Wall clock time and date at job start Thu Mar 4 2021 15:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28466 * 124.88680 * 2 1 4 4 C 1.31804 * 110.07639 * 180.02562 * 3 2 1 5 5 C 1.47716 * 126.52130 * 180.02562 * 4 3 2 6 6 O 1.21566 * 120.00274 * 180.02562 * 5 4 3 7 7 N 1.34779 * 119.99448 * 0.02562 * 5 4 3 8 8 C 1.46506 * 119.99461 * 180.02562 * 7 5 4 9 9 C 1.52522 * 109.04210 * 277.14791 * 8 7 5 10 10 C 1.53714 * 109.64102 * 162.44996 * 9 8 7 11 11 Si 1.87385 * 107.28005 * 59.12959 * 10 9 8 12 12 C 1.86309 * 109.94312 * 195.09660 * 11 10 9 13 13 C 1.86291 * 110.02036 * 73.88355 * 11 10 9 14 14 C 1.87376 * 107.00526 * 314.46533 * 11 10 9 15 15 C 1.52521 * 109.04114 * 154.99872 * 8 7 5 16 16 C 1.41501 * 106.96485 * 0.25555 * 4 3 2 17 17 C 1.35032 * 124.88573 * 179.97438 * 2 1 3 18 18 C 1.50700 * 126.38433 * 0.02562 * 17 2 1 19 19 O 1.42902 * 109.47157 * 329.99502 * 18 17 2 20 20 Si 1.86298 * 109.47296 * 209.99655 * 18 17 2 21 21 H 1.48500 * 109.47485 * 179.97438 * 20 18 17 22 22 H 1.48506 * 109.47048 * 300.00108 * 20 18 17 23 23 H 1.48505 * 109.46979 * 59.99680 * 20 18 17 24 24 H 1.08991 * 109.47399 * 90.02489 * 1 2 3 25 25 H 1.08999 * 109.47256 * 210.03144 * 1 2 3 26 26 H 1.09004 * 109.46811 * 330.02492 * 1 2 3 27 27 H 0.96995 * 120.00725 * 0.02562 * 7 5 4 28 28 H 1.08999 * 109.03018 * 36.03768 * 8 7 5 29 29 H 1.09002 * 109.44803 * 282.50488 * 9 8 7 30 30 H 1.09001 * 109.44302 * 42.40199 * 9 8 7 31 31 H 1.08992 * 109.89526 * 299.68233 * 10 9 8 32 32 H 1.09008 * 109.89253 * 178.56781 * 10 9 8 33 33 H 1.08994 * 109.46712 * 177.56011 * 12 11 10 34 34 H 1.08999 * 109.47054 * 297.56041 * 12 11 10 35 35 H 1.08993 * 109.47048 * 57.56078 * 12 11 10 36 36 H 1.09001 * 109.47186 * 302.39054 * 13 11 10 37 37 H 1.09005 * 109.47408 * 62.39386 * 13 11 10 38 38 H 1.09002 * 109.47069 * 182.39259 * 13 11 10 39 39 H 1.09004 * 109.89793 * 286.08906 * 14 11 10 40 40 H 1.09004 * 109.95754 * 165.01224 * 14 11 10 41 41 H 1.08998 * 109.44568 * 317.60023 * 15 8 7 42 42 H 1.09005 * 109.44226 * 77.49619 * 15 8 7 43 43 H 1.08000 * 127.25349 * 179.73695 * 16 4 3 44 44 H 1.08997 * 109.47746 * 89.99590 * 18 17 2 45 45 H 0.96694 * 114.00121 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1998 1.0538 0.0000 4 6 3.4740 0.7169 -0.0006 5 6 4.6273 1.6398 -0.0002 6 8 5.7597 1.1976 -0.0013 7 7 4.4241 2.9722 0.0013 8 6 5.5680 3.8876 0.0011 9 6 6.0700 4.0570 1.4313 10 6 7.4939 4.6357 1.4139 11 14 7.4145 6.2829 0.5240 12 6 9.1309 6.8354 0.0554 13 6 6.6123 7.5604 1.6173 14 6 6.3831 6.0232 -1.0186 15 6 5.1395 5.2193 -0.6066 16 6 3.5272 -0.6971 -0.0070 17 6 2.2373 -1.1077 0.0005 18 6 1.7534 -2.5349 0.0006 19 8 0.4952 -2.6112 0.6739 20 14 2.9942 -3.6113 0.8794 21 1 2.5171 -5.0176 0.8800 22 1 4.3017 -3.5320 0.1797 23 1 3.1528 -3.1422 2.2794 24 1 -0.3634 -0.0004 -1.0276 25 1 -0.3634 -0.8897 0.5143 26 1 -0.3633 0.8903 0.5135 27 1 3.5206 3.3250 0.0025 28 1 6.3655 3.4597 -0.6064 29 1 5.4089 4.7360 1.9699 30 1 6.0783 3.0879 1.9301 31 1 8.1629 3.9589 0.8825 32 1 7.8472 4.7823 2.4347 33 1 9.0723 7.7719 -0.4992 34 1 9.7238 6.9841 0.9579 35 1 9.6007 6.0736 -0.5665 36 1 5.6172 7.2202 1.9037 37 1 7.2182 7.7053 2.5117 38 1 6.5322 8.5031 1.0760 39 1 6.9568 5.4654 -1.7589 40 1 6.0823 6.9861 -1.4316 41 1 4.5194 5.0351 -1.4839 42 1 4.5680 5.7863 0.1284 43 1 4.4108 -1.3181 -0.0131 44 1 1.6370 -2.8792 -1.0270 45 1 0.1233 -3.5029 0.7125 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16807780_13259642.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 15:58:56 Heat of formation + Delta-G solvation = -35.712366 kcal Electronic energy + Delta-G solvation = -24035.374831 eV Core-core repulsion = 20598.801393 eV Total energy + Delta-G solvation = -3436.573438 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 311.158 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.85400 -40.83248 -38.00425 -37.85583 -34.58658 -33.86792 -32.67334 -32.01686 -29.23572 -28.66372 -28.31994 -27.07147 -26.25584 -24.03036 -23.45681 -22.18646 -21.52948 -20.68787 -18.63089 -18.45785 -17.58897 -17.41270 -17.20953 -16.27462 -16.15278 -15.81025 -15.42942 -15.32319 -14.99526 -14.86843 -14.23286 -14.01370 -13.90020 -13.74562 -13.56632 -13.43492 -13.36868 -13.29124 -13.14175 -13.05233 -12.99224 -12.90642 -12.51252 -12.38823 -12.14321 -12.03287 -11.80956 -11.74239 -11.37189 -10.87114 -10.71372 -10.42083 -10.39300 -10.15646 -9.97608 -9.87541 0.40046 0.72197 1.16197 1.43375 1.53544 1.59688 1.85120 1.97056 1.98877 2.04026 2.12953 2.25254 2.70080 3.01380 3.24298 3.53699 3.74270 3.99504 4.09871 4.20950 4.32018 4.35161 4.38510 4.41350 4.49895 4.53444 4.58858 4.63907 4.81047 4.84036 4.84473 4.86887 4.89148 4.89685 4.90992 5.15913 5.17655 5.23334 5.26278 5.36156 5.48534 5.51489 5.62432 5.67787 5.70639 6.36650 6.71818 6.80817 7.09028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.259 5.259 3 N -0.264 5.264 4 C -0.039 4.039 5 C 0.602 3.398 6 O -0.569 6.569 7 N -0.704 5.704 8 C 0.135 3.865 9 C -0.116 4.116 10 C -0.422 4.422 11 Si 1.061 2.939 12 C -0.462 4.462 13 C -0.454 4.454 14 C -0.411 4.411 15 C -0.113 4.113 16 C -0.210 4.210 17 C 0.030 3.970 18 C -0.044 4.044 19 O -0.556 6.556 20 Si 0.991 3.009 21 H -0.231 1.231 22 H -0.265 1.265 23 H -0.284 1.284 24 H 0.098 0.902 25 H 0.135 0.865 26 H 0.099 0.901 27 H 0.414 0.586 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.037 0.963 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.071 0.929 42 H 0.089 0.911 43 H 0.163 0.837 44 H 0.119 0.881 45 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.589 -0.692 -1.143 6.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.047 5.047 3 N -0.102 5.102 4 C -0.197 4.197 5 C 0.387 3.613 6 O -0.447 6.447 7 N -0.355 5.355 8 C 0.031 3.969 9 C -0.155 4.155 10 C -0.506 4.506 11 Si 1.252 2.748 12 C -0.569 4.569 13 C -0.561 4.561 14 C -0.496 4.496 15 C -0.151 4.151 16 C -0.238 4.238 17 C -0.096 4.096 18 C -0.155 4.155 19 O -0.368 6.368 20 Si 0.814 3.186 21 H -0.153 1.153 22 H -0.190 1.190 23 H -0.210 1.210 24 H 0.116 0.884 25 H 0.153 0.847 26 H 0.117 0.883 27 H 0.251 0.749 28 H 0.090 0.910 29 H 0.100 0.900 30 H 0.056 0.944 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.112 0.888 41 H 0.090 0.910 42 H 0.107 0.893 43 H 0.181 0.819 44 H 0.136 0.864 45 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -5.958 0.011 -0.662 5.995 hybrid contribution -0.006 -0.983 -0.171 0.998 sum -5.964 -0.973 -0.833 6.100 Atomic orbital electron populations 1.22880 0.70292 1.07727 1.05992 1.45738 1.09247 1.01662 1.48090 1.73439 1.02475 1.14870 1.19438 1.21777 0.91132 0.94150 1.12665 1.17067 0.86281 0.82353 0.75619 1.90771 1.23937 1.77857 1.52103 1.45966 1.11389 1.04579 1.73537 1.21197 0.88089 0.90312 0.97296 1.21565 0.97457 1.00826 0.95624 1.26553 0.97136 1.17926 1.08935 0.78623 0.65743 0.64600 0.65795 1.26249 1.19096 1.06065 1.05506 1.26173 1.07659 1.12230 1.10079 1.26327 1.04831 1.03313 1.15140 1.21464 0.99009 0.93142 1.01437 1.21604 0.97236 0.94020 1.10982 1.21203 0.90248 0.90977 1.07168 1.24259 0.94500 0.93057 1.03668 1.86231 1.34094 1.37287 1.79205 0.85120 0.77150 0.78103 0.78240 1.15329 1.18957 1.20969 0.88391 0.84692 0.88264 0.74895 0.90995 0.89959 0.94420 0.91679 0.90343 0.90763 0.91338 0.91601 0.90901 0.91343 0.90671 0.90727 0.88765 0.91017 0.89298 0.81912 0.86394 0.73592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.29 11.00 127.77 1.41 1.12 16 2 N -0.26 -1.06 3.70 -355.94 -1.32 -2.38 16 3 N -0.26 -2.15 11.67 -48.17 -0.56 -2.71 16 4 C -0.04 -0.45 7.13 42.46 0.30 -0.14 16 5 C 0.60 7.89 7.58 86.75 0.66 8.55 16 6 O -0.57 -11.21 16.59 -3.92 -0.07 -11.28 16 7 N -0.70 -4.59 5.04 -447.03 -2.26 -6.85 16 8 C 0.13 0.59 2.03 44.67 0.09 0.68 16 9 C -0.12 -0.51 5.18 30.68 0.16 -0.35 16 10 C -0.42 -0.78 4.98 72.22 0.36 -0.42 16 11 Si 1.06 -4.15 11.60 68.60 0.80 -3.36 16 12 C -0.46 0.72 8.65 113.37 0.98 1.71 16 13 C -0.45 1.58 8.65 113.37 0.98 2.56 16 14 C -0.41 1.20 4.98 72.22 0.36 1.55 16 15 C -0.11 0.16 5.05 30.68 0.15 0.31 16 16 C -0.21 -1.92 9.35 22.41 0.21 -1.71 16 17 C 0.03 0.12 6.20 41.40 0.26 0.37 16 18 C -0.04 0.20 2.98 71.24 0.21 0.41 16 19 O -0.56 4.39 9.76 -148.98 -1.45 2.93 16 20 Si 0.99 -2.24 26.65 68.60 1.83 -0.42 16 21 H -0.23 1.21 7.11 99.48 0.71 1.92 16 22 H -0.27 -0.34 6.87 99.48 0.68 0.34 16 23 H -0.28 -1.20 7.11 99.48 0.71 -0.49 16 24 H 0.10 -0.71 8.14 -2.39 -0.02 -0.72 16 25 H 0.14 -0.85 5.19 -2.39 -0.01 -0.86 16 26 H 0.10 -0.55 8.14 -2.38 -0.02 -0.57 16 27 H 0.41 1.06 8.31 -92.71 -0.77 0.29 16 28 H 0.07 0.61 7.34 -2.39 -0.02 0.59 16 29 H 0.08 0.04 7.69 -2.39 -0.02 0.02 16 30 H 0.04 0.39 7.92 -2.39 -0.02 0.37 16 31 H 0.06 0.29 7.99 -2.39 -0.02 0.27 16 32 H 0.08 0.09 7.99 -2.38 -0.02 0.07 16 33 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 34 H 0.07 -0.08 7.96 -2.39 -0.02 -0.10 16 35 H 0.06 -0.03 7.96 -2.39 -0.02 -0.05 16 36 H 0.07 -0.28 7.96 -2.39 -0.02 -0.29 16 37 H 0.07 -0.19 7.96 -2.38 -0.02 -0.21 16 38 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 39 H 0.07 -0.12 7.99 -2.39 -0.02 -0.13 16 40 H 0.09 -0.48 7.99 -2.39 -0.02 -0.50 16 41 H 0.07 -0.08 8.13 -2.39 -0.02 -0.10 16 42 H 0.09 -0.42 7.69 -2.38 -0.02 -0.44 16 43 H 0.16 1.37 6.87 -2.91 -0.02 1.35 16 44 H 0.12 -1.16 7.96 -2.39 -0.02 -1.18 16 45 H 0.41 -7.10 8.74 -74.06 -0.65 -7.74 16 Total: 0.00 -21.52 361.75 3.41 -18.11 By element: Atomic # 1 Polarization: -9.02 SS G_CDS: 0.31 Total: -8.71 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: 6.13 Total: 14.65 kcal Atomic # 7 Polarization: -7.80 SS G_CDS: -4.13 Total: -11.94 kcal Atomic # 8 Polarization: -6.82 SS G_CDS: -1.52 Total: -8.34 kcal Atomic # 14 Polarization: -6.40 SS G_CDS: 2.62 Total: -3.77 kcal Total: -21.52 3.41 -18.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16807780_13259642.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.602 kcal (2) G-P(sol) polarization free energy of solvation -21.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds