Wall clock time and date at job start Thu Mar 4 2021 17:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86299 * 109.00862 * 2 1 4 4 C 1.86974 * 109.02105 * 118.90949 * 2 1 3 5 5 C 1.54093 * 109.19985 * 80.36260 * 4 2 1 6 6 C 1.52373 * 108.11800 * 321.40308 * 5 4 2 7 7 N 1.45473 * 105.78535 * 102.41408 * 6 5 4 8 8 C 1.34775 * 116.96743 * 80.98344 * 7 6 5 9 9 O 1.21592 * 120.00095 * 194.42559 * 8 7 6 10 10 C 1.47583 * 119.99914 * 14.42445 * 8 7 6 11 11 C 1.40199 * 119.83283 * 330.20837 * 10 8 7 12 12 C 1.36228 * 120.37982 * 179.75319 * 11 10 8 13 13 C 1.39877 * 119.96012 * 0.52740 * 12 11 10 14 14 C 1.46260 * 133.84606 * 179.73795 * 13 12 11 15 15 C 1.50699 * 126.47998 * 359.97367 * 14 13 12 16 16 O 1.42894 * 109.46849 * 284.99891 * 15 14 13 17 17 Si 1.86298 * 109.46941 * 165.00076 * 15 14 13 18 18 H 1.48509 * 109.47153 * 59.99760 * 17 15 14 19 19 H 1.48502 * 109.47133 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47266 * 300.00129 * 17 15 14 21 21 C 1.34451 * 107.03217 * 179.97438 * 14 13 12 22 22 N 1.36560 * 109.98991 * 359.97438 * 21 14 13 23 23 C 1.37827 * 109.85882 * 359.97438 * 22 21 14 24 24 C 1.38650 * 133.37581 * 179.97438 * 23 22 21 25 25 C 1.42434 * 126.06789 * 261.00235 * 7 6 5 26 26 C 1.55256 * 107.53715 * 64.18681 * 25 7 6 27 27 H 1.08996 * 109.47470 * 280.64935 * 1 2 3 28 28 H 1.09003 * 109.47189 * 40.65520 * 1 2 3 29 29 H 1.09001 * 109.46939 * 160.64708 * 1 2 3 30 30 H 1.08999 * 109.47069 * 178.90386 * 3 2 1 31 31 H 1.09001 * 109.47414 * 298.90861 * 3 2 1 32 32 H 1.09002 * 109.46576 * 58.90773 * 3 2 1 33 33 H 1.09003 * 109.51424 * 320.45082 * 4 2 1 34 34 H 1.08994 * 109.56352 * 200.31353 * 4 2 1 35 35 H 1.08996 * 109.73598 * 201.74051 * 5 4 2 36 36 H 1.09005 * 109.76909 * 81.08098 * 5 4 2 37 37 H 1.09005 * 110.17708 * 343.34968 * 6 5 4 38 38 H 1.08999 * 110.28870 * 221.54163 * 6 5 4 39 39 H 1.08007 * 119.81009 * 0.02684 * 11 10 8 40 40 H 1.07999 * 120.02106 * 180.23818 * 12 11 10 41 41 H 1.08994 * 109.47062 * 45.00057 * 15 14 13 42 42 H 0.96701 * 114.00238 * 300.00199 * 16 15 14 43 43 H 1.08008 * 125.00218 * 179.97438 * 21 14 13 44 44 H 0.97000 * 125.06945 * 180.02562 * 22 21 14 45 45 H 1.07996 * 120.16844 * 359.97438 * 24 23 22 46 46 H 1.08998 * 109.85380 * 183.71310 * 25 7 6 47 47 H 1.09000 * 109.85543 * 304.66016 * 25 7 6 48 48 H 1.08997 * 109.50961 * 57.39812 * 26 25 7 49 49 H 1.09000 * 109.51053 * 177.55112 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4698 1.7614 0.0000 4 6 2.4724 -0.8545 1.5474 5 6 2.4072 -2.3804 1.3427 6 6 1.1379 -2.7001 0.5628 7 7 1.5658 -2.9480 -0.8053 8 6 2.0600 -4.1717 -1.0789 9 8 2.6704 -4.3636 -2.1128 10 6 1.8602 -5.2787 -0.1235 11 6 1.7528 -5.0059 1.2475 12 6 1.5633 -6.0187 2.1387 13 6 1.4859 -7.3405 1.6878 14 6 1.2989 -8.6290 2.3542 15 6 1.1289 -8.8559 3.8343 16 8 2.3909 -8.7045 4.4873 17 14 0.4802 -10.5774 4.1281 18 1 1.4420 -11.5687 3.5824 19 1 0.3133 -10.8012 5.5866 20 1 -0.8313 -10.7347 3.4494 21 6 1.3072 -9.5726 1.3964 22 7 1.4837 -8.9937 0.1723 23 6 1.5959 -7.6271 0.3124 24 6 1.7827 -6.5897 -0.5883 25 6 1.5116 -2.0177 -1.8825 26 6 2.4664 -0.8437 -1.5354 27 1 -0.3634 0.1899 1.0099 28 1 -0.3634 0.7796 -0.6695 29 1 -0.3633 -0.9696 -0.3406 30 1 3.5596 1.7703 0.0197 31 1 2.1185 2.2668 -0.8996 32 1 2.0863 2.2777 0.8801 33 1 1.8421 -0.5731 2.3910 34 1 3.5019 -0.5575 1.7470 35 1 2.3804 -2.8808 2.3106 36 1 3.2789 -2.7145 0.7799 37 1 0.4533 -1.8524 0.5949 38 1 0.6558 -3.5876 0.9727 39 1 1.8163 -3.9865 1.5987 40 1 1.4775 -5.8016 3.1931 41 1 0.4231 -8.1283 4.2347 42 1 3.0693 -9.3214 4.1800 43 1 1.1915 -10.6323 1.5698 44 1 1.5233 -9.4727 -0.6703 45 1 1.8704 -6.7972 -1.6445 46 1 1.8372 -2.4995 -2.8044 47 1 0.4939 -1.6451 -1.9990 48 1 3.4716 -1.2298 -1.3665 49 1 2.4828 -0.1317 -2.3605 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915400_12335838.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 17:41:48 Heat of formation + Delta-G solvation = 27.330429 kcal Electronic energy + Delta-G solvation = -29115.228494 eV Core-core repulsion = 25362.136286 eV Total energy + Delta-G solvation = -3753.092208 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 346.163 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.66908 -41.73144 -38.29142 -37.92518 -37.45079 -34.34993 -33.24703 -31.97651 -30.73272 -30.01315 -29.15739 -28.68299 -27.00919 -26.41503 -25.20023 -23.74474 -22.87463 -22.68293 -20.84653 -20.28520 -19.25729 -18.67976 -17.74203 -17.39474 -16.92130 -16.51499 -16.11582 -16.08972 -15.72569 -15.27885 -15.15032 -15.00306 -14.92335 -14.74693 -14.56455 -14.44299 -14.37531 -13.94311 -13.74800 -13.65806 -13.53406 -13.16838 -13.02152 -12.80586 -12.66832 -12.52916 -12.47017 -12.38360 -12.04537 -12.03291 -11.87070 -11.72275 -11.50357 -10.91284 -10.75300 -10.73136 -10.45215 -10.39068 -10.24133 -9.61700 -9.28752 -8.74679 -0.26893 0.41471 1.28380 1.36625 1.53145 1.61980 1.75896 1.87645 1.90704 1.98321 2.00164 2.02475 2.23077 2.69896 2.81586 3.38133 3.65988 3.71597 3.81587 3.88022 3.96769 4.02261 4.17376 4.19537 4.31157 4.35716 4.40434 4.51479 4.56074 4.63624 4.64919 4.71494 4.75509 4.81950 4.83152 4.83883 4.86251 4.92500 4.94471 5.00839 5.03105 5.25143 5.29294 5.39584 5.45378 5.49885 5.54770 5.61093 5.65587 5.68309 5.74247 6.02226 6.21514 6.51526 6.84916 7.05916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.468 4.468 2 Si 1.063 2.937 3 C -0.465 4.465 4 C -0.415 4.415 5 C -0.141 4.141 6 C 0.030 3.970 7 N -0.588 5.588 8 C 0.548 3.452 9 O -0.582 6.582 10 C -0.133 4.133 11 C -0.167 4.167 12 C -0.081 4.081 13 C -0.081 4.081 14 C -0.225 4.225 15 C -0.045 4.045 16 O -0.557 6.557 17 Si 0.988 3.012 18 H -0.243 1.243 19 H -0.277 1.277 20 H -0.259 1.259 21 C 0.075 3.925 22 N -0.580 5.580 23 C 0.067 3.933 24 C -0.077 4.077 25 C 0.113 3.887 26 C -0.446 4.446 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.075 0.925 35 H 0.102 0.898 36 H 0.058 0.942 37 H 0.134 0.866 38 H 0.126 0.874 39 H 0.203 0.797 40 H 0.146 0.854 41 H 0.115 0.885 42 H 0.386 0.614 43 H 0.201 0.799 44 H 0.432 0.568 45 H 0.121 0.879 46 H 0.071 0.929 47 H 0.095 0.905 48 H 0.060 0.940 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.785 -0.543 3.884 5.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.575 4.575 2 Si 1.254 2.746 3 C -0.571 4.571 4 C -0.500 4.500 5 C -0.179 4.179 6 C -0.090 4.090 7 N -0.318 5.318 8 C 0.339 3.661 9 O -0.463 6.463 10 C -0.137 4.137 11 C -0.184 4.184 12 C -0.099 4.099 13 C -0.086 4.086 14 C -0.233 4.233 15 C -0.156 4.156 16 O -0.364 6.364 17 Si 0.811 3.189 18 H -0.166 1.166 19 H -0.202 1.202 20 H -0.183 1.183 21 C -0.054 4.054 22 N -0.184 5.184 23 C -0.040 4.040 24 C -0.099 4.099 25 C -0.010 4.010 26 C -0.530 4.530 27 H 0.104 0.896 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.117 0.883 34 H 0.094 0.906 35 H 0.120 0.880 36 H 0.077 0.923 37 H 0.151 0.849 38 H 0.143 0.857 39 H 0.219 0.781 40 H 0.164 0.836 41 H 0.133 0.867 42 H 0.235 0.765 43 H 0.218 0.782 44 H 0.272 0.728 45 H 0.139 0.861 46 H 0.089 0.911 47 H 0.113 0.887 48 H 0.079 0.921 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.091 -1.042 3.637 5.572 hybrid contribution 0.862 -0.277 -1.433 1.695 sum -3.228 -1.320 2.204 4.126 Atomic orbital electron populations 1.26684 1.20240 1.04771 1.05777 0.78419 0.66679 0.64715 0.64835 1.26321 1.05952 1.20251 1.04578 1.26604 1.07251 0.99858 1.16306 1.22099 0.97060 0.97418 1.01326 1.23442 0.98659 1.07188 0.79694 1.46781 1.61928 1.11812 1.11328 1.18777 0.78012 0.84001 0.85314 1.90744 1.41722 1.84266 1.29591 1.19498 1.07405 0.92165 0.94617 1.23024 1.00277 1.04054 0.91068 1.20552 0.98763 0.89893 1.00719 1.19576 1.02843 0.94517 0.91629 1.20904 1.14805 0.91235 0.96329 1.24392 0.90116 1.13588 0.87486 1.86479 1.22076 1.63630 1.64215 0.85201 0.79943 0.74104 0.79649 1.16609 1.20206 1.18328 1.22245 1.00383 0.99548 0.83215 1.41772 1.62548 1.04337 1.09696 1.18122 1.06115 0.84673 0.95075 1.20046 1.01063 0.90111 0.98671 1.20994 1.00627 0.89642 0.89736 1.27244 1.03568 1.04041 1.18133 0.89613 0.90764 0.90322 0.91889 0.91436 0.90763 0.88318 0.90644 0.88035 0.92330 0.84865 0.85712 0.78145 0.83594 0.86686 0.76550 0.78224 0.72843 0.86073 0.91100 0.88732 0.92087 0.89365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 3.24 7.40 113.37 0.84 4.08 16 2 Si 1.06 -6.41 10.04 68.60 0.69 -5.72 16 3 C -0.46 1.53 8.65 113.37 0.98 2.51 16 4 C -0.41 2.44 5.08 72.35 0.37 2.81 16 5 C -0.14 0.53 4.28 30.76 0.13 0.66 16 6 C 0.03 -0.11 4.93 86.36 0.43 0.32 16 7 N -0.59 -1.72 2.19 -838.34 -1.84 -3.56 16 8 C 0.55 5.38 6.70 86.71 0.58 5.96 16 9 O -0.58 -10.49 15.79 -4.00 -0.06 -10.56 16 10 C -0.13 -0.94 5.62 -20.08 -0.11 -1.05 16 11 C -0.17 -0.33 7.11 22.28 0.16 -0.17 16 12 C -0.08 -0.18 10.03 22.20 0.22 0.04 16 13 C -0.08 -0.35 6.35 -20.14 -0.13 -0.47 16 14 C -0.23 -0.08 5.57 -18.64 -0.10 -0.18 16 15 C -0.05 0.09 3.06 71.24 0.22 0.31 16 16 O -0.56 -0.01 12.88 -148.98 -1.92 -1.93 16 17 Si 0.99 -4.03 26.08 68.60 1.79 -2.24 16 18 H -0.24 1.45 7.03 99.48 0.70 2.14 16 19 H -0.28 -0.09 7.11 99.48 0.71 0.62 16 20 H -0.26 0.70 7.11 99.48 0.71 1.41 16 21 C 0.07 -0.22 10.43 83.09 0.87 0.65 16 22 N -0.58 0.62 6.07 -187.71 -1.14 -0.52 16 23 C 0.07 0.32 7.26 38.96 0.28 0.60 16 24 C -0.08 -0.58 9.61 22.63 0.22 -0.36 16 25 C 0.11 0.30 5.78 87.90 0.51 0.80 16 26 C -0.45 0.00 4.96 72.76 0.36 0.36 16 27 H 0.08 -0.74 7.96 -2.39 -0.02 -0.76 16 28 H 0.07 -0.47 7.96 -2.39 -0.02 -0.48 16 29 H 0.08 -0.54 4.92 -2.39 -0.01 -0.56 16 30 H 0.06 -0.13 7.96 -2.39 -0.02 -0.14 16 31 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 32 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 33 H 0.10 -0.89 7.97 -2.39 -0.02 -0.91 16 34 H 0.07 -0.35 7.97 -2.39 -0.02 -0.37 16 35 H 0.10 -0.71 6.76 -2.39 -0.02 -0.72 16 36 H 0.06 0.06 7.39 -2.38 -0.02 0.05 16 37 H 0.13 -1.02 2.83 -2.38 -0.01 -1.03 16 38 H 0.13 -0.56 4.48 -2.42 -0.01 -0.57 16 39 H 0.20 -0.63 1.27 -16.66 -0.02 -0.65 16 40 H 0.15 -0.22 8.06 -2.91 -0.02 -0.24 16 41 H 0.12 -0.32 7.96 -2.39 -0.02 -0.34 16 42 H 0.39 -2.40 8.70 -74.06 -0.64 -3.04 16 43 H 0.20 -1.91 6.29 -2.91 -0.02 -1.93 16 44 H 0.43 -2.75 8.96 -92.71 -0.83 -3.58 16 45 H 0.12 0.97 7.90 -2.91 -0.02 0.95 16 46 H 0.07 0.60 6.69 -2.39 -0.02 0.58 16 47 H 0.09 -0.21 6.58 -2.39 -0.02 -0.22 16 48 H 0.06 0.24 7.95 -2.39 -0.02 0.22 16 49 H 0.09 -0.10 7.96 -2.39 -0.02 -0.12 16 Total: 0.00 -21.47 367.56 3.60 -17.87 By element: Atomic # 1 Polarization: -10.48 SS G_CDS: 0.27 Total: -10.21 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: 5.82 Total: 16.86 kcal Atomic # 7 Polarization: -1.10 SS G_CDS: -2.98 Total: -4.08 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: -1.98 Total: -12.49 kcal Atomic # 14 Polarization: -10.44 SS G_CDS: 2.48 Total: -7.96 kcal Total: -21.47 3.60 -17.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915400_12335838.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.200 kcal (2) G-P(sol) polarization free energy of solvation -21.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds