Wall clock time and date at job start Thu Mar 4 2021 17:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42903 * 109.47117 * 2 1 4 4 C 1.35904 * 117.00046 * 275.32455 * 3 2 1 5 5 C 1.38726 * 120.05322 * 5.08565 * 4 3 2 6 6 C 1.38148 * 119.94203 * 179.74313 * 5 4 3 7 7 C 1.38273 * 120.05262 * 0.50920 * 6 5 4 8 8 C 1.50693 * 119.94369 * 179.74462 * 7 6 5 9 9 O 1.42901 * 109.47448 * 245.02164 * 8 7 6 10 10 Si 1.86307 * 109.47222 * 5.02181 * 8 7 6 11 11 H 1.48508 * 109.46801 * 60.00074 * 10 8 7 12 12 H 1.48499 * 109.47149 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47084 * 300.00273 * 10 8 7 14 14 C 1.38265 * 120.11014 * 359.76545 * 7 6 5 15 15 C 1.38141 * 120.05805 * 359.97438 * 14 7 6 16 16 C 1.50696 * 109.47301 * 120.00324 * 2 1 3 17 17 O 1.21286 * 119.99930 * 244.99987 * 16 2 1 18 18 N 1.34778 * 119.99994 * 64.99678 * 16 2 1 19 19 C 1.47105 * 118.23352 * 359.97438 * 18 16 2 20 20 C 1.54340 * 117.93816 * 134.72112 * 19 18 16 21 21 C 1.49873 * 114.58479 * 314.26787 * 20 19 18 22 22 Si 1.88795 * 108.19223 * 84.44979 * 21 20 19 23 23 C 1.86296 * 109.44189 * 50.78257 * 22 21 20 24 24 C 1.86306 * 109.43951 * 170.70376 * 22 21 20 25 25 C 1.80381 * 109.65807 * 290.72014 * 22 21 20 26 26 C 1.42778 * 118.22907 * 180.02562 * 18 16 2 27 27 H 1.08994 * 109.47283 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46752 * 299.99994 * 1 2 3 29 29 H 1.08997 * 109.47087 * 59.99646 * 1 2 3 30 30 H 1.09004 * 109.46893 * 240.00543 * 2 1 3 31 31 H 1.07994 * 120.03159 * 359.97438 * 5 4 3 32 32 H 1.08000 * 119.97598 * 180.23473 * 6 5 4 33 33 H 1.08997 * 109.47408 * 125.01940 * 8 7 6 34 34 H 0.96706 * 113.99698 * 60.00259 * 9 8 7 35 35 H 1.08004 * 119.96775 * 179.97438 * 14 7 6 36 36 H 1.07994 * 120.02758 * 179.97438 * 15 14 7 37 37 H 1.09005 * 107.75267 * 256.89265 * 19 18 16 38 38 H 1.09007 * 107.75327 * 12.65343 * 19 18 16 39 39 H 1.09002 * 108.52505 * 192.90428 * 20 19 18 40 40 H 1.08991 * 108.40773 * 75.54923 * 20 19 18 41 41 H 1.08998 * 109.72455 * 324.75776 * 21 20 19 42 42 H 1.09005 * 109.72323 * 204.13954 * 21 20 19 43 43 H 1.09000 * 109.47569 * 59.99763 * 23 22 21 44 44 H 1.09007 * 109.47169 * 179.97438 * 23 22 21 45 45 H 1.09004 * 109.47043 * 299.99699 * 23 22 21 46 46 H 1.09004 * 109.47063 * 59.99684 * 24 22 21 47 47 H 1.08998 * 109.47084 * 180.02562 * 24 22 21 48 48 H 1.09004 * 109.47202 * 300.00087 * 24 22 21 49 49 H 1.09000 * 109.04907 * 178.31963 * 25 22 21 50 50 H 1.09003 * 109.04860 * 297.20920 * 25 22 21 51 51 H 1.09007 * 109.90519 * 157.52005 * 26 18 16 52 52 H 1.08993 * 109.97730 * 36.41036 * 26 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.1060 1.9665 -1.2057 5 6 1.6544 1.3304 -2.3528 6 6 1.7520 1.9641 -3.5765 7 6 2.3090 3.2269 -3.6599 8 6 2.4195 3.9135 -4.9967 9 8 3.7981 4.0835 -5.3325 10 14 1.5867 2.8741 -6.2995 11 1 0.1540 2.6975 -5.9506 12 1 1.6951 3.5510 -7.6168 13 1 2.2465 1.5456 -6.3692 14 6 2.7650 3.8606 -2.5187 15 6 2.6648 3.2333 -1.2920 16 6 2.0323 -0.7104 1.2304 17 8 2.6530 -0.0979 2.0734 18 7 1.7919 -2.0265 1.3940 19 6 1.0348 -2.7309 0.3478 20 6 1.5611 -4.1021 -0.1265 21 6 3.0353 -4.1460 -0.3927 22 14 3.9203 -4.4706 1.2430 23 6 3.1519 -5.9460 2.0817 24 6 5.7224 -4.8122 0.9159 25 6 3.7686 -3.0257 2.3122 26 6 2.2847 -2.6614 2.5741 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.2234 0.3423 -2.2888 32 1 1.3971 1.4709 -4.4694 33 1 1.9351 4.8886 -4.9456 34 1 4.2926 3.2548 -5.3956 35 1 3.2001 4.8468 -2.5865 36 1 3.0215 3.7286 -0.4011 37 1 0.0174 -2.8731 0.7124 38 1 0.9832 -2.0768 -0.5227 39 1 1.0368 -4.3766 -1.0418 40 1 1.3260 -4.8438 0.6369 41 1 3.3632 -3.1920 -0.8055 42 1 3.2582 -4.9476 -1.0971 43 1 3.2464 -6.8202 1.4375 44 1 3.6629 -6.1342 3.0260 45 1 2.0972 -5.7473 2.2721 46 1 6.1722 -3.9498 0.4239 47 1 6.2337 -5.0001 1.8600 48 1 5.8154 -5.6870 0.2723 49 1 4.2568 -3.2347 3.2641 50 1 4.2645 -2.1787 1.8380 51 1 1.7106 -3.5657 2.7763 52 1 2.2133 -1.9795 3.4214 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915400_10157680.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 17:29:31 Heat of formation + Delta-G solvation = -99.896194 kcal Electronic energy + Delta-G solvation = -30166.171491 eV Core-core repulsion = 26255.220703 eV Total energy + Delta-G solvation = -3910.950788 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 351.182 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.07693 -40.93651 -39.18977 -37.63843 -37.15399 -34.23392 -33.79451 -32.13531 -31.69888 -30.83100 -29.01973 -28.36558 -27.37809 -26.60262 -25.70829 -24.46292 -23.56796 -22.44686 -22.03766 -20.12918 -19.67049 -18.33805 -18.18944 -17.43421 -17.10961 -16.82367 -16.42033 -16.15437 -15.98395 -15.74853 -15.41611 -15.23706 -15.01807 -14.90742 -14.63227 -14.43248 -14.22478 -14.09126 -13.94964 -13.71429 -13.57086 -13.53054 -13.39656 -13.23207 -13.13270 -13.04212 -12.94006 -12.92045 -12.51775 -12.28168 -12.16899 -12.15105 -12.03823 -12.03192 -11.65909 -11.52512 -10.83163 -10.76674 -10.59926 -10.36247 -10.18186 -10.07149 -9.73555 -9.25284 0.23867 0.26675 1.21307 1.35374 1.47390 1.48553 1.55105 1.89090 1.94252 1.95023 2.02780 2.37758 2.62249 2.74575 3.17971 3.53179 3.58111 3.68006 3.76062 3.82017 3.85360 3.90508 4.09475 4.21745 4.25216 4.31050 4.32843 4.38508 4.51862 4.53954 4.58503 4.62122 4.70580 4.71536 4.74793 4.76391 4.87174 4.89427 4.93299 4.93658 4.96441 5.01785 5.09166 5.15225 5.21754 5.32591 5.36856 5.46959 5.50755 5.53280 5.62290 5.68957 5.75704 6.11721 6.32142 6.73460 7.00490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.061 3.939 3 O -0.314 6.314 4 C 0.120 3.880 5 C -0.204 4.204 6 C -0.086 4.086 7 C -0.159 4.159 8 C -0.079 4.079 9 O -0.555 6.555 10 Si 0.983 3.017 11 H -0.253 1.253 12 H -0.279 1.279 13 H -0.246 1.246 14 C -0.054 4.054 15 C -0.166 4.166 16 C 0.507 3.493 17 O -0.568 6.568 18 N -0.585 5.585 19 C 0.079 3.921 20 C -0.121 4.121 21 C -0.403 4.403 22 Si 1.072 2.928 23 C -0.453 4.453 24 C -0.472 4.472 25 C -0.468 4.468 26 C 0.127 3.873 27 H 0.116 0.884 28 H 0.059 0.941 29 H 0.089 0.911 30 H 0.125 0.875 31 H 0.158 0.842 32 H 0.143 0.857 33 H 0.121 0.879 34 H 0.388 0.612 35 H 0.141 0.859 36 H 0.127 0.873 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.090 0.910 43 H 0.074 0.926 44 H 0.064 0.936 45 H 0.080 0.920 46 H 0.057 0.943 47 H 0.061 0.939 48 H 0.074 0.926 49 H 0.079 0.921 50 H 0.052 0.948 51 H 0.114 0.886 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.925 -7.565 -4.598 10.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.002 3.998 3 O -0.228 6.228 4 C 0.074 3.926 5 C -0.222 4.222 6 C -0.104 4.104 7 C -0.160 4.160 8 C -0.189 4.189 9 O -0.362 6.362 10 Si 0.807 3.193 11 H -0.177 1.177 12 H -0.205 1.205 13 H -0.170 1.170 14 C -0.072 4.072 15 C -0.185 4.185 16 C 0.294 3.706 17 O -0.446 6.446 18 N -0.317 5.317 19 C -0.042 4.042 20 C -0.159 4.159 21 C -0.490 4.490 22 Si 1.263 2.737 23 C -0.561 4.561 24 C -0.577 4.577 25 C -0.551 4.551 26 C 0.004 3.996 27 H 0.134 0.866 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.142 0.858 31 H 0.175 0.825 32 H 0.160 0.840 33 H 0.139 0.861 34 H 0.237 0.763 35 H 0.158 0.842 36 H 0.145 0.855 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.118 0.882 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.109 0.891 43 H 0.093 0.907 44 H 0.084 0.916 45 H 0.099 0.901 46 H 0.076 0.924 47 H 0.080 0.920 48 H 0.093 0.907 49 H 0.098 0.902 50 H 0.071 0.929 51 H 0.132 0.868 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.141 -7.050 -4.539 9.835 hybrid contribution 0.938 0.184 0.924 1.330 sum -4.202 -6.865 -3.615 8.824 Atomic orbital electron populations 1.22593 0.90466 1.06282 1.04607 1.22467 0.97388 0.81967 0.97946 1.86197 1.81447 1.27033 1.28085 1.19264 0.95913 0.93052 0.84323 1.21431 1.06561 1.02580 0.91651 1.21086 0.97316 0.94110 0.97869 1.20379 1.03206 0.95881 0.96538 1.25032 0.88353 1.07701 0.97771 1.86491 1.20743 1.36825 1.92175 0.85223 0.79452 0.78202 0.76423 1.17685 1.20478 1.16985 1.20956 0.96037 0.99900 0.90291 1.20662 1.04216 0.94251 0.99352 1.20630 0.79356 0.83041 0.87548 1.90736 1.41487 1.66989 1.45434 1.47110 1.55568 1.07256 1.21761 1.22540 0.95419 0.95972 0.90277 1.21099 0.96152 0.95229 1.03411 1.25623 1.02415 1.05215 1.15710 0.77979 0.65198 0.64132 0.66384 1.26237 1.07598 1.14606 1.07634 1.26408 1.21934 1.04732 1.04642 1.27084 0.99283 1.16596 1.12091 1.20800 0.93695 0.98331 0.86796 0.86614 0.92195 0.89181 0.85808 0.82477 0.83987 0.86134 0.76292 0.84154 0.85541 0.88703 0.88702 0.88196 0.90463 0.91481 0.89095 0.90690 0.91641 0.90142 0.92390 0.91964 0.90726 0.90186 0.92874 0.86800 0.92585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.83 8.72 71.98 0.63 1.46 16 2 C 0.06 0.07 1.79 29.85 0.05 0.12 16 3 O -0.31 -2.75 9.34 -73.48 -0.69 -3.44 16 4 C 0.12 0.65 6.60 22.50 0.15 0.80 16 5 C -0.20 0.07 8.23 22.37 0.18 0.25 16 6 C -0.09 0.09 8.66 22.26 0.19 0.28 16 7 C -0.16 -0.10 5.35 -19.85 -0.11 -0.21 16 8 C -0.08 0.11 2.80 71.23 0.20 0.31 16 9 O -0.56 -0.27 12.83 -148.98 -1.91 -2.18 16 10 Si 0.98 -2.76 25.14 68.60 1.72 -1.03 16 11 H -0.25 0.60 7.11 99.48 0.71 1.31 16 12 H -0.28 -0.39 7.11 99.48 0.71 0.31 16 13 H -0.25 0.96 7.04 99.48 0.70 1.66 16 14 C -0.05 -0.16 9.68 22.25 0.22 0.05 16 15 C -0.17 -0.99 9.99 22.36 0.22 -0.77 16 16 C 0.51 3.20 6.63 87.66 0.58 3.78 16 17 O -0.57 -9.94 15.72 15.94 0.25 -9.69 16 18 N -0.58 0.68 2.45 -822.55 -2.01 -1.34 16 19 C 0.08 -0.74 4.50 86.72 0.39 -0.35 16 20 C -0.12 1.35 5.32 30.04 0.16 1.51 16 21 C -0.40 3.25 4.83 70.98 0.34 3.59 16 22 Si 1.07 -6.41 10.48 68.60 0.72 -5.69 16 23 C -0.45 3.03 8.35 113.37 0.95 3.98 16 24 C -0.47 0.71 8.65 113.37 0.98 1.70 16 25 C -0.47 -0.23 4.47 72.68 0.33 0.09 16 26 C 0.13 0.00 5.37 87.76 0.47 0.47 16 27 H 0.12 -1.26 5.16 -2.39 -0.01 -1.27 16 28 H 0.06 -0.01 8.14 -2.38 -0.02 -0.03 16 29 H 0.09 -0.58 6.91 -2.39 -0.02 -0.59 16 30 H 0.12 -0.59 5.33 -2.39 -0.01 -0.60 16 31 H 0.16 -1.04 5.43 -2.91 -0.02 -1.06 16 32 H 0.14 -0.75 4.86 -2.91 -0.01 -0.76 16 33 H 0.12 -0.31 7.96 -2.39 -0.02 -0.33 16 34 H 0.39 -2.28 8.70 -74.05 -0.64 -2.93 16 35 H 0.14 0.16 8.06 -2.91 -0.02 0.13 16 36 H 0.13 0.82 8.06 -2.91 -0.02 0.80 16 37 H 0.09 -1.25 7.67 -2.38 -0.02 -1.27 16 38 H 0.09 -1.16 4.51 -2.38 -0.01 -1.17 16 39 H 0.10 -1.40 8.14 -2.39 -0.02 -1.42 16 40 H 0.08 -0.97 5.94 -2.39 -0.01 -0.99 16 41 H 0.07 -0.41 7.90 -2.39 -0.02 -0.42 16 42 H 0.09 -0.86 7.99 -2.38 -0.02 -0.88 16 43 H 0.07 -0.53 7.96 -2.39 -0.02 -0.55 16 44 H 0.06 -0.33 7.96 -2.38 -0.02 -0.35 16 45 H 0.08 -0.70 6.53 -2.38 -0.02 -0.71 16 46 H 0.06 0.02 7.96 -2.39 -0.02 0.00 16 47 H 0.06 -0.02 7.96 -2.39 -0.02 -0.04 16 48 H 0.07 -0.20 7.96 -2.38 -0.02 -0.22 16 49 H 0.08 0.06 7.89 -2.39 -0.02 0.04 16 50 H 0.05 0.34 7.28 -2.39 -0.02 0.33 16 51 H 0.11 -0.76 7.14 -2.38 -0.02 -0.78 16 52 H 0.06 0.32 7.46 -2.39 -0.02 0.30 16 Total: 0.00 -22.87 394.03 5.05 -17.82 By element: Atomic # 1 Polarization: -12.53 SS G_CDS: 1.03 Total: -11.50 kcal Atomic # 6 Polarization: 11.12 SS G_CDS: 5.94 Total: 17.05 kcal Atomic # 7 Polarization: 0.68 SS G_CDS: -2.01 Total: -1.34 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: -2.35 Total: -15.31 kcal Atomic # 14 Polarization: -9.17 SS G_CDS: 2.44 Total: -6.72 kcal Total: -22.87 5.05 -17.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915400_10157680.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.074 kcal (2) G-P(sol) polarization free energy of solvation -22.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds