Wall clock time and date at job start Thu Mar 4 2021 17:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86294 * 1 3 3 C 1.86303 * 109.44015 * 2 1 4 4 C 1.88799 * 109.44147 * 119.92423 * 2 1 3 5 5 C 1.49874 * 108.19207 * 50.78233 * 4 2 1 6 6 C 1.54333 * 114.58760 * 84.45359 * 5 4 2 7 7 N 1.47121 * 117.93537 * 314.26075 * 6 5 4 8 8 C 1.34772 * 118.22834 * 134.72079 * 7 6 5 9 9 O 1.21284 * 119.99979 * 179.97438 * 8 7 6 10 10 C 1.50705 * 120.00258 * 359.97438 * 8 7 6 11 11 C 1.50707 * 109.46966 * 179.97438 * 10 8 7 12 12 C 1.38228 * 119.99613 * 269.72037 * 11 10 8 13 13 C 1.38234 * 119.99704 * 179.74649 * 12 11 10 14 14 C 1.38237 * 120.00161 * 0.55407 * 13 12 11 15 15 C 1.50697 * 120.00236 * 179.72092 * 14 13 12 16 16 O 1.42901 * 109.47435 * 244.97773 * 15 14 13 17 17 Si 1.86300 * 109.47113 * 4.98065 * 15 14 13 18 18 H 1.48504 * 109.47338 * 59.99694 * 17 15 14 19 19 H 1.48496 * 109.46948 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47238 * 299.99749 * 17 15 14 21 21 C 1.38234 * 119.99618 * 359.70081 * 14 13 12 22 22 C 1.38229 * 120.00025 * 0.02562 * 21 14 13 23 23 C 1.42774 * 123.53698 * 314.70878 * 7 6 5 24 24 C 1.54950 * 107.21088 * 96.96223 * 23 7 6 25 25 H 1.08996 * 109.47250 * 300.07869 * 1 2 3 26 26 H 1.09005 * 109.46871 * 60.07779 * 1 2 3 27 27 H 1.08999 * 109.47512 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46999 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47108 * 299.92458 * 3 2 1 30 30 H 1.08996 * 109.47097 * 59.92409 * 3 2 1 31 31 H 1.09002 * 109.72754 * 170.47128 * 4 2 1 32 32 H 1.08998 * 109.72375 * 291.09767 * 4 2 1 33 33 H 1.09008 * 108.45437 * 205.85374 * 5 4 2 34 34 H 1.09000 * 108.45658 * 323.19464 * 5 4 2 35 35 H 1.09001 * 107.76556 * 192.10691 * 6 5 4 36 36 H 1.08998 * 107.69398 * 76.36579 * 6 5 4 37 37 H 1.09006 * 109.46383 * 299.99380 * 10 8 7 38 38 H 1.08998 * 109.47285 * 59.99692 * 10 8 7 39 39 H 1.08004 * 120.00493 * 0.02562 * 12 11 10 40 40 H 1.08002 * 120.00057 * 180.27206 * 13 12 11 41 41 H 1.09010 * 109.46847 * 124.97517 * 15 14 13 42 42 H 0.96701 * 113.99967 * 60.00240 * 16 15 14 43 43 H 1.07998 * 119.99849 * 180.02562 * 21 14 13 44 44 H 1.08011 * 119.99898 * 179.97438 * 22 21 14 45 45 H 1.08997 * 109.90809 * 337.53291 * 23 7 6 46 46 H 1.09004 * 109.97040 * 216.42889 * 23 7 6 47 47 H 1.09001 * 109.04513 * 163.35044 * 24 23 7 48 48 H 1.09000 * 109.04663 * 44.46738 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4830 1.7568 0.0000 4 6 2.4913 -0.8881 1.5430 5 6 1.7982 -2.2138 1.6348 6 6 2.4535 -3.3398 0.8074 7 7 2.8527 -3.0359 -0.5756 8 6 4.0678 -3.4434 -0.9925 9 8 4.4294 -3.2104 -2.1265 10 6 4.9772 -4.1886 -0.0498 11 6 6.2642 -4.5280 -0.7566 12 6 6.3831 -5.7239 -1.4395 13 6 7.5618 -6.0329 -2.0922 14 6 8.6256 -5.1511 -2.0524 15 6 9.9127 -5.4907 -2.7587 16 8 10.9573 -5.6473 -1.7962 17 14 9.6996 -7.0796 -3.7079 18 1 8.6141 -6.9169 -4.7082 19 1 10.9678 -7.4139 -4.4044 20 1 9.3469 -8.1740 -2.7683 21 6 8.5085 -3.9575 -1.3650 22 6 7.3279 -3.6460 -0.7171 23 6 2.0222 -2.3328 -1.4999 24 6 2.4633 -0.8476 -1.4748 25 1 -0.3633 0.5150 0.8892 26 1 -0.3633 0.5127 -0.8907 27 1 -0.3634 -1.0276 0.0005 28 1 3.5730 1.7574 0.0005 29 1 2.1205 2.2700 -0.8906 30 1 2.1183 2.2708 0.8893 31 1 3.5680 -1.0404 1.4671 32 1 2.2655 -0.2929 2.4277 33 1 1.7766 -2.5202 2.6807 34 1 0.7702 -2.0900 1.2943 35 1 1.7571 -4.1777 0.7758 36 1 3.3421 -3.6714 1.3446 37 1 5.1922 -3.5639 0.8173 38 1 4.4889 -5.1070 0.2761 39 1 5.5535 -6.4149 -1.4669 40 1 7.6531 -6.9653 -2.6294 41 1 10.1716 -4.6873 -3.4485 42 1 10.7940 -6.3468 -1.1488 43 1 9.3394 -3.2683 -1.3343 44 1 7.2365 -2.7135 -0.1797 45 1 0.9782 -2.4150 -1.1977 46 1 2.1514 -2.7416 -2.5021 47 1 2.0706 -0.3449 -2.3586 48 1 3.5521 -0.7996 -1.4942 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915400_12335836.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 17:41:36 Heat of formation + Delta-G solvation = -76.734450 kcal Electronic energy + Delta-G solvation = -25496.571601 eV Core-core repulsion = 22060.844993 eV Total energy + Delta-G solvation = -3435.726608 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.167 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.49400 -40.33873 -37.80410 -37.34266 -34.37240 -33.83426 -32.00342 -31.85323 -29.57498 -28.88564 -28.36862 -27.03917 -25.95041 -23.98800 -23.86585 -22.35900 -21.84610 -19.69168 -18.49482 -18.31552 -17.38615 -17.01503 -16.84473 -16.29917 -16.20746 -15.80776 -15.39932 -15.07666 -15.06070 -14.84387 -14.55215 -14.36165 -14.22859 -14.10290 -13.93562 -13.47891 -13.46859 -13.29901 -13.19123 -13.09784 -12.96718 -12.91738 -12.78447 -12.53287 -12.25546 -12.21054 -12.11656 -11.99115 -11.64280 -11.55934 -10.86156 -10.75343 -10.57256 -10.41809 -10.15777 -9.89606 -9.62403 -9.59022 0.22793 0.42941 1.15066 1.41211 1.49986 1.61592 1.87591 1.91646 1.97014 2.03222 2.09544 2.73099 2.76409 3.50499 3.62709 3.68903 3.76711 3.89875 3.91384 4.02224 4.17771 4.28807 4.34042 4.39823 4.44420 4.47792 4.55903 4.58840 4.61675 4.69890 4.73310 4.77141 4.77746 4.86758 4.90703 4.96984 4.98667 5.05752 5.06869 5.09938 5.35048 5.36666 5.39192 5.51772 5.52682 5.57271 5.58124 5.68363 5.82350 5.99922 6.36393 6.68985 7.22343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.456 4.456 2 Si 1.073 2.927 3 C -0.470 4.470 4 C -0.401 4.401 5 C -0.121 4.121 6 C 0.089 3.911 7 N -0.596 5.596 8 C 0.505 3.495 9 O -0.577 6.577 10 C -0.101 4.101 11 C -0.070 4.070 12 C -0.112 4.112 13 C -0.136 4.136 14 C -0.128 4.128 15 C -0.080 4.080 16 O -0.551 6.551 17 Si 0.984 3.016 18 H -0.266 1.266 19 H -0.274 1.274 20 H -0.246 1.246 21 C -0.102 4.102 22 C -0.116 4.116 23 C 0.128 3.872 24 C -0.463 4.463 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.077 0.923 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.098 0.902 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.137 0.863 40 H 0.128 0.872 41 H 0.118 0.882 42 H 0.389 0.611 43 H 0.130 0.870 44 H 0.133 0.867 45 H 0.103 0.897 46 H 0.053 0.947 47 H 0.075 0.925 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.523 -1.361 6.783 8.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.563 4.563 2 Si 1.263 2.737 3 C -0.576 4.576 4 C -0.487 4.487 5 C -0.159 4.159 6 C -0.032 4.032 7 N -0.328 5.328 8 C 0.294 3.706 9 O -0.456 6.456 10 C -0.140 4.140 11 C -0.071 4.071 12 C -0.130 4.130 13 C -0.154 4.154 14 C -0.128 4.128 15 C -0.190 4.190 16 O -0.358 6.358 17 Si 0.809 3.191 18 H -0.191 1.191 19 H -0.199 1.199 20 H -0.169 1.169 21 C -0.120 4.120 22 C -0.134 4.134 23 C 0.004 3.996 24 C -0.547 4.547 25 H 0.092 0.908 26 H 0.083 0.917 27 H 0.096 0.904 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.112 0.888 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.116 0.884 37 H 0.147 0.853 38 H 0.148 0.852 39 H 0.155 0.845 40 H 0.146 0.854 41 H 0.136 0.864 42 H 0.238 0.762 43 H 0.148 0.852 44 H 0.151 0.849 45 H 0.121 0.879 46 H 0.071 0.929 47 H 0.094 0.906 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.206 -1.542 5.369 6.993 hybrid contribution -0.027 0.366 -0.160 0.401 sum -4.233 -1.175 5.209 6.814 Atomic orbital electron populations 1.26277 1.20754 1.04804 1.04481 0.77970 0.66267 0.64343 0.65081 1.26388 1.05864 1.21077 1.04256 1.25603 1.04792 1.03350 1.14971 1.21065 1.00072 0.93786 1.00939 1.22190 1.02794 0.98526 0.79697 1.47260 1.15902 1.56321 1.13281 1.21080 0.82314 0.79052 0.88144 1.90730 1.74533 1.58022 1.22330 1.20868 0.91910 1.03242 0.97994 1.19590 0.94880 0.94412 0.98210 1.21170 0.97730 0.97206 0.96912 1.21183 0.94020 0.99660 1.00513 1.20411 0.96292 0.95805 1.00323 1.25005 0.86207 1.11863 0.95929 1.86480 1.42862 1.60902 1.45588 0.85190 0.78971 0.76038 0.78898 1.19104 1.19880 1.16943 1.21116 0.97873 0.96364 0.96641 1.21258 0.93039 0.99332 0.99727 1.20663 0.95236 0.90421 0.93246 1.27015 1.05900 1.03179 1.18593 0.90816 0.91716 0.90443 0.92145 0.92014 0.90825 0.91067 0.89482 0.88791 0.91108 0.90022 0.88360 0.85285 0.85163 0.84542 0.85435 0.86432 0.76202 0.85231 0.84938 0.87893 0.92872 0.90604 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.45 8.35 113.37 0.95 3.39 16 2 Si 1.07 -5.77 10.48 68.60 0.72 -5.05 16 3 C -0.47 0.64 8.65 113.37 0.98 1.62 16 4 C -0.40 2.91 4.83 70.98 0.34 3.25 16 5 C -0.12 1.15 5.32 30.04 0.16 1.31 16 6 C 0.09 -0.76 5.83 86.71 0.51 -0.26 16 7 N -0.60 0.86 2.45 -822.72 -2.01 -1.16 16 8 C 0.50 1.84 7.19 87.66 0.63 2.47 16 9 O -0.58 -8.04 15.25 -3.04 -0.05 -8.09 16 10 C -0.10 0.29 4.11 29.11 0.12 0.41 16 11 C -0.07 -0.21 4.37 -19.87 -0.09 -0.29 16 12 C -0.11 -0.40 9.70 22.27 0.22 -0.18 16 13 C -0.14 -0.57 8.67 22.27 0.19 -0.37 16 14 C -0.13 -0.57 5.35 -19.87 -0.11 -0.68 16 15 C -0.08 -0.18 2.80 71.24 0.20 0.02 16 16 O -0.55 -1.41 12.83 -148.98 -1.91 -3.32 16 17 Si 0.98 1.44 25.14 68.60 1.72 3.16 16 18 H -0.27 -1.05 7.11 99.48 0.71 -0.34 16 19 H -0.27 -1.19 7.11 99.48 0.71 -0.49 16 20 H -0.25 -0.06 7.04 99.48 0.70 0.64 16 21 C -0.10 -0.51 9.69 22.27 0.22 -0.29 16 22 C -0.12 -0.46 9.70 22.27 0.22 -0.24 16 23 C 0.13 0.06 5.36 87.73 0.47 0.53 16 24 C -0.46 -0.29 4.47 72.65 0.32 0.04 16 25 H 0.07 -0.42 7.96 -2.39 -0.02 -0.44 16 26 H 0.06 -0.25 7.96 -2.38 -0.02 -0.27 16 27 H 0.08 -0.53 6.53 -2.39 -0.02 -0.55 16 28 H 0.06 0.00 7.96 -2.39 -0.02 -0.02 16 29 H 0.06 -0.01 7.96 -2.39 -0.02 -0.03 16 30 H 0.07 -0.18 7.96 -2.39 -0.02 -0.19 16 31 H 0.07 -0.43 7.90 -2.39 -0.02 -0.44 16 32 H 0.09 -0.72 7.99 -2.39 -0.02 -0.74 16 33 H 0.09 -1.11 8.14 -2.38 -0.02 -1.13 16 34 H 0.07 -0.74 5.94 -2.39 -0.01 -0.75 16 35 H 0.08 -0.89 8.14 -2.39 -0.02 -0.91 16 36 H 0.10 -1.16 5.49 -2.39 -0.01 -1.17 16 37 H 0.13 -1.02 7.38 -2.38 -0.02 -1.03 16 38 H 0.13 -1.08 7.87 -2.39 -0.02 -1.10 16 39 H 0.14 -0.04 8.06 -2.91 -0.02 -0.07 16 40 H 0.13 0.18 4.87 -2.91 -0.01 0.17 16 41 H 0.12 0.18 7.96 -2.38 -0.02 0.16 16 42 H 0.39 -1.65 8.70 -74.06 -0.64 -2.29 16 43 H 0.13 0.44 8.06 -2.91 -0.02 0.42 16 44 H 0.13 0.09 8.06 -2.90 -0.02 0.07 16 45 H 0.10 -0.51 7.14 -2.39 -0.02 -0.53 16 46 H 0.05 0.32 7.46 -2.39 -0.02 0.31 16 47 H 0.08 0.09 7.89 -2.39 -0.02 0.08 16 48 H 0.06 0.33 7.28 -2.39 -0.02 0.31 16 Total: 0.00 -18.92 372.49 4.84 -14.07 By element: Atomic # 1 Polarization: -11.39 SS G_CDS: 1.04 Total: -10.34 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: 5.33 Total: 10.72 kcal Atomic # 7 Polarization: 0.86 SS G_CDS: -2.01 Total: -1.16 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: -1.96 Total: -11.41 kcal Atomic # 14 Polarization: -4.33 SS G_CDS: 2.44 Total: -1.89 kcal Total: -18.92 4.84 -14.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915400_12335836.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.662 kcal (2) G-P(sol) polarization free energy of solvation -18.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds