Wall clock time and date at job start Thu Mar 4 2021 17:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.35535 * 125.67889 * 2 1 4 4 C 1.35458 * 108.87342 * 179.75188 * 3 2 1 5 5 C 1.50692 * 126.06688 * 180.26620 * 4 3 2 6 6 O 1.42902 * 109.47010 * 244.97544 * 5 4 3 7 7 Si 1.86295 * 109.47393 * 4.97405 * 5 4 3 8 8 H 1.48493 * 109.47216 * 60.00197 * 7 5 4 9 9 H 1.48502 * 109.47275 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47077 * 300.00196 * 7 5 4 11 11 C 1.39833 * 107.86048 * 0.22844 * 4 3 2 12 12 C 1.37651 * 125.67922 * 180.14571 * 2 1 3 13 13 C 1.46682 * 126.23252 * 0.02562 * 12 2 1 14 14 O 1.21695 * 119.99819 * 345.35376 * 13 12 2 15 15 N 1.34780 * 119.99819 * 165.35049 * 13 12 2 16 16 C 1.45479 * 116.96697 * 5.22899 * 15 13 12 17 17 C 1.52937 * 105.50283 * 81.14108 * 16 15 13 18 18 C 1.54090 * 108.12740 * 102.39987 * 17 16 15 19 19 Si 1.86976 * 109.19362 * 321.32992 * 18 17 16 20 20 C 1.86296 * 109.02113 * 199.18437 * 19 18 17 21 21 C 1.86303 * 108.95746 * 80.32655 * 19 18 17 22 22 C 1.85326 * 111.77324 * 319.77604 * 19 18 17 23 23 C 1.42427 * 116.96500 * 185.48760 * 15 13 12 24 24 H 1.09006 * 109.47225 * 86.58394 * 1 2 3 25 25 H 1.08998 * 109.47259 * 206.58337 * 1 2 3 26 26 H 1.08999 * 109.47242 * 326.58650 * 1 2 3 27 27 H 1.07995 * 125.56327 * 0.02562 * 3 2 1 28 28 H 1.08998 * 109.47420 * 124.97812 * 5 4 3 29 29 H 0.96698 * 114.00152 * 60.00175 * 6 5 4 30 30 H 1.08000 * 126.45303 * 180.02562 * 11 4 3 31 31 H 1.08994 * 110.17769 * 200.04247 * 16 15 13 32 32 H 1.08995 * 110.18363 * 321.91415 * 16 15 13 33 33 H 1.08995 * 109.77974 * 342.70197 * 17 16 15 34 34 H 1.09002 * 109.70349 * 222.04566 * 17 16 15 35 35 H 1.09004 * 109.51797 * 201.41445 * 18 17 16 36 36 H 1.08995 * 109.56394 * 81.27439 * 18 17 16 37 37 H 1.09002 * 109.47345 * 182.26550 * 20 19 18 38 38 H 1.09002 * 109.47627 * 302.26759 * 20 19 18 39 39 H 1.09006 * 109.47355 * 62.26520 * 20 19 18 40 40 H 1.08995 * 109.46933 * 278.60097 * 21 19 18 41 41 H 1.09003 * 109.47282 * 38.60704 * 21 19 18 42 42 H 1.08997 * 109.46859 * 158.60573 * 21 19 18 43 43 H 1.09002 * 109.51444 * 324.75720 * 22 19 18 44 44 H 1.08999 * 109.51350 * 204.60849 * 22 19 18 45 45 H 1.09005 * 109.85879 * 3.72927 * 23 15 13 46 46 H 1.08998 * 109.85796 * 124.67120 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2554 1.1009 0.0000 4 6 3.5521 0.7093 0.0056 5 6 4.7536 1.6189 0.0131 6 8 5.4832 1.4543 -1.2045 7 14 4.1918 3.3885 0.1661 8 1 3.4336 3.5596 1.4313 9 1 5.3758 4.2849 0.1729 10 1 3.3183 3.7318 -0.9847 11 6 3.5779 -0.6888 0.0039 12 6 2.2678 -1.1181 -0.0028 13 6 1.8123 -2.5124 -0.0069 14 8 0.6540 -2.7750 0.2584 15 7 2.6767 -3.5028 -0.3046 16 6 4.0691 -3.1276 -0.4965 17 6 4.6590 -3.0125 0.9099 18 6 5.4893 -4.2807 1.1868 19 14 4.6099 -5.7621 0.4600 20 6 5.2625 -7.3105 1.2645 21 6 4.9581 -5.8355 -1.3687 22 6 2.7777 -5.6710 0.7229 23 6 2.1409 -4.8184 -0.4076 24 1 -0.3634 0.0612 -1.0259 25 1 -0.3634 -0.9190 0.4599 26 1 -0.3634 0.8578 0.5659 27 1 1.9081 2.1235 0.0004 28 1 5.3948 1.3669 0.8578 29 1 4.9735 1.6616 -1.9996 30 1 4.4582 -1.3144 0.0076 31 1 4.5920 -3.8993 -1.0614 32 1 4.1329 -2.1714 -1.0156 33 1 3.8552 -2.9317 1.6415 34 1 5.2999 -2.1328 0.9687 35 1 5.6009 -4.4151 2.2627 36 1 6.4731 -4.1802 0.7284 37 1 4.7835 -8.1817 0.8176 38 1 6.3404 -7.3715 1.1143 39 1 5.0454 -7.2843 2.3324 40 1 4.2932 -5.1491 -1.8929 41 1 5.9938 -5.5502 -1.5531 42 1 4.7909 -6.8502 -1.7299 43 1 2.5708 -5.2087 1.6881 44 1 2.3565 -6.6761 0.7022 45 1 1.0584 -4.7881 -0.2835 46 1 2.3901 -5.2447 -1.3793 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915400_10803934.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 17:33:48 Heat of formation + Delta-G solvation = 5.982204 kcal Electronic energy + Delta-G solvation = -25514.353569 eV Core-core repulsion = 22145.014054 eV Total energy + Delta-G solvation = -3369.339515 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 310.163 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.91092 -40.91603 -38.20344 -37.55158 -34.53368 -33.73516 -32.16494 -30.13056 -29.16812 -28.69684 -28.37845 -26.99626 -25.54336 -24.66200 -22.90772 -22.16787 -21.07540 -19.90576 -18.40456 -18.00211 -17.35960 -16.97107 -16.65632 -16.26649 -15.72128 -15.66890 -15.53211 -15.06211 -14.87441 -14.63120 -14.51173 -14.37913 -14.14050 -13.76161 -13.64014 -13.52679 -13.30802 -13.18561 -13.16665 -12.92279 -12.71989 -12.65670 -12.45278 -12.27101 -12.09526 -11.86856 -11.73727 -11.56072 -11.03129 -10.74306 -10.45855 -10.40852 -10.22984 -9.72018 -9.56589 -9.22952 0.39918 1.30639 1.49151 1.53734 1.60331 1.64590 1.89853 1.93816 1.96494 2.01555 2.22728 2.27710 2.69451 3.39260 3.74654 3.82432 3.92578 3.98161 4.06102 4.19265 4.25530 4.29578 4.32744 4.36816 4.49021 4.59732 4.65805 4.68314 4.74617 4.79036 4.81367 4.82773 4.84137 4.85822 4.94347 4.95659 5.10639 5.18280 5.32630 5.39342 5.49772 5.59996 5.64766 5.68856 5.76229 5.90497 6.13439 6.23350 6.88142 7.06528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.415 5.415 3 C 0.018 3.982 4 C -0.218 4.218 5 C -0.039 4.039 6 O -0.553 6.553 7 Si 0.977 3.023 8 H -0.262 1.262 9 H -0.276 1.276 10 H -0.252 1.252 11 C -0.140 4.140 12 C -0.078 4.078 13 C 0.569 3.431 14 O -0.588 6.588 15 N -0.579 5.579 16 C 0.033 3.967 17 C -0.131 4.131 18 C -0.418 4.418 19 Si 1.061 2.939 20 C -0.464 4.464 21 C -0.468 4.468 22 C -0.443 4.443 23 C 0.113 3.887 24 H 0.084 0.916 25 H 0.088 0.912 26 H 0.107 0.893 27 H 0.186 0.814 28 H 0.120 0.880 29 H 0.386 0.614 30 H 0.200 0.800 31 H 0.132 0.868 32 H 0.122 0.878 33 H 0.056 0.944 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.061 0.939 44 H 0.090 0.910 45 H 0.076 0.924 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.869 0.743 -1.896 3.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.087 5.087 3 C -0.119 4.119 4 C -0.224 4.224 5 C -0.151 4.151 6 O -0.360 6.360 7 Si 0.802 3.198 8 H -0.187 1.187 9 H -0.201 1.201 10 H -0.175 1.175 11 C -0.165 4.165 12 C -0.190 4.190 13 C 0.361 3.639 14 O -0.471 6.471 15 N -0.308 5.308 16 C -0.087 4.087 17 C -0.169 4.169 18 C -0.503 4.503 19 Si 1.253 2.747 20 C -0.571 4.571 21 C -0.575 4.575 22 C -0.527 4.527 23 C -0.010 4.010 24 H 0.103 0.897 25 H 0.106 0.894 26 H 0.125 0.875 27 H 0.203 0.797 28 H 0.138 0.862 29 H 0.235 0.765 30 H 0.216 0.784 31 H 0.149 0.851 32 H 0.139 0.861 33 H 0.075 0.925 34 H 0.109 0.891 35 H 0.092 0.908 36 H 0.112 0.888 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.096 0.904 41 H 0.102 0.898 42 H 0.093 0.907 43 H 0.080 0.920 44 H 0.108 0.892 45 H 0.094 0.906 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.042 1.191 -1.271 2.684 hybrid contribution -0.878 -0.369 -0.031 0.952 sum 1.165 0.823 -1.301 1.930 Atomic orbital electron populations 1.22449 0.75332 1.06013 1.04604 1.44001 1.07433 1.04927 1.52365 1.22271 0.90519 0.92209 1.06865 1.20060 0.93943 0.95334 1.13104 1.24250 0.93231 1.07054 0.90531 1.86462 1.41731 1.91963 1.15813 0.85345 0.79054 0.74725 0.80713 1.18661 1.20094 1.17508 1.22979 0.95898 0.95257 1.02317 1.20137 0.91227 0.87400 1.20246 1.17568 0.84935 0.84957 0.76464 1.90726 1.19818 1.84719 1.51822 1.46642 1.09056 1.06926 1.68208 1.23465 0.79729 1.06308 0.99186 1.22168 0.99823 0.99297 0.95592 1.26632 1.06709 1.09648 1.07296 0.78437 0.63942 0.65545 0.66824 1.26318 1.06854 1.16525 1.07380 1.26692 1.06116 1.05074 1.19613 1.27197 1.22206 1.02576 1.00752 1.21005 0.99679 0.80751 0.99533 0.89743 0.89365 0.87456 0.79734 0.86191 0.76495 0.78424 0.85082 0.86060 0.92540 0.89078 0.90834 0.88755 0.91339 0.90855 0.91854 0.90379 0.89776 0.90735 0.91956 0.89177 0.90592 0.88839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.07 10.83 127.77 1.38 1.45 16 2 N -0.42 -1.69 3.16 -534.33 -1.69 -3.38 16 3 C 0.02 0.01 9.94 83.48 0.83 0.84 16 4 C -0.22 -0.10 5.43 -20.12 -0.11 -0.21 16 5 C -0.04 0.09 3.02 71.23 0.22 0.30 16 6 O -0.55 0.78 12.88 -148.98 -1.92 -1.14 16 7 Si 0.98 -2.43 25.89 68.60 1.78 -0.65 16 8 H -0.26 0.23 7.11 99.48 0.71 0.94 16 9 H -0.28 -0.38 7.11 99.48 0.71 0.33 16 10 H -0.25 0.75 7.11 99.48 0.71 1.46 16 11 C -0.14 -0.24 7.69 22.57 0.17 -0.06 16 12 C -0.08 -0.45 6.64 40.35 0.27 -0.18 16 13 C 0.57 4.81 6.91 86.45 0.60 5.41 16 14 O -0.59 -8.75 13.68 -4.33 -0.06 -8.81 16 15 N -0.58 -1.37 2.18 -834.48 -1.82 -3.19 16 16 C 0.03 -0.10 4.92 86.55 0.43 0.33 16 17 C -0.13 0.37 4.24 30.94 0.13 0.50 16 18 C -0.42 2.09 5.09 72.35 0.37 2.45 16 19 Si 1.06 -6.19 10.05 68.60 0.69 -5.50 16 20 C -0.46 1.49 8.65 113.37 0.98 2.47 16 21 C -0.47 3.02 7.38 113.37 0.84 3.85 16 22 C -0.44 0.30 4.96 72.76 0.36 0.66 16 23 C 0.11 0.21 5.82 87.90 0.51 0.72 16 24 H 0.08 -0.07 8.14 -2.38 -0.02 -0.09 16 25 H 0.09 0.55 5.97 -2.39 -0.01 0.54 16 26 H 0.11 -0.44 8.14 -2.39 -0.02 -0.46 16 27 H 0.19 -0.81 6.21 -2.91 -0.02 -0.83 16 28 H 0.12 -0.43 7.96 -2.39 -0.02 -0.45 16 29 H 0.39 -2.82 8.70 -74.06 -0.64 -3.46 16 30 H 0.20 -0.44 2.46 -2.91 -0.01 -0.44 16 31 H 0.13 -0.89 2.84 -2.39 -0.01 -0.90 16 32 H 0.12 -0.42 4.51 -2.39 -0.01 -0.43 16 33 H 0.06 0.09 7.39 -2.39 -0.02 0.07 16 34 H 0.09 -0.43 6.54 -2.39 -0.02 -0.44 16 35 H 0.07 -0.29 7.97 -2.39 -0.02 -0.30 16 36 H 0.09 -0.70 7.97 -2.39 -0.02 -0.72 16 37 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 38 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 39 H 0.06 -0.13 7.96 -2.38 -0.02 -0.15 16 40 H 0.08 -0.50 4.90 -2.39 -0.01 -0.51 16 41 H 0.08 -0.65 7.96 -2.39 -0.02 -0.67 16 42 H 0.07 -0.45 7.96 -2.39 -0.02 -0.47 16 43 H 0.06 0.18 7.96 -2.39 -0.02 0.16 16 44 H 0.09 -0.17 7.96 -2.39 -0.02 -0.19 16 45 H 0.08 0.55 6.58 -2.38 -0.02 0.53 16 46 H 0.09 -0.23 6.56 -2.39 -0.02 -0.25 16 Total: 0.00 -16.47 339.23 5.07 -11.40 By element: Atomic # 1 Polarization: -8.37 SS G_CDS: 1.11 Total: -7.26 kcal Atomic # 6 Polarization: 11.56 SS G_CDS: 6.97 Total: 18.53 kcal Atomic # 7 Polarization: -3.06 SS G_CDS: -3.51 Total: -6.57 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: -1.98 Total: -9.95 kcal Atomic # 14 Polarization: -8.62 SS G_CDS: 2.47 Total: -6.15 kcal Total: -16.47 5.07 -11.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915400_10803934.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.380 kcal (2) G-P(sol) polarization free energy of solvation -16.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds