24 H -0.179 1.179 25 H -0.186 1.186 26 H 0.113 0.887 27 H 0.123 0.877 28 H 0.157 0.843 29 H 0.268 0.732 30 H 0.154 0.846 31 H 0.179 0.821 32 H 0.083 0.917 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.104 0.896 40 H 0.087 0.913 41 H 0.190 0.810 42 H 0.185 0.815 43 H 0.164 0.836 44 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -4.026 -1.144 -1.295 4.381 hybrid contribution -0.336 -1.017 -0.642 1.249 sum -4.362 -2.161 -1.937 5.239 Atomic orbital electron populations 1.23022 0.70082 1.08225 1.06405 1.45781 1.09218 1.01554 1.47793 1.73473 1.02372 1.15045 1.18917 1.21439 0.90670 0.93995 1.13750 1.17169 0.86981 0.81371 0.74997 1.90788 1.23661 1.77410 1.50024 1.43151 1.10075 1.04569 1.71525 1.18981 0.89455 0.92866 0.99333 1.21912 0.93074 1.00546 0.97922 1.22496 1.00080 0.94211 0.98868 1.31059 1.05003 1.04886 0.95844 0.76953 0.60156 0.62307 0.66360 1.26204 1.04773 1.11588 1.13959 1.26194 1.04705 1.08615 1.16934 1.26239 1.16519 1.08943 1.05020 1.68172 0.99742 1.30615 1.17053 1.23228 1.00023 0.90628 0.96619 1.21701 0.97707 0.93476 1.09647 1.22234 0.90499 0.92689 1.07862 1.24755 0.94239 0.91191 1.05272 1.86471 1.29151 1.88561 1.30394 0.84949 0.76153 0.77816 0.78846 1.18555 1.17894 1.18604 0.88696 0.87717 0.84301 0.73212 0.84562 0.82100 0.91742 0.89756 0.90919 0.92041 0.90264 0.91503 0.90297 0.89631 0.91320 0.81015 0.81547 0.83618 0.75545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.51 11.00 127.77 1.41 0.90 16 2 N -0.25 0.17 3.70 -355.94 -1.32 -1.15 16 3 N -0.26 -1.02 11.68 -48.19 -0.56 -1.58 16 4 C -0.04 -0.29 7.13 42.45 0.30 0.01 16 5 C 0.61 6.00 7.68 86.74 0.67 6.66 16 6 O -0.54 -8.38 14.40 -3.98 -0.06 -8.44 16 7 N -0.65 -3.76 5.34 -305.91 -1.63 -5.39 16 8 C 0.09 0.72 6.32 38.26 0.24 0.96 16 9 C -0.11 -0.96 8.81 22.59 0.20 -0.76 16 10 C -0.14 -0.69 9.32 22.34 0.21 -0.48 16 11 C -0.19 -0.92 5.36 84.68 0.45 -0.47 16 12 Si 1.16 -2.83 12.77 68.60 0.88 -1.95 16 13 C -0.46 0.90 8.65 113.37 0.98 1.88 16 14 C -0.46 -0.18 8.65 113.37 0.98 0.80 16 15 C -0.46 1.57 8.52 113.37 0.97 2.54 16 16 N -0.45 -3.49 9.84 -88.72 -0.87 -4.36 16 17 C 0.06 0.36 11.13 84.86 0.94 1.31 16 18 C -0.20 -0.88 9.35 22.41 0.21 -0.67 16 19 C -0.01 0.01 6.17 41.40 0.26 0.26 16 20 C -0.04 0.27 2.99 71.23 0.21 0.49 16 21 O -0.54 4.64 10.02 -148.98 -1.49 3.15 16 22 Si 1.00 -4.18 26.64 68.60 1.83 -2.35 16 23 H -0.26 0.30 6.87 99.48 0.68 0.99 16 24 H -0.26 0.64 7.11 99.48 0.71 1.35 16 25 H -0.26 0.51 7.11 99.48 0.71 1.21 16 26 H 0.09 -0.88 8.14 -2.39 -0.02 -0.90 16 27 H 0.10 -1.05 8.14 -2.39 -0.02 -1.07 16 28 H 0.14 -1.66 5.00 -2.39 -0.01 -1.67 16 29 H 0.43 0.45 8.55 -92.71 -0.79 -0.34 16 30 H 0.14 1.46 6.32 -2.91 -0.02 1.44 16 31 H 0.16 -0.14 7.38 -2.91 -0.02 -0.16 16 32 H 0.06 0.00 7.96 -2.38 -0.02 -0.02 16 33 H 0.08 -0.32 7.96 -2.39 -0.02 -0.33 16 34 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 35 H 0.06 0.12 7.96 -2.39 -0.02 0.10 16 36 H 0.08 -0.15 7.96 -2.39 -0.02 -0.17 16 37 H 0.07 0.16 7.96 -2.39 -0.02 0.14 16 38 H 0.08 -0.37 7.65 -2.39 -0.02 -0.38 16 39 H 0.08 -0.41 7.96 -2.39 -0.02 -0.43 16 40 H 0.07 -0.15 7.96 -2.38 -0.02 -0.17 16 41 H 0.17 0.24 8.06 -2.91 -0.02 0.22 16 42 H 0.17 0.62 6.87 -2.91 -0.02 0.60 16 43 H 0.15 -1.30 7.96 -2.39 -0.02 -1.31 16 44 H 0.39 -5.67 8.39 -74.06 -0.62 -6.29 16 Total: 0.00 -21.19 372.73 5.15 -16.04 By element: Atomic # 1 Polarization: -7.74 SS G_CDS: 0.36 Total: -7.38 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: 8.03 Total: 13.42 kcal Atomic # 7 Polarization: -8.10 SS G_CDS: -4.39 Total: -12.48 kcal Atomic # 8 Polarization: -3.74 SS G_CDS: -1.55 Total: -5.29 kcal Atomic # 14 Polarization: -7.01 SS G_CDS: 2.70 Total: -4.30 kcal Total: -21.19 5.15 -16.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16733946_13259642.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.974 kcal (2) G-P(sol) polarization free energy of solvation -21.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds