Wall clock time and date at job start Thu Mar 4 2021 17:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35448 * 125.56754 * 2 1 4 4 C 1.50701 * 126.06772 * 0.05056 * 3 2 1 5 5 O 1.42896 * 109.47349 * 230.76625 * 4 3 2 6 6 Si 1.86305 * 109.46926 * 110.76400 * 4 3 2 7 7 H 1.48501 * 109.47181 * 186.25617 * 6 4 3 8 8 H 1.48494 * 109.47147 * 306.26021 * 6 4 3 9 9 H 1.48505 * 109.46661 * 66.25570 * 6 4 3 10 10 C 1.39839 * 107.86584 * 179.77632 * 3 2 1 11 11 C 1.50696 * 126.45768 * 180.29861 * 10 3 2 12 12 C 1.37869 * 107.08470 * 0.41750 * 10 3 2 13 13 C 1.46680 * 126.23278 * 179.85175 * 12 10 3 14 14 O 1.21696 * 119.99930 * 101.54540 * 13 12 10 15 15 N 1.34780 * 119.99691 * 281.53985 * 13 12 10 16 16 C 1.45047 * 120.98552 * 354.85173 * 15 13 12 17 17 C 1.52518 * 107.75378 * 285.04098 * 16 15 13 18 18 C 1.46943 * 114.66210 * 268.14689 * 17 16 15 19 19 Si 1.88874 * 108.02720 * 62.65754 * 18 17 16 20 20 C 1.86304 * 109.60512 * 55.38322 * 19 18 17 21 21 C 1.86293 * 109.60779 * 175.71652 * 19 18 17 22 22 C 1.85393 * 108.65269 * 295.63607 * 19 18 17 23 23 C 1.47154 * 120.84870 * 174.87267 * 15 13 12 24 24 N 1.35535 * 125.56129 * 180.02562 * 2 1 3 25 25 H 1.08995 * 109.47394 * 273.67189 * 1 2 3 26 26 H 1.09006 * 109.46747 * 33.67038 * 1 2 3 27 27 H 1.08998 * 109.47377 * 153.66980 * 1 2 3 28 28 H 1.08997 * 109.47134 * 350.77270 * 4 3 2 29 29 H 0.96697 * 113.99992 * 180.02562 * 5 4 3 30 30 H 1.09001 * 109.47321 * 270.16242 * 11 10 3 31 31 H 1.08999 * 109.47223 * 30.16650 * 11 10 3 32 32 H 1.09004 * 109.47079 * 150.16003 * 11 10 3 33 33 H 1.08996 * 109.93508 * 165.42276 * 16 15 13 34 34 H 1.09005 * 109.72510 * 44.53628 * 16 15 13 35 35 H 1.09000 * 108.42135 * 146.85049 * 17 16 15 36 36 H 1.09001 * 108.42342 * 29.43353 * 17 16 15 37 37 H 1.09003 * 109.75100 * 182.29219 * 18 17 16 38 38 H 1.08997 * 109.75334 * 302.97287 * 18 17 16 39 39 H 1.08996 * 109.47088 * 60.00679 * 20 19 18 40 40 H 1.09000 * 109.46602 * 179.97438 * 20 19 18 41 41 H 1.09000 * 109.47229 * 300.00309 * 20 19 18 42 42 H 1.09000 * 109.47297 * 60.00375 * 21 19 18 43 43 H 1.09000 * 109.47058 * 179.97438 * 21 19 18 44 44 H 1.09003 * 109.47259 * 299.99908 * 21 19 18 45 45 H 1.08992 * 108.89049 * 200.88353 * 22 19 18 46 46 H 1.09001 * 108.88893 * 319.36184 * 22 19 18 47 47 H 1.09000 * 108.59462 * 18.88379 * 23 15 13 48 48 H 1.09003 * 108.47813 * 261.09911 * 23 15 13 49 49 H 0.97006 * 125.67781 * 359.93540 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1018 0.0000 4 6 1.8200 2.5320 0.0011 5 8 2.4779 3.2531 -1.0425 6 14 2.2166 3.3167 1.6436 7 1 1.6168 4.6740 1.7015 8 1 1.6594 2.4822 2.7382 9 1 3.6897 3.4194 1.8003 10 6 3.6270 0.6766 0.0052 11 6 4.8486 1.5590 0.0134 12 6 3.6122 -0.7020 -0.0013 13 6 4.7859 -1.5817 -0.0022 14 8 5.1435 -2.1202 1.0289 15 7 5.4684 -1.7935 -1.1449 16 6 4.9987 -1.2531 -2.4063 17 6 3.8115 -2.0962 -2.8603 18 6 4.1595 -3.2242 -3.7354 19 14 5.2709 -4.3993 -2.7602 20 6 4.4167 -4.9033 -1.1831 21 6 5.6337 -5.9118 -3.7855 22 6 6.8533 -3.5214 -2.3573 23 6 6.7116 -2.5808 -1.1465 24 7 2.2952 -1.1026 -0.0005 25 1 -0.3634 0.0658 1.0255 26 1 -0.3633 0.8553 -0.5698 27 1 -0.3634 -0.9210 -0.4558 28 1 0.7427 2.5574 -0.1629 29 1 2.2202 4.1833 -1.1007 30 1 5.1463 1.7769 -1.0123 31 1 4.6204 2.4906 0.5312 32 1 5.6626 1.0477 0.5273 33 1 5.7931 -1.3033 -3.1510 34 1 4.6853 -0.2181 -2.2693 35 1 3.1135 -1.4499 -3.3924 36 1 3.3095 -2.4886 -1.9759 37 1 3.2527 -3.7450 -4.0430 38 1 4.6902 -2.8584 -4.6143 39 1 3.4796 -5.4061 -1.4222 40 1 5.0598 -5.5816 -0.6224 41 1 4.2108 -4.0174 -0.5823 42 1 6.1388 -5.6151 -4.7047 43 1 6.2756 -6.5881 -3.2209 44 1 4.6996 -6.4170 -4.0309 45 1 7.6227 -4.2623 -2.1405 46 1 7.1631 -2.9370 -3.2238 47 1 6.7453 -3.1790 -0.2359 48 1 7.5566 -1.8923 -1.1404 49 1 1.9832 -2.0211 0.0000 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915400_12297754.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 17:37:38 Heat of formation + Delta-G solvation = -61.699737 kcal Electronic energy + Delta-G solvation = -27812.494233 eV Core-core repulsion = 24284.682190 eV Total energy + Delta-G solvation = -3527.812043 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.178 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.69173 -40.72860 -37.88157 -37.55113 -34.24166 -33.99396 -33.03056 -31.58512 -29.23079 -29.16306 -28.45058 -27.51502 -27.10598 -26.30694 -23.66728 -22.68634 -21.32404 -20.11435 -19.94237 -18.59225 -18.22116 -17.91952 -17.00114 -16.63391 -16.06688 -15.58694 -15.30405 -15.12999 -15.04664 -14.84694 -14.60535 -14.34339 -14.12573 -14.06413 -14.00275 -13.89047 -13.75592 -13.53610 -13.49099 -13.27835 -13.24363 -13.19853 -13.13412 -12.85468 -12.53209 -12.41640 -12.34206 -12.22624 -12.20365 -11.82026 -11.53527 -11.19125 -10.83413 -10.63559 -10.48198 -10.23390 -9.76062 -9.40160 -8.85760 0.81997 1.12664 1.19696 1.45198 1.51596 1.72911 1.79709 1.84505 1.89241 1.99251 2.09635 2.45819 2.64004 3.49222 3.66546 3.91014 3.95148 4.07996 4.10177 4.16277 4.27975 4.35092 4.39005 4.45514 4.51323 4.59193 4.65191 4.66023 4.70245 4.76431 4.80125 4.80794 4.81713 4.82952 4.90641 4.97531 5.02718 5.07039 5.13543 5.18576 5.18974 5.28946 5.31592 5.45622 5.47776 5.58462 5.62581 5.83986 5.97154 6.23686 6.48289 6.93135 7.00574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.066 3.934 3 C -0.183 4.183 4 C -0.024 4.024 5 O -0.556 6.556 6 Si 0.952 3.048 7 H -0.248 1.248 8 H -0.278 1.278 9 H -0.269 1.269 10 C -0.102 4.102 11 C -0.087 4.087 12 C -0.058 4.058 13 C 0.597 3.403 14 O -0.574 6.574 15 N -0.588 5.588 16 C 0.096 3.904 17 C -0.121 4.121 18 C -0.398 4.398 19 Si 1.048 2.952 20 C -0.466 4.466 21 C -0.455 4.455 22 C -0.428 4.428 23 C 0.117 3.883 24 N -0.521 5.521 25 H 0.086 0.914 26 H 0.100 0.900 27 H 0.081 0.919 28 H 0.096 0.904 29 H 0.394 0.606 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.043 0.957 33 H 0.113 0.887 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.047 0.953 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.047 0.953 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.069 0.931 45 H 0.099 0.901 46 H 0.099 0.901 47 H 0.065 0.935 48 H 0.069 0.931 49 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.580 1.292 -6.307 7.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.051 4.051 3 C -0.189 4.189 4 C -0.136 4.136 5 O -0.364 6.364 6 Si 0.778 3.222 7 H -0.171 1.171 8 H -0.203 1.203 9 H -0.194 1.194 10 C -0.110 4.110 11 C -0.144 4.144 12 C -0.171 4.171 13 C 0.384 3.616 14 O -0.453 6.453 15 N -0.319 5.319 16 C -0.026 4.026 17 C -0.159 4.159 18 C -0.484 4.484 19 Si 1.240 2.760 20 C -0.570 4.570 21 C -0.563 4.563 22 C -0.513 4.513 23 C -0.005 4.005 24 N -0.117 5.117 25 H 0.104 0.896 26 H 0.119 0.881 27 H 0.100 0.900 28 H 0.114 0.886 29 H 0.243 0.757 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.132 0.868 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.100 0.900 38 H 0.111 0.889 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.066 0.934 42 H 0.097 0.903 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.118 0.882 46 H 0.118 0.882 47 H 0.084 0.916 48 H 0.087 0.913 49 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -2.924 0.650 -5.036 5.860 hybrid contribution -0.193 -0.321 0.359 0.518 sum -3.116 0.330 -4.678 5.630 Atomic orbital electron populations 1.20609 0.85110 1.05151 1.04261 1.20565 0.94717 0.84729 1.05132 1.18555 0.92014 0.93781 1.14560 1.23714 0.99210 0.90779 0.99902 1.86488 1.68895 1.27503 1.53510 0.85813 0.80149 0.79417 0.76860 1.17138 1.20267 1.19390 1.19695 0.95718 0.90464 1.05086 1.20335 0.93242 0.98217 1.02644 1.19618 0.84301 0.93531 1.19691 1.17205 0.82292 0.79079 0.82987 1.90829 1.70250 1.50722 1.33500 1.47882 1.25401 1.51169 1.07477 1.21643 0.98300 0.98058 0.84592 1.20363 0.98028 0.97838 0.99667 1.25128 1.10493 1.06734 1.06009 0.78768 0.65723 0.66393 0.65138 1.26500 1.08164 1.04661 1.17699 1.26171 1.05189 1.15166 1.09766 1.26590 1.18576 1.05577 1.00551 1.21304 0.84721 0.94466 0.99988 1.41659 1.04021 1.09081 1.56937 0.89555 0.88115 0.89965 0.88642 0.75686 0.90205 0.91042 0.93807 0.86843 0.90118 0.91412 0.93481 0.89961 0.88926 0.91414 0.92240 0.93360 0.90329 0.91528 0.91229 0.88197 0.88248 0.91608 0.91268 0.73600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.57 10.04 71.23 0.72 1.29 16 2 C 0.07 0.08 7.13 41.34 0.29 0.37 16 3 C -0.18 -0.74 4.43 -20.12 -0.09 -0.83 16 4 C -0.02 0.02 2.78 71.24 0.20 0.21 16 5 O -0.56 0.50 12.34 -148.98 -1.84 -1.34 16 6 Si 0.95 1.77 26.81 68.60 1.84 3.60 16 7 H -0.25 0.00 7.11 99.48 0.71 0.70 16 8 H -0.28 -1.63 7.11 99.48 0.71 -0.92 16 9 H -0.27 -1.63 5.71 99.48 0.57 -1.06 16 10 C -0.10 -0.75 5.21 -19.57 -0.10 -0.85 16 11 C -0.09 -0.58 9.50 71.23 0.68 0.10 16 12 C -0.06 -0.43 4.85 40.35 0.20 -0.24 16 13 C 0.60 5.78 5.32 86.45 0.46 6.25 16 14 O -0.57 -10.31 16.51 -4.33 -0.07 -10.39 16 15 N -0.59 -1.88 1.85 -827.49 -1.53 -3.40 16 16 C 0.10 -0.14 5.12 86.49 0.44 0.30 16 17 C -0.12 0.30 4.71 28.55 0.13 0.44 16 18 C -0.40 2.09 4.77 70.10 0.33 2.43 16 19 Si 1.05 -4.88 10.48 68.60 0.72 -4.16 16 20 C -0.47 -0.86 8.41 113.37 0.95 0.09 16 21 C -0.46 1.72 8.65 113.37 0.98 2.70 16 22 C -0.43 1.80 4.36 72.31 0.32 2.12 16 23 C 0.12 0.20 5.75 86.58 0.50 0.70 16 24 N -0.52 -1.44 5.67 -171.93 -0.97 -2.41 16 25 H 0.09 -0.60 8.14 -2.39 -0.02 -0.62 16 26 H 0.10 -0.86 7.14 -2.38 -0.02 -0.88 16 27 H 0.08 -0.69 8.14 -2.39 -0.02 -0.71 16 28 H 0.10 -0.58 6.62 -2.39 -0.02 -0.60 16 29 H 0.39 -3.83 8.74 -74.06 -0.65 -4.47 16 30 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.07 0.48 4.98 -2.39 -0.01 0.47 16 32 H 0.04 0.37 7.96 -2.38 -0.02 0.35 16 33 H 0.11 -0.67 6.71 -2.39 -0.02 -0.68 16 34 H 0.08 0.03 6.91 -2.38 -0.02 0.01 16 35 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 36 H 0.05 -0.02 5.50 -2.39 -0.01 -0.03 16 37 H 0.08 -0.45 8.00 -2.39 -0.02 -0.47 16 38 H 0.09 -0.70 8.00 -2.39 -0.02 -0.72 16 39 H 0.07 0.04 7.96 -2.39 -0.02 0.03 16 40 H 0.06 0.20 7.96 -2.39 -0.02 0.19 16 41 H 0.05 0.28 5.74 -2.39 -0.01 0.27 16 42 H 0.08 -0.40 7.96 -2.39 -0.02 -0.42 16 43 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 44 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 45 H 0.10 -0.53 7.93 -2.39 -0.02 -0.55 16 46 H 0.10 -0.75 7.30 -2.39 -0.02 -0.77 16 47 H 0.07 0.42 7.10 -2.39 -0.02 0.40 16 48 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 49 H 0.42 -0.39 8.96 -92.70 -0.83 -1.22 16 Total: 0.00 -19.27 372.71 4.25 -15.02 By element: Atomic # 1 Polarization: -12.09 SS G_CDS: 0.10 Total: -12.00 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: 6.01 Total: 15.08 kcal Atomic # 7 Polarization: -3.31 SS G_CDS: -2.50 Total: -5.82 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: -1.91 Total: -11.73 kcal Atomic # 14 Polarization: -3.11 SS G_CDS: 2.56 Total: -0.56 kcal Total: -19.27 4.25 -15.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915400_12297754.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.683 kcal (2) G-P(sol) polarization free energy of solvation -19.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds