Wall clock time and date at job start Thu Mar 4 2021 15:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86301 * 109.93172 * 2 1 4 4 C 1.87385 * 109.94632 * 121.17190 * 2 1 3 5 5 C 1.53705 * 107.28233 * 164.90461 * 4 2 1 6 6 C 1.52523 * 109.64538 * 300.87449 * 5 4 2 7 7 N 1.46494 * 109.04487 * 197.55625 * 6 5 4 8 8 C 1.34785 * 120.00210 * 155.00440 * 7 6 5 9 9 O 1.21591 * 119.99557 * 359.97438 * 8 7 6 10 10 C 1.47576 * 120.00229 * 179.97438 * 8 7 6 11 11 C 1.36495 * 120.00824 * 180.02562 * 10 8 7 12 12 N 1.35940 * 120.50290 * 179.97438 * 11 10 8 13 13 C 1.36999 * 132.41397 * 179.97438 * 12 11 10 14 14 C 1.50701 * 126.42589 * 0.02562 * 13 12 11 15 15 O 1.42896 * 109.47417 * 330.00365 * 14 13 12 16 16 Si 1.86301 * 109.47149 * 210.00349 * 14 13 12 17 17 H 1.48506 * 109.47302 * 59.99966 * 16 14 13 18 18 H 1.48503 * 109.47334 * 300.00099 * 16 14 13 19 19 H 1.48500 * 109.47376 * 180.02562 * 16 14 13 20 20 C 1.35004 * 107.14687 * 180.28179 * 13 12 11 21 21 N 1.33587 * 108.65456 * 359.57066 * 20 13 12 22 22 C 1.32419 * 109.22142 * 0.43301 * 21 20 13 23 23 C 1.41251 * 132.12097 * 179.70545 * 22 21 20 24 24 Br 1.89102 * 120.24963 * 0.05937 * 23 22 21 25 25 C 1.35702 * 119.49226 * 180.02562 * 23 22 21 26 26 C 1.52519 * 111.65691 * 76.98799 * 6 5 4 27 27 C 1.53715 * 109.64339 * 283.01757 * 26 6 5 28 28 H 1.09003 * 109.47343 * 298.82625 * 1 2 3 29 29 H 1.08998 * 109.47083 * 58.82698 * 1 2 3 30 30 H 1.08997 * 109.47305 * 178.82884 * 1 2 3 31 31 H 1.09008 * 109.46878 * 181.17047 * 3 2 1 32 32 H 1.09001 * 109.46899 * 301.16919 * 3 2 1 33 33 H 1.08999 * 109.47251 * 61.17778 * 3 2 1 34 34 H 1.09000 * 109.89107 * 45.45857 * 4 2 1 35 35 H 1.09004 * 109.95239 * 284.38718 * 4 2 1 36 36 H 1.09008 * 109.44013 * 180.82690 * 5 4 2 37 37 H 1.08994 * 109.44675 * 60.93040 * 5 4 2 38 38 H 1.09004 * 109.04030 * 316.50376 * 6 5 4 39 39 H 0.97001 * 120.00615 * 334.99119 * 7 6 5 40 40 H 1.07998 * 119.74527 * 359.97438 * 11 10 8 41 41 H 1.09002 * 109.46793 * 90.00818 * 14 13 12 42 42 H 0.96708 * 114.00095 * 299.99924 * 15 14 13 43 43 H 1.08000 * 125.67691 * 179.73129 * 20 13 12 44 44 H 1.08006 * 120.23209 * 179.97438 * 25 23 22 45 45 H 1.09003 * 109.43901 * 43.06500 * 26 6 5 46 46 H 1.08994 * 109.44348 * 162.95615 * 26 6 5 47 47 H 1.08999 * 109.88871 * 299.67308 * 27 26 6 48 48 H 1.08999 * 109.88932 * 178.56993 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4981 1.7514 0.0000 4 6 2.5022 -0.9117 1.5071 5 6 3.9900 -1.2107 1.2629 6 6 4.1432 -2.0547 0.0017 7 7 5.4684 -2.6790 0.0023 8 6 5.6761 -3.8202 -0.6841 9 8 4.7633 -4.3317 -1.3035 10 6 7.0113 -4.4488 -0.6840 11 6 7.2219 -5.6042 -1.3796 12 7 8.4478 -6.1916 -1.3867 13 6 8.9248 -7.3273 -1.9863 14 6 8.1410 -8.2775 -2.8546 15 8 6.7718 -8.2772 -2.4458 16 14 8.8399 -9.9959 -2.6827 17 1 8.7465 -10.4289 -1.2653 18 1 10.2629 -9.9964 -3.1076 19 1 8.0680 -10.9322 -3.5387 20 6 10.2273 -7.4386 -1.6489 21 7 10.5575 -6.4029 -0.8724 22 6 9.4940 -5.6339 -0.6959 23 6 9.2995 -4.4385 0.0310 24 35 10.7340 -3.6603 0.9864 25 6 8.0756 -3.8524 0.0379 26 6 3.9901 -1.2128 -1.2609 27 6 2.5022 -0.9141 -1.5055 28 1 -0.3634 0.4955 0.9003 29 1 -0.3633 0.5319 -0.8793 30 1 -0.3634 -1.0274 -0.0210 31 1 3.5879 1.7427 -0.0210 32 1 2.1219 2.2743 -0.8793 33 1 2.1562 2.2619 0.9003 34 1 1.9529 -1.8442 1.6371 35 1 2.3898 -0.2885 2.3943 36 1 4.3952 -1.7558 2.1156 37 1 4.5331 -0.2737 1.1406 38 1 3.3825 -2.8354 0.0017 39 1 6.1966 -2.2711 0.4966 40 1 6.4084 -6.0551 -1.9284 41 1 8.2097 -7.9597 -3.8950 42 1 6.6352 -8.5503 -1.5282 43 1 10.8924 -8.2315 -1.9576 44 1 7.9134 -2.9384 0.5900 45 1 4.5332 -0.2755 -1.1400 46 1 4.3954 -1.7591 -2.1125 47 1 1.9530 -1.8469 -1.6341 48 1 2.3901 -0.2913 -2.3930 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16807780_12335884.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 15:58:44 Heat of formation + Delta-G solvation = -14.408358 kcal Electronic energy + Delta-G solvation = -30445.941547 eV Core-core repulsion = 26285.795496 eV Total energy + Delta-G solvation = -4160.146052 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 425.068 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.29170 -41.32360 -38.75360 -38.11931 -37.71351 -35.38830 -34.16070 -32.42241 -31.97406 -31.79451 -30.27048 -29.16190 -28.30859 -27.15563 -26.84009 -24.99750 -24.11485 -23.45351 -22.58805 -21.72644 -21.54286 -19.51716 -18.72329 -18.26086 -17.80669 -17.54791 -17.06695 -16.44583 -16.30658 -16.08545 -15.89620 -15.80993 -15.45963 -15.13468 -14.99552 -14.78029 -14.46096 -14.00257 -13.89854 -13.72411 -13.44566 -13.39175 -13.32167 -13.27013 -13.13814 -13.05938 -13.01523 -12.91967 -12.71637 -12.47943 -12.11715 -12.10222 -12.07131 -11.71531 -11.56385 -11.37349 -11.35688 -11.26404 -10.88571 -10.69853 -10.39689 -10.34636 -10.08983 -9.96733 -9.10535 -0.91584 -0.39351 0.17537 0.87954 1.11172 1.35263 1.50676 1.56882 1.76098 1.89219 1.90874 1.97051 2.04398 2.08336 2.22985 2.72192 2.78610 3.06230 3.17510 3.37129 3.46173 3.47821 3.77174 3.84417 4.05666 4.13969 4.23411 4.27347 4.37597 4.42556 4.44096 4.49976 4.58553 4.67782 4.82633 4.83865 4.87411 4.90199 4.90761 4.93114 4.94771 5.21572 5.24198 5.27638 5.30105 5.35924 5.51960 5.52986 5.55422 5.63233 5.72642 6.35452 6.36251 6.46652 7.01441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.468 4.468 2 Si 1.060 2.940 3 C -0.456 4.456 4 C -0.409 4.409 5 C -0.115 4.115 6 C 0.137 3.863 7 N -0.704 5.704 8 C 0.576 3.424 9 O -0.564 6.564 10 C -0.169 4.169 11 C 0.160 3.840 12 N -0.357 5.357 13 C -0.084 4.084 14 C -0.053 4.053 15 O -0.551 6.551 16 Si 1.013 2.987 17 H -0.261 1.261 18 H -0.237 1.237 19 H -0.261 1.261 20 C 0.029 3.971 21 N -0.494 5.494 22 C 0.225 3.775 23 C -0.081 4.081 24 Br 0.006 6.994 25 C -0.023 4.023 26 C -0.118 4.118 27 C -0.421 4.421 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.415 0.585 40 H 0.195 0.805 41 H 0.137 0.863 42 H 0.389 0.611 43 H 0.211 0.789 44 H 0.186 0.814 45 H 0.084 0.916 46 H 0.042 0.958 47 H 0.065 0.935 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.516 2.544 2.223 3.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.574 4.574 2 Si 1.251 2.749 3 C -0.563 4.563 4 C -0.495 4.495 5 C -0.153 4.153 6 C 0.033 3.967 7 N -0.356 5.356 8 C 0.362 3.638 9 O -0.444 6.444 10 C -0.177 4.177 11 C 0.033 3.967 12 N -0.030 5.030 13 C -0.195 4.195 14 C -0.162 4.162 15 O -0.358 6.358 16 Si 0.832 3.168 17 H -0.185 1.185 18 H -0.160 1.160 19 H -0.185 1.185 20 C -0.120 4.120 21 N -0.213 5.213 22 C -0.020 4.020 23 C -0.164 4.164 24 Br 0.091 6.909 25 C -0.049 4.049 26 C -0.156 4.156 27 C -0.505 4.505 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.111 0.889 36 H 0.096 0.904 37 H 0.110 0.890 38 H 0.093 0.907 39 H 0.253 0.747 40 H 0.212 0.788 41 H 0.155 0.845 42 H 0.239 0.761 43 H 0.228 0.772 44 H 0.204 0.796 45 H 0.103 0.897 46 H 0.061 0.939 47 H 0.083 0.917 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.579 1.916 1.897 2.758 hybrid contribution -0.796 0.000 -0.140 0.808 sum -1.375 1.915 1.758 2.941 Atomic orbital electron populations 1.26323 1.22473 1.04201 1.04371 0.78628 0.64933 0.66031 0.65269 1.26204 1.06797 1.18859 1.04458 1.26274 0.99310 1.08612 1.15337 1.21493 0.97899 1.00494 0.95419 1.21172 0.83583 0.95794 0.96173 1.45916 1.14402 1.24247 1.51024 1.17582 0.86104 0.81006 0.79074 1.90846 1.44596 1.64397 1.44534 1.19302 0.95588 0.97721 1.05056 1.22275 0.86698 0.92461 0.95232 1.42711 1.08871 1.18113 1.33277 1.22464 0.97094 0.91921 1.08007 1.25078 0.84338 1.07005 0.99736 1.86500 1.23086 1.90993 1.35189 0.84821 0.79920 0.71363 0.80668 1.18506 1.16044 1.18481 1.22929 0.93296 0.98573 0.97191 1.70816 1.25101 1.05677 1.19727 1.20723 0.84314 0.97288 0.99670 1.20568 0.96164 0.95524 1.04119 1.96836 1.43427 1.79525 1.71114 1.21377 0.88443 0.99691 0.95349 1.21577 0.97301 1.00171 0.96551 1.26503 0.99642 1.08218 1.16121 0.91013 0.91605 0.91647 0.90604 0.91624 0.90920 0.90694 0.88950 0.90352 0.89027 0.90726 0.74685 0.78837 0.84503 0.76141 0.77242 0.79645 0.89736 0.93934 0.91655 0.90575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 1.60 8.65 113.37 0.98 2.58 16 2 Si 1.06 -7.51 11.60 68.60 0.80 -6.72 16 3 C -0.46 2.77 8.65 113.37 0.98 3.75 16 4 C -0.41 2.90 4.98 72.22 0.36 3.26 16 5 C -0.12 0.88 5.05 30.67 0.15 1.03 16 6 C 0.14 -0.40 2.03 44.67 0.09 -0.31 16 7 N -0.70 2.66 5.00 -447.17 -2.24 0.42 16 8 C 0.58 1.25 7.52 86.71 0.65 1.90 16 9 O -0.56 -5.57 15.94 -4.00 -0.06 -5.63 16 10 C -0.17 -0.08 5.84 -20.35 -0.12 -0.19 16 11 C 0.16 0.38 9.91 83.65 0.83 1.21 16 12 N -0.36 -1.42 2.93 -337.71 -0.99 -2.41 16 13 C -0.08 -0.14 6.25 41.01 0.26 0.12 16 14 C -0.05 0.16 3.06 71.24 0.22 0.38 16 15 O -0.55 0.91 10.90 -148.98 -1.62 -0.72 16 16 Si 1.01 -4.56 26.59 68.60 1.82 -2.73 16 17 H -0.26 0.60 7.11 99.48 0.71 1.31 16 18 H -0.24 1.28 6.84 99.48 0.68 1.96 16 19 H -0.26 0.44 7.11 99.48 0.71 1.15 16 20 C 0.03 0.10 10.44 83.68 0.87 0.97 16 21 N -0.49 -4.35 11.30 -194.10 -2.19 -6.54 16 22 C 0.23 1.52 7.59 134.18 1.02 2.54 16 23 C -0.08 -0.24 6.24 22.42 0.14 -0.10 16 24 Br 0.01 0.01 33.72 -20.37 -0.69 -0.67 16 25 C -0.02 0.05 9.26 22.55 0.21 0.26 16 26 C -0.12 0.21 5.18 30.68 0.16 0.37 16 27 C -0.42 0.98 4.98 72.22 0.36 1.34 16 28 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 29 H 0.06 -0.17 7.96 -2.39 -0.02 -0.19 16 30 H 0.06 -0.16 7.96 -2.39 -0.02 -0.18 16 31 H 0.07 -0.54 7.96 -2.38 -0.02 -0.55 16 32 H 0.06 -0.32 7.96 -2.39 -0.02 -0.33 16 33 H 0.07 -0.45 7.96 -2.39 -0.02 -0.47 16 34 H 0.07 -0.42 7.99 -2.39 -0.02 -0.44 16 35 H 0.09 -0.79 7.99 -2.39 -0.02 -0.81 16 36 H 0.08 -0.64 8.13 -2.38 -0.02 -0.66 16 37 H 0.09 -1.01 7.69 -2.39 -0.02 -1.03 16 38 H 0.07 0.11 7.34 -2.39 -0.02 0.09 16 39 H 0.41 -4.20 6.62 -92.71 -0.61 -4.81 16 40 H 0.19 0.47 6.19 -2.91 -0.02 0.45 16 41 H 0.14 -0.71 7.96 -2.39 -0.02 -0.73 16 42 H 0.39 -2.63 8.70 -74.05 -0.64 -3.27 16 43 H 0.21 -0.55 6.71 -2.91 -0.02 -0.57 16 44 H 0.19 -1.81 6.44 -2.91 -0.02 -1.83 16 45 H 0.08 -0.48 7.69 -2.39 -0.02 -0.49 16 46 H 0.04 0.15 7.92 -2.39 -0.02 0.13 16 47 H 0.06 0.03 7.99 -2.39 -0.02 0.01 16 48 H 0.08 -0.17 7.99 -2.39 -0.02 -0.19 16 Total: 0.00 -20.10 405.79 2.46 -17.64 By element: Atomic # 1 Polarization: -12.22 SS G_CDS: 0.48 Total: -11.74 kcal Atomic # 6 Polarization: 11.93 SS G_CDS: 7.16 Total: 19.09 kcal Atomic # 7 Polarization: -3.10 SS G_CDS: -5.42 Total: -8.53 kcal Atomic # 8 Polarization: -4.66 SS G_CDS: -1.69 Total: -6.35 kcal Atomic # 14 Polarization: -12.07 SS G_CDS: 2.62 Total: -9.45 kcal Atomic # 35 Polarization: 0.01 SS G_CDS: -0.69 Total: -0.67 kcal Total: -20.10 2.46 -17.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16807780_12335884.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.231 kcal (2) G-P(sol) polarization free energy of solvation -20.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds