Wall clock time and date at job start Thu Mar 4 2021 18:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86303 * 109.44264 * 2 1 4 4 C 1.88793 * 109.44149 * 119.92699 * 2 1 3 5 5 C 1.49869 * 108.19532 * 50.78122 * 4 2 1 6 6 C 1.54331 * 114.59189 * 84.44874 * 5 4 2 7 7 N 1.47115 * 117.93458 * 314.27228 * 6 5 4 8 8 C 1.34776 * 118.23303 * 134.71786 * 7 6 5 9 9 O 1.21700 * 120.00241 * 355.13167 * 8 7 6 10 10 C 1.46435 * 120.00297 * 175.12644 * 8 7 6 11 11 C 1.34806 * 120.00156 * 185.20108 * 10 8 7 12 12 C 1.47209 * 119.99782 * 180.02562 * 11 10 8 13 13 C 1.39834 * 120.16889 * 359.71733 * 12 11 10 14 14 C 1.37894 * 119.82356 * 179.78858 * 13 12 11 15 15 C 1.38401 * 120.17128 * 0.47023 * 14 13 12 16 16 C 1.50705 * 119.82911 * 179.76320 * 15 14 13 17 17 O 1.42899 * 109.46986 * 245.02461 * 16 15 14 18 18 Si 1.86303 * 109.46864 * 5.02078 * 16 15 14 19 19 H 1.48509 * 109.46969 * 60.00180 * 18 16 15 20 20 H 1.48499 * 109.46957 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47233 * 300.00286 * 18 16 15 22 22 C 1.38407 * 120.34576 * 359.78671 * 15 14 13 23 23 C 1.37891 * 120.16807 * 359.97438 * 22 15 14 24 24 C 1.42771 * 123.53536 * 314.69402 * 7 6 5 25 25 C 1.54958 * 107.20703 * 96.96839 * 24 7 6 26 26 H 1.09000 * 109.47016 * 300.07925 * 1 2 3 27 27 H 1.09003 * 109.47040 * 60.07285 * 1 2 3 28 28 H 1.08994 * 109.47267 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47235 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.46905 * 299.92676 * 3 2 1 31 31 H 1.09001 * 109.47154 * 59.92481 * 3 2 1 32 32 H 1.09008 * 109.72802 * 170.47102 * 4 2 1 33 33 H 1.09003 * 109.72893 * 291.09296 * 4 2 1 34 34 H 1.09008 * 108.45750 * 205.85373 * 5 4 2 35 35 H 1.08998 * 108.45765 * 323.19249 * 5 4 2 36 36 H 1.08996 * 107.77298 * 192.10714 * 6 5 4 37 37 H 1.09003 * 107.69095 * 76.36612 * 6 5 4 38 38 H 1.08001 * 119.99549 * 5.19732 * 10 8 7 39 39 H 1.07994 * 119.99909 * 359.97438 * 11 10 8 40 40 H 1.08000 * 120.08964 * 0.02922 * 13 12 11 41 41 H 1.07998 * 119.91524 * 180.23665 * 14 13 12 42 42 H 1.08995 * 109.47065 * 125.02332 * 16 15 14 43 43 H 0.96696 * 113.99980 * 59.99635 * 17 16 15 44 44 H 1.07998 * 119.91617 * 179.97438 * 22 15 14 45 45 H 1.08002 * 120.08453 * 179.97438 * 23 22 15 46 46 H 1.08997 * 109.90691 * 337.54155 * 24 7 6 47 47 H 1.09003 * 109.97451 * 216.42834 * 24 7 6 48 48 H 1.09001 * 109.04408 * 163.35005 * 25 24 7 49 49 H 1.09004 * 109.04672 * 44.47043 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4831 1.7568 0.0000 4 6 2.4914 -0.8882 1.5429 5 6 1.7982 -2.2138 1.6347 6 6 2.4534 -3.3398 0.8073 7 7 2.8526 -3.0358 -0.5756 8 6 4.0677 -3.4434 -0.9927 9 8 4.8366 -3.9667 -0.2078 10 6 4.4628 -3.2568 -2.3903 11 6 5.6338 -3.7574 -2.8324 12 6 6.0312 -3.5692 -4.2373 13 6 5.1939 -2.8769 -5.1177 14 6 5.5752 -2.7010 -6.4312 15 6 6.7785 -3.2160 -6.8811 16 6 7.1851 -3.0238 -8.3195 17 8 7.2373 -4.2933 -8.9734 18 14 5.9400 -1.9346 -9.1765 19 1 5.8857 -0.6153 -8.4969 20 1 6.3403 -1.7458 -10.5940 21 1 4.6014 -2.5751 -9.1218 22 6 7.6101 -3.9070 -6.0171 23 6 7.2451 -4.0870 -4.6996 24 6 2.0221 -2.3328 -1.4999 25 6 2.4633 -0.8476 -1.4748 26 1 -0.3633 0.5151 0.8893 27 1 -0.3633 0.5127 -0.8907 28 1 -0.3633 -1.0276 0.0005 29 1 3.5731 1.7574 0.0005 30 1 2.1206 2.2700 -0.8906 31 1 2.1184 2.2708 0.8893 32 1 3.5681 -1.0405 1.4670 33 1 2.2656 -0.2929 2.4277 34 1 1.7767 -2.5202 2.6806 35 1 0.7702 -2.0900 1.2943 36 1 1.7571 -4.1777 0.7756 37 1 3.3421 -3.6714 1.3444 38 1 3.8159 -2.7181 -3.0670 39 1 6.2807 -4.2958 -2.1557 40 1 4.2530 -2.4776 -4.7690 41 1 4.9315 -2.1632 -7.1115 42 1 8.1676 -2.5537 -8.3596 43 1 6.3956 -4.7693 -8.9759 44 1 8.5473 -4.3063 -6.3757 45 1 7.8949 -4.6268 -4.0267 46 1 0.9781 -2.4151 -1.1977 47 1 2.1514 -2.7415 -2.5021 48 1 2.0706 -0.3449 -2.3586 49 1 3.5521 -0.7996 -1.4943 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915400_12360594.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 18:05:43 Heat of formation + Delta-G solvation = -55.434586 kcal Electronic energy + Delta-G solvation = -26370.877666 eV Core-core repulsion = 22807.848549 eV Total energy + Delta-G solvation = -3563.029117 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.167 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.35074 -40.54656 -37.85210 -37.55935 -35.28381 -34.33525 -32.22176 -31.32164 -31.16959 -28.97293 -28.34086 -27.89854 -26.59151 -24.56624 -24.13136 -23.66618 -22.21555 -20.90035 -19.50665 -18.99564 -18.25790 -17.37776 -16.96298 -16.73062 -16.56578 -16.18622 -15.74225 -15.30595 -15.21063 -15.06072 -14.90200 -14.75511 -14.48944 -14.36182 -14.09713 -13.92126 -13.81723 -13.47583 -13.42819 -13.23636 -13.11742 -13.07497 -13.02168 -12.78231 -12.58312 -12.26885 -12.23113 -12.16025 -12.03331 -11.66707 -11.54486 -11.36932 -11.00302 -10.72950 -10.53964 -10.39537 -10.20379 -9.99787 -9.67458 -9.23659 -0.57612 0.37271 0.86065 1.18446 1.46776 1.53745 1.88054 1.93228 2.00880 2.02361 2.05244 2.20108 2.76731 2.79830 3.41467 3.55678 3.64346 3.77738 3.87126 3.90180 4.07876 4.14397 4.15675 4.23116 4.33316 4.37649 4.42968 4.48384 4.61130 4.61951 4.68998 4.79174 4.80511 4.82909 4.89553 4.93145 4.93576 4.97164 4.97747 5.02476 5.09193 5.13548 5.25359 5.36083 5.37650 5.46740 5.51929 5.57785 5.57949 5.67332 5.75749 5.88754 6.37914 6.69892 7.12627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.455 4.455 2 Si 1.080 2.920 3 C -0.469 4.469 4 C -0.422 4.422 5 C -0.113 4.113 6 C 0.101 3.899 7 N -0.589 5.589 8 C 0.535 3.465 9 O -0.593 6.593 10 C -0.212 4.212 11 C -0.021 4.021 12 C -0.081 4.081 13 C -0.096 4.096 14 C -0.134 4.134 15 C -0.111 4.111 16 C -0.084 4.084 17 O -0.553 6.553 18 Si 0.983 3.017 19 H -0.255 1.255 20 H -0.279 1.279 21 H -0.246 1.246 22 C -0.102 4.102 23 C -0.102 4.102 24 C 0.110 3.890 25 C -0.466 4.466 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.060 0.940 38 H 0.163 0.837 39 H 0.122 0.878 40 H 0.152 0.848 41 H 0.138 0.862 42 H 0.123 0.877 43 H 0.389 0.611 44 H 0.136 0.864 45 H 0.138 0.862 46 H 0.105 0.895 47 H 0.098 0.902 48 H 0.110 0.890 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.469 2.743 -3.050 6.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.562 4.562 2 Si 1.270 2.730 3 C -0.575 4.575 4 C -0.505 4.505 5 C -0.151 4.151 6 C -0.022 4.022 7 N -0.319 5.319 8 C 0.328 3.672 9 O -0.477 6.477 10 C -0.233 4.233 11 C -0.041 4.041 12 C -0.081 4.081 13 C -0.114 4.114 14 C -0.152 4.152 15 C -0.111 4.111 16 C -0.194 4.194 17 O -0.360 6.360 18 Si 0.807 3.193 19 H -0.179 1.179 20 H -0.205 1.205 21 H -0.170 1.170 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.013 4.013 25 C -0.552 4.552 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.180 0.820 39 H 0.140 0.860 40 H 0.170 0.830 41 H 0.156 0.844 42 H 0.141 0.859 43 H 0.238 0.762 44 H 0.154 0.846 45 H 0.155 0.845 46 H 0.123 0.877 47 H 0.116 0.884 48 H 0.129 0.871 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.113 3.161 -3.106 6.766 hybrid contribution 0.303 -0.444 0.704 0.886 sum -4.810 2.717 -2.402 6.024 Atomic orbital electron populations 1.26259 1.20366 1.04876 1.04732 0.77859 0.66372 0.64214 0.64531 1.26370 1.05786 1.20856 1.04467 1.25966 1.03929 1.03385 1.17218 1.20990 1.00300 0.93870 0.99920 1.21717 1.00715 0.98174 0.81547 1.47033 1.16098 1.56147 1.12584 1.18870 0.81522 0.77722 0.89127 1.90782 1.52892 1.46575 1.57410 1.23141 0.99646 1.05971 0.94496 1.22400 0.95047 0.93253 0.93371 1.19097 0.95796 1.00485 0.92748 1.21589 0.99927 0.97106 0.92743 1.21202 0.96435 1.00817 0.96705 1.20633 0.95007 0.98581 0.96919 1.25103 1.10900 0.92610 0.90795 1.86500 1.39451 1.31884 1.78147 0.85211 0.77556 0.78366 0.78187 1.17912 1.20471 1.17004 1.21114 1.00182 0.98004 0.92674 1.21641 0.95703 0.98340 0.96260 1.21249 0.95798 0.90339 0.93898 1.26871 1.06801 1.02763 1.18765 0.91513 0.90557 0.90466 0.92282 0.90865 0.91575 0.92933 0.90449 0.90797 0.89954 0.90922 0.92103 0.81988 0.86022 0.83036 0.84430 0.85908 0.76173 0.84618 0.84451 0.87688 0.88418 0.87104 0.90952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 3.25 8.35 113.37 0.95 4.19 16 2 Si 1.08 -7.13 10.48 68.60 0.72 -6.41 16 3 C -0.47 1.39 8.65 113.37 0.98 2.37 16 4 C -0.42 0.62 4.83 70.98 0.34 0.96 16 5 C -0.11 0.25 5.32 30.04 0.16 0.41 16 6 C 0.10 0.15 5.98 86.71 0.52 0.67 16 7 N -0.59 -0.50 2.45 -827.73 -2.03 -2.53 16 8 C 0.54 3.56 7.14 86.38 0.62 4.18 16 9 O -0.59 -9.36 15.39 -4.35 -0.07 -9.42 16 10 C -0.21 -0.23 8.01 23.62 0.19 -0.04 16 11 C -0.02 -0.05 9.46 23.84 0.23 0.17 16 12 C -0.08 -0.06 5.87 -20.15 -0.12 -0.18 16 13 C -0.10 0.21 9.41 22.57 0.21 0.42 16 14 C -0.13 0.30 8.65 22.23 0.19 0.49 16 15 C -0.11 0.11 5.36 -19.78 -0.11 0.01 16 16 C -0.08 0.21 2.80 71.24 0.20 0.41 16 17 O -0.55 0.40 12.83 -148.98 -1.91 -1.51 16 18 Si 0.98 -3.09 25.12 68.60 1.72 -1.37 16 19 H -0.26 0.58 7.11 99.48 0.71 1.29 16 20 H -0.28 -0.31 7.11 99.48 0.71 0.40 16 21 H -0.25 1.00 7.04 99.48 0.70 1.69 16 22 C -0.10 -0.01 9.66 22.23 0.21 0.20 16 23 C -0.10 -0.07 9.80 22.57 0.22 0.15 16 24 C 0.11 -0.69 5.15 87.73 0.45 -0.24 16 25 C -0.47 3.26 4.29 72.65 0.31 3.57 16 26 H 0.07 -0.39 7.96 -2.39 -0.02 -0.41 16 27 H 0.08 -0.59 7.96 -2.39 -0.02 -0.61 16 28 H 0.08 -0.64 6.53 -2.39 -0.02 -0.66 16 29 H 0.06 -0.06 7.96 -2.39 -0.02 -0.08 16 30 H 0.07 -0.29 7.96 -2.39 -0.02 -0.30 16 31 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 32 H 0.05 0.17 7.91 -2.38 -0.02 0.15 16 33 H 0.08 -0.15 7.99 -2.39 -0.02 -0.17 16 34 H 0.07 -0.14 8.14 -2.38 -0.02 -0.16 16 35 H 0.08 -0.53 5.94 -2.39 -0.01 -0.54 16 36 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 37 H 0.06 0.48 6.69 -2.39 -0.02 0.46 16 38 H 0.16 -0.91 4.11 -2.91 -0.01 -0.92 16 39 H 0.12 0.64 7.53 -2.91 -0.02 0.62 16 40 H 0.15 -1.12 6.17 -2.91 -0.02 -1.14 16 41 H 0.14 -0.76 4.84 -2.91 -0.01 -0.78 16 42 H 0.12 -0.45 7.96 -2.39 -0.02 -0.47 16 43 H 0.39 -2.78 8.70 -74.06 -0.64 -3.43 16 44 H 0.14 -0.17 8.06 -2.91 -0.02 -0.19 16 45 H 0.14 -0.21 8.06 -2.91 -0.02 -0.23 16 46 H 0.10 -1.05 7.14 -2.39 -0.02 -1.07 16 47 H 0.10 -0.90 6.11 -2.39 -0.01 -0.92 16 48 H 0.11 -1.22 7.89 -2.39 -0.02 -1.24 16 49 H 0.07 -0.27 7.11 -2.38 -0.02 -0.29 16 Total: 0.00 -17.79 381.07 5.05 -12.74 By element: Atomic # 1 Polarization: -10.30 SS G_CDS: 1.05 Total: -9.25 kcal Atomic # 6 Polarization: 12.19 SS G_CDS: 5.56 Total: 17.75 kcal Atomic # 7 Polarization: -0.50 SS G_CDS: -2.03 Total: -2.53 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: -1.98 Total: -10.94 kcal Atomic # 14 Polarization: -10.23 SS G_CDS: 2.44 Total: -7.78 kcal Total: -17.79 5.05 -12.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915400_12360594.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.693 kcal (2) G-P(sol) polarization free energy of solvation -17.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds