Wall clock time and date at job start Thu Mar 4 2021 17:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86301 * 109.00679 * 2 1 4 4 C 1.86974 * 109.02046 * 241.16910 * 2 1 3 5 5 C 1.54088 * 109.19828 * 199.18538 * 4 2 1 6 6 C 1.52939 * 108.12591 * 321.33236 * 5 4 2 7 7 N 1.45481 * 105.50414 * 102.39635 * 6 5 4 8 8 C 1.34779 * 116.96300 * 81.14343 * 7 6 5 9 9 O 1.21694 * 119.99780 * 183.75923 * 8 7 6 10 10 C 1.46678 * 120.00145 * 3.75741 * 8 7 6 11 11 C 1.37864 * 126.23575 * 166.45314 * 10 8 7 12 12 C 1.39837 * 107.08775 * 179.97438 * 11 10 8 13 13 C 1.50701 * 126.06620 * 179.73579 * 12 11 10 14 14 O 1.42899 * 109.47328 * 299.99921 * 13 12 11 15 15 Si 1.86292 * 109.47145 * 179.97438 * 13 12 11 16 16 H 1.48506 * 109.47075 * 59.99820 * 15 13 12 17 17 H 1.48500 * 109.47302 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47455 * 300.00467 * 15 13 12 19 19 C 1.35444 * 107.86244 * 359.97438 * 12 11 10 20 20 N 1.35532 * 108.87782 * 0.02562 * 19 12 11 21 21 C 1.42424 * 126.06730 * 260.85665 * 7 6 5 22 22 C 1.55252 * 107.47626 * 64.52337 * 21 7 6 23 23 H 1.09000 * 109.46990 * 301.09306 * 1 2 3 24 24 H 1.08996 * 109.47107 * 61.09320 * 1 2 3 25 25 H 1.08997 * 109.47094 * 181.09693 * 1 2 3 26 26 H 1.09000 * 109.46895 * 159.97222 * 3 2 1 27 27 H 1.08999 * 109.47234 * 279.97067 * 3 2 1 28 28 H 1.08994 * 109.47117 * 39.97542 * 3 2 1 29 29 H 1.09005 * 109.51544 * 319.10106 * 4 2 1 30 30 H 1.09000 * 109.51417 * 79.21136 * 4 2 1 31 31 H 1.08997 * 109.73556 * 81.04969 * 5 4 2 32 32 H 1.09003 * 109.73894 * 201.70249 * 5 4 2 33 33 H 1.09003 * 110.17373 * 343.49568 * 6 5 4 34 34 H 1.08996 * 110.45232 * 221.44795 * 6 5 4 35 35 H 1.08011 * 126.45535 * 359.93828 * 11 10 8 36 36 H 1.09007 * 109.47136 * 59.99686 * 13 12 11 37 37 H 0.96703 * 113.99956 * 300.00038 * 14 13 12 38 38 H 1.07999 * 125.56117 * 180.02562 * 19 12 11 39 39 H 0.96997 * 125.68076 * 180.02562 * 20 19 12 40 40 H 1.09008 * 109.85564 * 184.01382 * 21 7 6 41 41 H 1.08998 * 109.85781 * 304.95616 * 21 7 6 42 42 H 1.08991 * 109.51557 * 57.36736 * 22 21 7 43 43 H 1.09000 * 109.51497 * 177.52673 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4698 1.7614 0.0000 4 6 2.4724 -0.8524 -1.5486 5 6 3.9369 -1.2864 -1.3452 6 6 4.6551 -0.1855 -0.5634 7 7 4.7482 -0.6763 0.8029 8 6 5.7456 -1.5410 1.0751 9 8 5.8340 -2.0390 2.1819 10 6 6.7245 -1.8817 0.0372 11 6 7.9262 -2.5289 0.2313 12 6 8.5361 -2.6474 -1.0214 13 6 9.8732 -3.2841 -1.3005 14 8 10.8913 -2.5914 -0.5756 15 14 10.2366 -3.1909 -3.1253 16 1 10.2668 -1.7688 -3.5520 17 1 11.5544 -3.8178 -3.4003 18 1 9.1784 -3.9111 -3.8783 19 6 7.7143 -2.0836 -1.9386 20 7 6.6101 -1.6144 -1.3083 21 6 3.8869 -0.3237 1.8811 22 6 2.4671 -0.8470 1.5338 23 1 -0.3633 0.5307 0.8800 24 1 -0.3633 0.4967 -0.8996 25 1 -0.3633 -1.0274 0.0197 26 1 3.5010 1.7905 0.3520 27 1 2.4199 2.1629 -1.0121 28 1 1.8436 2.3614 0.6602 29 1 1.8569 -1.7298 -1.7475 30 1 2.4092 -0.1645 -2.3917 31 1 3.9695 -2.2195 -0.7828 32 1 4.4181 -1.4232 -2.3136 33 1 4.0745 0.7366 -0.5930 34 1 5.6518 -0.0171 -0.9712 35 1 8.3222 -2.8780 1.1736 36 1 9.8509 -4.3281 -0.9877 37 1 10.9683 -1.6547 -0.8034 38 1 7.9074 -2.0186 -2.9992 39 1 5.8632 -1.1655 -1.7344 40 1 4.2378 -0.7886 2.8025 41 1 3.8650 0.7597 1.9983 42 1 2.5070 -1.9228 1.3640 43 1 1.7882 -0.6328 2.3593 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915400_10543058.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 17:33:38 Heat of formation + Delta-G solvation = -1.795751 kcal Electronic energy + Delta-G solvation = -23153.235000 eV Core-core repulsion = 19939.095826 eV Total energy + Delta-G solvation = -3214.139174 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 296.147 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.03926 -40.86770 -38.25998 -37.58786 -34.50921 -32.65645 -31.77259 -30.32769 -29.23719 -28.73545 -27.20618 -26.40111 -24.79278 -23.04224 -22.31566 -21.07768 -20.78844 -19.07204 -17.90089 -17.58406 -16.99904 -16.71807 -16.09512 -15.81887 -15.38098 -15.21008 -15.06723 -14.79526 -14.62732 -14.52631 -14.15220 -14.03408 -13.78649 -13.61062 -13.59684 -13.45670 -13.19591 -12.96996 -12.80797 -12.65785 -12.31461 -12.09183 -12.03408 -11.96208 -11.67905 -11.25012 -10.81007 -10.55516 -10.51119 -10.32399 -9.96701 -9.75041 -9.27455 0.34175 1.28913 1.49038 1.58102 1.64195 1.77269 1.84059 1.89618 1.92129 2.05023 2.09986 2.25851 2.62743 3.35778 3.60869 3.71641 3.76350 3.95425 4.07524 4.11041 4.16562 4.28031 4.36415 4.44187 4.50169 4.63478 4.72749 4.76356 4.78912 4.79192 4.80871 4.88269 4.90240 4.91218 5.03347 5.14045 5.32891 5.40493 5.53152 5.57425 5.59665 5.64621 5.75398 6.11354 6.37344 6.86231 6.97382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.466 4.466 2 Si 1.067 2.933 3 C -0.471 4.471 4 C -0.413 4.413 5 C -0.146 4.146 6 C 0.033 3.967 7 N -0.591 5.591 8 C 0.572 3.428 9 O -0.574 6.574 10 C -0.068 4.068 11 C -0.101 4.101 12 C -0.220 4.220 13 C -0.058 4.058 14 O -0.562 6.562 15 Si 0.995 3.005 16 H -0.240 1.240 17 H -0.283 1.283 18 H -0.248 1.248 19 C 0.034 3.966 20 N -0.529 5.529 21 C 0.111 3.889 22 C -0.448 4.448 23 H 0.067 0.933 24 H 0.074 0.926 25 H 0.062 0.938 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.146 0.854 34 H 0.105 0.895 35 H 0.127 0.873 36 H 0.106 0.894 37 H 0.387 0.613 38 H 0.204 0.796 39 H 0.439 0.561 40 H 0.074 0.926 41 H 0.095 0.905 42 H 0.061 0.939 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.629 5.192 -8.053 10.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.572 4.572 2 Si 1.258 2.742 3 C -0.577 4.577 4 C -0.498 4.498 5 C -0.184 4.184 6 C -0.088 4.088 7 N -0.322 5.322 8 C 0.363 3.637 9 O -0.454 6.454 10 C -0.181 4.181 11 C -0.128 4.128 12 C -0.226 4.226 13 C -0.168 4.168 14 O -0.369 6.369 15 Si 0.816 3.184 16 H -0.162 1.162 17 H -0.208 1.208 18 H -0.172 1.172 19 C -0.104 4.104 20 N -0.139 5.139 21 C -0.012 4.012 22 C -0.532 4.532 23 H 0.086 0.914 24 H 0.093 0.907 25 H 0.081 0.919 26 H 0.096 0.904 27 H 0.106 0.894 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.120 0.880 31 H 0.080 0.920 32 H 0.110 0.890 33 H 0.163 0.837 34 H 0.122 0.878 35 H 0.145 0.855 36 H 0.124 0.876 37 H 0.236 0.764 38 H 0.221 0.779 39 H 0.294 0.706 40 H 0.093 0.907 41 H 0.113 0.887 42 H 0.080 0.920 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.604 4.531 -8.113 9.967 hybrid contribution -0.495 0.163 0.787 0.944 sum -4.099 4.693 -7.326 9.618 Atomic orbital electron populations 1.26332 1.22091 1.04162 1.04662 0.78358 0.65232 0.66032 0.64602 1.26703 1.06011 1.19097 1.05915 1.26556 0.98276 1.08494 1.16523 1.22281 0.97569 0.97984 1.00577 1.23221 1.04219 1.01230 0.80169 1.46831 1.29565 1.44417 1.11353 1.17663 0.80735 0.79083 0.86245 1.90813 1.75179 1.54686 1.24749 1.20136 0.99844 1.13842 0.84277 1.21214 0.93152 0.99717 0.98689 1.20014 0.99944 1.09552 0.93136 1.24587 0.83962 0.98196 1.10073 1.86472 1.54959 1.27767 1.67685 0.85121 0.79548 0.81539 0.72157 1.16241 1.20812 1.17186 1.22432 0.88053 1.00447 0.99490 1.43751 1.19237 1.45159 1.05785 1.21020 0.89143 1.01191 0.89853 1.27276 1.00077 1.07478 1.18331 0.91421 0.90711 0.91866 0.90422 0.89437 0.90650 0.90342 0.87963 0.91976 0.88977 0.83679 0.87794 0.85453 0.87571 0.76444 0.77909 0.70631 0.90738 0.88682 0.91959 0.89212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 2.41 8.65 113.37 0.98 3.39 16 2 Si 1.07 -9.01 10.05 68.60 0.69 -8.32 16 3 C -0.47 4.31 7.38 113.37 0.84 5.15 16 4 C -0.41 3.77 5.09 72.35 0.37 4.14 16 5 C -0.15 1.09 4.39 30.94 0.14 1.22 16 6 C 0.03 -0.22 4.96 86.55 0.43 0.20 16 7 N -0.59 -0.52 2.18 -834.47 -1.82 -2.34 16 8 C 0.57 4.99 6.95 86.45 0.60 5.59 16 9 O -0.57 -10.25 15.92 -4.33 -0.07 -10.32 16 10 C -0.07 -0.37 6.43 40.35 0.26 -0.11 16 11 C -0.10 -0.78 10.62 22.57 0.24 -0.54 16 12 C -0.22 -0.42 5.44 -20.12 -0.11 -0.53 16 13 C -0.06 -0.03 3.02 71.24 0.22 0.18 16 14 O -0.56 -1.79 12.88 -148.98 -1.92 -3.71 16 15 Si 0.99 -3.48 25.87 68.60 1.77 -1.71 16 16 H -0.24 1.35 7.11 99.48 0.71 2.06 16 17 H -0.28 -0.43 7.11 99.48 0.71 0.27 16 18 H -0.25 1.02 7.11 99.48 0.71 1.73 16 19 C 0.03 -0.12 10.45 83.48 0.87 0.76 16 20 N -0.53 1.53 4.51 -183.63 -0.83 0.70 16 21 C 0.11 0.12 5.82 87.90 0.51 0.64 16 22 C -0.45 0.87 4.96 72.76 0.36 1.23 16 23 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 24 H 0.07 -0.44 7.96 -2.39 -0.02 -0.46 16 25 H 0.06 -0.24 7.96 -2.39 -0.02 -0.26 16 26 H 0.08 -0.71 4.90 -2.39 -0.01 -0.72 16 27 H 0.09 -0.98 7.96 -2.39 -0.02 -1.00 16 28 H 0.07 -0.61 7.96 -2.39 -0.02 -0.63 16 29 H 0.08 -0.61 7.97 -2.38 -0.02 -0.63 16 30 H 0.10 -1.28 7.97 -2.39 -0.02 -1.30 16 31 H 0.06 -0.14 7.38 -2.39 -0.02 -0.15 16 32 H 0.09 -1.09 6.71 -2.39 -0.02 -1.11 16 33 H 0.15 -1.58 2.83 -2.39 -0.01 -1.59 16 34 H 0.10 -0.90 4.92 -2.39 -0.01 -0.92 16 35 H 0.13 1.46 8.06 -2.90 -0.02 1.43 16 36 H 0.11 0.12 7.96 -2.38 -0.02 0.10 16 37 H 0.39 -1.54 8.70 -74.06 -0.64 -2.19 16 38 H 0.20 -2.19 6.19 -2.91 -0.02 -2.21 16 39 H 0.44 -3.75 2.78 -92.71 -0.26 -4.01 16 40 H 0.07 0.57 6.56 -2.38 -0.02 0.55 16 41 H 0.10 -0.34 6.56 -2.39 -0.02 -0.35 16 42 H 0.06 0.11 7.96 -2.39 -0.02 0.09 16 43 H 0.09 -0.24 7.96 -2.39 -0.02 -0.26 16 Total: 0.00 -20.66 322.13 4.43 -16.24 By element: Atomic # 1 Polarization: -12.75 SS G_CDS: 0.89 Total: -11.86 kcal Atomic # 6 Polarization: 15.62 SS G_CDS: 5.70 Total: 21.32 kcal Atomic # 7 Polarization: 1.00 SS G_CDS: -2.65 Total: -1.64 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: -1.99 Total: -14.03 kcal Atomic # 14 Polarization: -12.49 SS G_CDS: 2.46 Total: -10.03 kcal Total: -20.66 4.43 -16.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915400_10543058.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.443 kcal (2) G-P(sol) polarization free energy of solvation -20.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds