Wall clock time and date at job start Thu Mar 4 2021 18:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86304 * 109.00637 * 2 1 4 4 C 1.86976 * 109.02111 * 241.16800 * 2 1 3 5 5 C 1.54090 * 109.19539 * 199.18406 * 4 2 1 6 6 C 1.52932 * 108.12889 * 321.33406 * 5 4 2 7 7 N 1.45480 * 105.50853 * 102.39827 * 6 5 4 8 8 C 1.34771 * 116.96616 * 81.13743 * 7 6 5 9 9 O 1.21549 * 120.00404 * 197.30061 * 8 7 6 10 10 C 1.47852 * 119.99994 * 17.30441 * 8 7 6 11 11 C 1.39556 * 120.14435 * 150.19242 * 10 8 7 12 12 C 1.37978 * 119.87434 * 180.27439 * 11 10 8 13 13 C 1.50700 * 119.91901 * 179.73134 * 12 11 10 14 14 O 1.42900 * 109.47362 * 299.72251 * 13 12 11 15 15 Si 1.86309 * 109.47093 * 179.72657 * 13 12 11 16 16 H 1.48500 * 109.47128 * 59.99604 * 15 13 12 17 17 H 1.48502 * 109.47203 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46834 * 299.99605 * 15 13 12 19 19 C 1.38315 * 120.15621 * 359.45467 * 12 11 10 20 20 C 1.38463 * 120.28576 * 0.29867 * 19 12 11 21 21 Br 1.89098 * 119.93877 * 180.02562 * 20 19 12 22 22 C 1.38028 * 120.12378 * 359.97372 * 20 19 12 23 23 C 1.42427 * 126.06508 * 260.85764 * 7 6 5 24 24 C 1.55260 * 107.47577 * 64.51746 * 23 7 6 25 25 H 1.09005 * 109.47342 * 301.09951 * 1 2 3 26 26 H 1.09006 * 109.47341 * 61.09475 * 1 2 3 27 27 H 1.08991 * 109.47224 * 181.09485 * 1 2 3 28 28 H 1.09003 * 109.47053 * 159.63861 * 3 2 1 29 29 H 1.09005 * 109.47307 * 279.63342 * 3 2 1 30 30 H 1.08997 * 109.47717 * 39.63578 * 3 2 1 31 31 H 1.08998 * 109.51721 * 319.10092 * 4 2 1 32 32 H 1.08999 * 109.51500 * 79.21043 * 4 2 1 33 33 H 1.08993 * 109.73502 * 81.05263 * 5 4 2 34 34 H 1.08997 * 109.73335 * 201.69905 * 5 4 2 35 35 H 1.09005 * 110.17700 * 343.49463 * 6 5 4 36 36 H 1.09000 * 110.45402 * 221.44774 * 6 5 4 37 37 H 1.08000 * 120.05641 * 359.97438 * 11 10 8 38 38 H 1.08999 * 109.47708 * 59.72503 * 13 12 11 39 39 H 0.96703 * 114.00696 * 180.02562 * 14 13 12 40 40 H 1.08005 * 119.85603 * 180.27645 * 19 12 11 41 41 H 1.07997 * 120.08464 * 179.97438 * 22 20 19 42 42 H 1.09000 * 109.85792 * 184.00696 * 23 7 6 43 43 H 1.08994 * 109.85907 * 304.95457 * 23 7 6 44 44 H 1.08995 * 109.51103 * 57.36600 * 24 23 7 45 45 H 1.09001 * 109.51125 * 177.52167 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4697 1.7615 0.0000 4 6 2.4724 -0.8524 -1.5485 5 6 3.9369 -1.2863 -1.3451 6 6 4.6551 -0.1855 -0.5633 7 7 4.7482 -0.6762 0.8030 8 6 5.7455 -1.5409 1.0752 9 8 5.7014 -2.2227 2.0805 10 6 6.8934 -1.6601 0.1510 11 6 8.1520 -2.0147 0.6387 12 6 9.2205 -2.1188 -0.2279 13 6 10.5814 -2.4956 0.2986 14 8 11.0094 -1.5219 1.2528 15 14 11.7971 -2.5592 -1.1117 16 1 11.8699 -1.2266 -1.7630 17 1 13.1380 -2.9312 -0.5930 18 1 11.3524 -3.5712 -2.1033 19 6 9.0445 -1.8837 -1.5795 20 6 7.7975 -1.5366 -2.0713 21 35 7.5678 -1.2181 -3.9210 22 6 6.7217 -1.4236 -1.2140 23 6 3.8869 -0.3236 1.8811 24 6 2.4670 -0.8469 1.5339 25 1 -0.3634 0.5308 0.8800 26 1 -0.3634 0.4968 -0.8997 27 1 -0.3633 -1.0274 0.0196 28 1 3.4990 1.7912 0.3576 29 1 2.4255 2.1611 -1.0132 30 1 1.8399 2.3628 0.6555 31 1 1.8569 -1.7298 -1.7475 32 1 2.4092 -0.1646 -2.3917 33 1 3.9696 -2.2194 -0.7828 34 1 4.4180 -1.4232 -2.3135 35 1 4.0745 0.7366 -0.5929 36 1 5.6518 -0.0171 -0.9711 37 1 8.2902 -2.2024 1.6932 38 1 10.5280 -3.4738 0.7766 39 1 11.8800 -1.7007 1.6340 40 1 9.8833 -1.9709 -2.2542 41 1 5.7495 -1.1524 -1.5982 42 1 4.2376 -0.7885 2.8025 43 1 3.8649 0.7598 1.9983 44 1 2.5070 -1.9228 1.3640 45 1 1.7881 -0.6327 2.3593 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915400_12335870.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 18:04:57 Heat of formation + Delta-G solvation = -0.695711 kcal Electronic energy + Delta-G solvation = -26435.939918 eV Core-core repulsion = 22819.230213 eV Total energy + Delta-G solvation = -3616.709705 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 385.062 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.44214 -40.21452 -38.30166 -37.65094 -34.72523 -33.67827 -33.23862 -31.09590 -30.51415 -29.19340 -28.72812 -27.67495 -26.45334 -25.65889 -23.16778 -22.97392 -22.49076 -20.53480 -18.56416 -18.52478 -18.28010 -17.67721 -16.93883 -16.44112 -16.20357 -15.66909 -15.54009 -15.10235 -15.05520 -14.80884 -14.65166 -14.57643 -14.30607 -14.25347 -13.78101 -13.59368 -13.56127 -13.21520 -13.06821 -12.93511 -12.83592 -12.75874 -12.56305 -12.29612 -12.10129 -11.98341 -11.95068 -11.83526 -11.75931 -11.49117 -11.05998 -10.76145 -10.52695 -10.46146 -10.41248 -10.14559 -9.90624 -9.62081 -0.49391 -0.18027 0.38032 1.07372 1.38688 1.42333 1.47681 1.81806 1.86428 1.89176 1.94577 1.98642 2.32175 2.67303 3.10909 3.21815 3.60044 3.66392 3.76651 3.87220 3.90953 4.00258 4.10104 4.19952 4.27458 4.33367 4.35747 4.49586 4.54176 4.63058 4.66657 4.74771 4.78961 4.82337 4.83379 4.86519 4.91683 4.92828 4.97544 5.06412 5.21833 5.36092 5.38646 5.47245 5.60049 5.62672 5.68512 6.08646 6.75878 6.92336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.464 4.464 2 Si 1.062 2.938 3 C -0.470 4.470 4 C -0.415 4.415 5 C -0.143 4.143 6 C 0.023 3.977 7 N -0.588 5.588 8 C 0.550 3.450 9 O -0.566 6.566 10 C -0.137 4.137 11 C -0.030 4.030 12 C -0.080 4.080 13 C -0.084 4.084 14 O -0.561 6.561 15 Si 0.966 3.034 16 H -0.262 1.262 17 H -0.247 1.247 18 H -0.252 1.252 19 C -0.080 4.080 20 C -0.101 4.101 21 Br -0.027 7.027 22 C -0.102 4.102 23 C 0.113 3.887 24 C -0.444 4.444 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.063 0.937 34 H 0.092 0.908 35 H 0.139 0.861 36 H 0.120 0.880 37 H 0.135 0.865 38 H 0.100 0.900 39 H 0.402 0.598 40 H 0.143 0.857 41 H 0.207 0.793 42 H 0.075 0.925 43 H 0.096 0.904 44 H 0.063 0.937 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.014 2.401 -3.152 3.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.253 2.747 3 C -0.577 4.577 4 C -0.500 4.500 5 C -0.181 4.181 6 C -0.097 4.097 7 N -0.319 5.319 8 C 0.339 3.661 9 O -0.446 6.446 10 C -0.141 4.141 11 C -0.049 4.049 12 C -0.081 4.081 13 C -0.194 4.194 14 O -0.370 6.370 15 Si 0.788 3.212 16 H -0.186 1.186 17 H -0.170 1.170 18 H -0.175 1.175 19 C -0.100 4.100 20 C -0.180 4.180 21 Br 0.058 6.942 22 C -0.121 4.121 23 C -0.009 4.009 24 C -0.528 4.528 25 H 0.087 0.913 26 H 0.092 0.908 27 H 0.082 0.918 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.115 0.885 33 H 0.082 0.918 34 H 0.110 0.890 35 H 0.156 0.844 36 H 0.137 0.863 37 H 0.153 0.847 38 H 0.118 0.882 39 H 0.253 0.747 40 H 0.160 0.840 41 H 0.223 0.777 42 H 0.093 0.907 43 H 0.114 0.886 44 H 0.082 0.918 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.159 2.402 -4.124 4.775 hybrid contribution 0.266 -0.605 1.248 1.412 sum 0.108 1.797 -2.876 3.393 Atomic orbital electron populations 1.26310 1.21946 1.04171 1.04622 0.78434 0.65320 0.66143 0.64825 1.26702 1.06084 1.19099 1.05773 1.26595 0.98460 1.08410 1.16519 1.22192 0.96930 0.97986 1.00955 1.23626 1.05376 1.00688 0.80019 1.46792 1.29264 1.44489 1.11314 1.18627 0.82713 0.79910 0.84808 1.90770 1.79482 1.43972 1.30348 1.19960 0.94477 1.05671 0.93971 1.21217 0.90461 0.92521 1.00725 1.19422 0.95304 1.00961 0.92430 1.24793 0.97432 0.95230 1.01903 1.86446 1.41622 1.49360 1.59602 0.85460 0.78040 0.80681 0.77003 1.18587 1.17020 1.17545 1.21352 0.96886 0.96370 0.95359 1.21762 0.96244 1.07728 0.92276 1.96815 1.97679 1.94922 1.04736 1.23392 1.02122 0.94870 0.91714 1.21049 0.89304 1.01136 0.89452 1.27207 1.00152 1.07525 1.17952 0.91328 0.90839 0.91813 0.90354 0.89711 0.90604 0.90388 0.88451 0.91838 0.89007 0.84375 0.86261 0.84717 0.88181 0.74738 0.84003 0.77684 0.90705 0.88563 0.91796 0.89128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.85 8.65 113.37 0.98 2.83 16 2 Si 1.06 -7.19 10.05 68.60 0.69 -6.50 16 3 C -0.47 3.47 7.38 113.37 0.84 4.30 16 4 C -0.41 2.60 5.09 72.35 0.37 2.97 16 5 C -0.14 0.57 4.48 30.94 0.14 0.71 16 6 C 0.02 -0.09 4.94 86.55 0.43 0.34 16 7 N -0.59 -0.97 2.18 -835.90 -1.82 -2.79 16 8 C 0.55 4.36 6.65 86.79 0.58 4.94 16 9 O -0.57 -8.83 15.88 -3.87 -0.06 -8.89 16 10 C -0.14 -0.74 5.66 -20.09 -0.11 -0.85 16 11 C -0.03 -0.18 9.16 22.53 0.21 0.03 16 12 C -0.08 -0.26 5.42 -19.91 -0.11 -0.37 16 13 C -0.08 0.10 2.81 71.24 0.20 0.30 16 14 O -0.56 0.18 12.74 -148.98 -1.90 -1.72 16 15 Si 0.97 -2.07 25.06 68.60 1.72 -0.35 16 16 H -0.26 -0.23 7.11 99.48 0.71 0.48 16 17 H -0.25 0.67 7.11 99.48 0.71 1.38 16 18 H -0.25 0.31 7.11 99.48 0.71 1.02 16 19 C -0.08 -0.19 8.41 22.34 0.19 -0.01 16 20 C -0.10 -0.18 6.22 22.27 0.14 -0.04 16 21 Br -0.03 0.00 33.69 -20.37 -0.69 -0.69 16 22 C -0.10 -0.14 7.03 22.55 0.16 0.02 16 23 C 0.11 0.12 5.76 87.90 0.51 0.63 16 24 C -0.44 0.62 4.96 72.76 0.36 0.98 16 25 H 0.07 -0.25 7.96 -2.38 -0.02 -0.27 16 26 H 0.07 -0.33 7.96 -2.38 -0.02 -0.35 16 27 H 0.06 -0.18 7.96 -2.39 -0.02 -0.20 16 28 H 0.08 -0.58 4.90 -2.39 -0.01 -0.60 16 29 H 0.08 -0.75 7.96 -2.38 -0.02 -0.77 16 30 H 0.07 -0.52 7.96 -2.39 -0.02 -0.54 16 31 H 0.08 -0.42 7.97 -2.39 -0.02 -0.44 16 32 H 0.10 -0.87 7.97 -2.39 -0.02 -0.89 16 33 H 0.06 -0.01 7.39 -2.39 -0.02 -0.03 16 34 H 0.09 -0.56 6.88 -2.39 -0.02 -0.58 16 35 H 0.14 -1.09 2.84 -2.38 -0.01 -1.10 16 36 H 0.12 -0.52 4.21 -4.01 -0.02 -0.54 16 37 H 0.13 0.98 7.92 -2.91 -0.02 0.95 16 38 H 0.10 -0.48 7.96 -2.39 -0.02 -0.50 16 39 H 0.40 -3.81 8.74 -74.06 -0.65 -4.46 16 40 H 0.14 0.02 4.86 -2.91 -0.01 0.01 16 41 H 0.21 -0.57 1.61 -3.95 -0.01 -0.58 16 42 H 0.07 0.48 6.74 -2.39 -0.02 0.46 16 43 H 0.10 -0.34 6.56 -2.39 -0.02 -0.36 16 44 H 0.06 0.14 7.96 -2.39 -0.02 0.13 16 45 H 0.09 -0.23 7.96 -2.39 -0.02 -0.25 16 Total: 0.00 -16.09 355.84 3.95 -12.15 By element: Atomic # 1 Polarization: -9.14 SS G_CDS: 1.14 Total: -8.00 kcal Atomic # 6 Polarization: 11.92 SS G_CDS: 4.87 Total: 16.78 kcal Atomic # 7 Polarization: -0.97 SS G_CDS: -1.82 Total: -2.79 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: -1.96 Total: -10.61 kcal Atomic # 14 Polarization: -9.26 SS G_CDS: 2.41 Total: -6.85 kcal Atomic # 35 Polarization: 0.00 SS G_CDS: -0.69 Total: -0.69 kcal Total: -16.09 3.95 -12.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915400_12335870.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.450 kcal (2) G-P(sol) polarization free energy of solvation -16.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds