Wall clock time and date at job start Thu Mar 4 2021 18:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86306 * 1 3 3 C 1.86294 * 109.00391 * 2 1 4 4 C 1.86973 * 109.01961 * 241.16805 * 2 1 3 5 5 C 1.54092 * 109.19622 * 199.18480 * 4 2 1 6 6 C 1.52935 * 108.12480 * 321.33252 * 5 4 2 7 7 N 1.45487 * 105.50554 * 102.39882 * 6 5 4 8 8 C 1.34774 * 116.96293 * 81.13649 * 7 6 5 9 9 O 1.21570 * 119.99815 * 198.72605 * 8 7 6 10 10 C 1.47690 * 120.00191 * 18.73213 * 8 7 6 11 11 C 1.39618 * 120.15611 * 328.42563 * 10 8 7 12 12 C 1.38107 * 119.85479 * 179.97438 * 11 10 8 13 13 F 1.35099 * 119.91675 * 180.02562 * 12 11 10 14 14 C 1.38614 * 120.16414 * 0.02562 * 12 11 10 15 15 C 1.50701 * 119.84089 * 179.97438 * 14 12 11 16 16 O 1.42896 * 109.47345 * 74.99524 * 15 14 12 17 17 Si 1.86304 * 109.47077 * 314.99131 * 15 14 12 18 18 H 1.48500 * 109.47025 * 60.00130 * 17 15 14 19 19 H 1.48498 * 109.46959 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.46946 * 300.00163 * 17 15 14 21 21 C 1.38230 * 120.31461 * 359.97438 * 14 12 11 22 22 C 1.38270 * 120.14651 * 0.02562 * 21 14 12 23 23 F 1.35097 * 120.08409 * 180.02562 * 22 21 14 24 24 C 1.42433 * 126.06732 * 260.86221 * 7 6 5 25 25 C 1.55245 * 107.47766 * 64.51212 * 24 7 6 26 26 H 1.08994 * 109.47171 * 301.09300 * 1 2 3 27 27 H 1.09001 * 109.47105 * 61.09977 * 1 2 3 28 28 H 1.09005 * 109.46883 * 181.09031 * 1 2 3 29 29 H 1.09007 * 109.46700 * 159.64045 * 3 2 1 30 30 H 1.09000 * 109.47262 * 279.63647 * 3 2 1 31 31 H 1.08997 * 109.47607 * 39.64293 * 3 2 1 32 32 H 1.09002 * 109.52050 * 319.09826 * 4 2 1 33 33 H 1.08998 * 109.51842 * 79.21603 * 4 2 1 34 34 H 1.08993 * 109.73849 * 81.05357 * 5 4 2 35 35 H 1.09001 * 109.73947 * 201.70691 * 5 4 2 36 36 H 1.08999 * 110.17856 * 343.49581 * 6 5 4 37 37 H 1.08998 * 110.45257 * 221.44502 * 6 5 4 38 38 H 1.08003 * 120.06842 * 359.96314 * 11 10 8 39 39 H 1.09007 * 109.46863 * 194.99488 * 15 14 12 40 40 H 0.96705 * 113.99878 * 299.99286 * 16 15 14 41 41 H 1.07998 * 119.92439 * 180.28549 * 21 14 12 42 42 H 1.09001 * 109.85631 * 184.00667 * 24 7 6 43 43 H 1.09000 * 109.84968 * 304.94708 * 24 7 6 44 44 H 1.09000 * 109.51564 * 57.36660 * 25 24 7 45 45 H 1.09005 * 109.51355 * 177.52887 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4697 1.7614 0.0000 4 6 2.4724 -0.8524 -1.5485 5 6 3.9369 -1.2864 -1.3452 6 6 4.6551 -0.1855 -0.5634 7 7 4.7482 -0.6763 0.8030 8 6 5.7456 -1.5409 1.0751 9 8 5.6889 -2.2415 2.0670 10 6 6.9074 -1.6373 0.1684 11 6 6.7502 -1.4074 -1.1998 12 6 7.8410 -1.4987 -2.0420 13 9 7.6905 -1.2759 -3.3659 14 6 9.0898 -1.8182 -1.5322 15 6 10.2749 -1.9164 -2.4579 16 8 10.6930 -0.6038 -2.8374 17 14 9.7966 -2.8800 -3.9790 18 1 8.6819 -2.1870 -4.6737 19 1 10.9646 -2.9773 -4.8909 20 1 9.3621 -4.2441 -3.5845 21 6 9.2532 -2.0472 -0.1788 22 6 8.1700 -1.9593 0.6761 23 9 8.3312 -2.1829 1.9986 24 6 3.8868 -0.3237 1.8812 25 6 2.4671 -0.8469 1.5339 26 1 -0.3633 0.5307 0.8800 27 1 -0.3633 0.4967 -0.8997 28 1 -0.3633 -1.0275 0.0196 29 1 3.4990 1.7911 0.3576 30 1 2.4254 2.1610 -1.0132 31 1 1.8399 2.3627 0.6556 32 1 1.8570 -1.7298 -1.7475 33 1 2.4093 -0.1646 -2.3917 34 1 3.9696 -2.2195 -0.7828 35 1 4.4182 -1.4232 -2.3135 36 1 4.0746 0.7366 -0.5930 37 1 5.6518 -0.0171 -0.9711 38 1 5.7778 -1.1589 -1.5986 39 1 11.0930 -2.4251 -1.9479 40 1 10.0134 -0.0921 -3.2974 41 1 10.2298 -2.2912 0.2122 42 1 4.2376 -0.7886 2.8026 43 1 3.8650 0.7597 1.9984 44 1 2.5070 -1.9229 1.3639 45 1 1.7881 -0.6328 2.3593 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915400_12360598.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 18:05:55 Heat of formation + Delta-G solvation = -85.361420 kcal Electronic energy + Delta-G solvation = -29728.145185 eV Core-core repulsion = 25508.674151 eV Total energy + Delta-G solvation = -4219.471034 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 343.133 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.47355 -50.16938 -42.30694 -40.00134 -38.25649 -37.68292 -34.70966 -33.31579 -31.40526 -31.20208 -29.20429 -28.76900 -27.73054 -27.14632 -24.51497 -24.41505 -22.90215 -22.83371 -20.96287 -19.51506 -18.84011 -18.64499 -18.09899 -17.83080 -17.22858 -17.04348 -16.81707 -16.57230 -16.18887 -16.08440 -15.73855 -15.45580 -15.04856 -14.88461 -14.66101 -14.59882 -14.43961 -14.14044 -13.91981 -13.72733 -13.66951 -13.56145 -13.35261 -13.18016 -12.93228 -12.85174 -12.78934 -12.56199 -12.36806 -12.15623 -11.96681 -11.87266 -11.36374 -11.07888 -10.77178 -10.67983 -10.50079 -10.47537 -10.24031 -9.90620 -9.61007 -0.77138 -0.31971 1.05087 1.28813 1.46658 1.52135 1.76681 1.87225 1.90632 1.93715 1.95447 2.12883 2.66444 2.75964 2.83448 3.03827 3.28065 3.34424 3.54360 3.71887 3.84319 3.89845 4.11570 4.19296 4.27045 4.29431 4.33689 4.39242 4.51645 4.57272 4.64567 4.67528 4.72371 4.78412 4.80928 4.82160 4.83069 4.88034 4.90555 4.97326 5.21884 5.36631 5.39086 5.46447 5.58268 5.59989 5.68251 6.02802 6.55355 6.85538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.466 4.466 2 Si 1.063 2.937 3 C -0.469 4.469 4 C -0.414 4.414 5 C -0.145 4.145 6 C 0.021 3.979 7 N -0.587 5.587 8 C 0.547 3.453 9 O -0.560 6.560 10 C -0.153 4.153 11 C -0.128 4.128 12 C 0.076 3.924 13 F -0.115 7.115 14 C -0.096 4.096 15 C -0.079 4.079 16 O -0.540 6.540 17 Si 0.960 3.040 18 H -0.225 1.225 19 H -0.269 1.269 20 H -0.265 1.265 21 C -0.107 4.107 22 C 0.127 3.873 23 F -0.132 7.132 24 C 0.114 3.886 25 C -0.446 4.446 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.062 0.938 35 H 0.098 0.902 36 H 0.140 0.860 37 H 0.127 0.873 38 H 0.218 0.782 39 H 0.142 0.858 40 H 0.389 0.611 41 H 0.176 0.824 42 H 0.071 0.929 43 H 0.099 0.901 44 H 0.062 0.938 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.022 4.203 -5.606 7.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.572 4.572 2 Si 1.254 2.746 3 C -0.576 4.576 4 C -0.499 4.499 5 C -0.183 4.183 6 C -0.099 4.099 7 N -0.317 5.317 8 C 0.336 3.664 9 O -0.439 6.439 10 C -0.157 4.157 11 C -0.145 4.145 12 C 0.057 3.943 13 F -0.094 7.094 14 C -0.098 4.098 15 C -0.189 4.189 16 O -0.347 6.347 17 Si 0.783 3.217 18 H -0.147 1.147 19 H -0.194 1.194 20 H -0.190 1.190 21 C -0.125 4.125 22 C 0.106 3.894 23 F -0.110 7.110 24 C -0.009 4.009 25 C -0.530 4.530 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.117 0.883 34 H 0.081 0.919 35 H 0.116 0.884 36 H 0.157 0.843 37 H 0.144 0.856 38 H 0.234 0.766 39 H 0.160 0.840 40 H 0.239 0.761 41 H 0.194 0.806 42 H 0.089 0.911 43 H 0.117 0.883 44 H 0.081 0.919 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.807 3.197 -5.504 6.617 hybrid contribution -0.434 -0.064 0.831 0.940 sum -2.241 3.134 -4.673 6.056 Atomic orbital electron populations 1.26336 1.22193 1.04094 1.04592 0.78421 0.65181 0.66230 0.64776 1.26686 1.06117 1.18904 1.05855 1.26566 0.98603 1.08361 1.16367 1.22218 0.96943 0.97956 1.01181 1.23688 1.05744 1.00761 0.79696 1.46791 1.29007 1.44414 1.11519 1.18456 0.82976 0.80483 0.84529 1.90825 1.79612 1.42668 1.30772 1.19865 0.93150 1.07693 0.94978 1.23102 1.02911 0.97577 0.90936 1.17482 0.93906 1.04218 0.78709 1.91622 1.96140 1.92166 1.29426 1.20550 0.94975 0.99019 0.95214 1.25070 0.97770 0.91696 1.04376 1.86569 1.43115 1.25641 1.79404 0.85787 0.80421 0.78304 0.77211 1.14714 1.19397 1.18954 1.21082 0.99430 1.00802 0.91218 1.17967 0.93765 0.99293 0.78331 1.91568 1.96083 1.91521 1.31867 1.21044 0.89314 1.01185 0.89312 1.27242 1.00095 1.07521 1.18119 0.91438 0.90801 0.91929 0.90222 0.89544 0.90724 0.90519 0.88261 0.91941 0.88420 0.84252 0.85612 0.76629 0.83991 0.76126 0.80625 0.91075 0.88344 0.91912 0.89292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 2.13 8.65 113.37 0.98 3.11 16 2 Si 1.06 -8.35 10.05 68.60 0.69 -7.67 16 3 C -0.47 4.13 7.38 113.37 0.84 4.97 16 4 C -0.41 3.31 5.09 72.35 0.37 3.68 16 5 C -0.15 0.95 4.52 30.94 0.14 1.09 16 6 C 0.02 -0.14 4.94 86.55 0.43 0.29 16 7 N -0.59 -0.18 2.18 -833.53 -1.82 -2.00 16 8 C 0.55 3.97 6.53 86.74 0.57 4.54 16 9 O -0.56 -9.15 15.15 -3.94 -0.06 -9.21 16 10 C -0.15 -0.52 5.66 -20.06 -0.11 -0.64 16 11 C -0.13 0.34 7.31 22.57 0.17 0.51 16 12 C 0.08 -0.23 6.60 22.33 0.15 -0.08 16 13 F -0.12 0.47 12.55 44.97 0.56 1.03 16 14 C -0.10 0.24 4.79 -19.78 -0.09 0.15 16 15 C -0.08 0.33 2.80 71.24 0.20 0.53 16 16 O -0.54 1.47 12.88 -148.98 -1.92 -0.44 16 17 Si 0.96 -2.45 26.08 68.60 1.79 -0.66 16 18 H -0.22 0.64 5.28 99.48 0.53 1.16 16 19 H -0.27 -0.20 7.11 99.48 0.71 0.51 16 20 H -0.27 -0.03 7.11 99.48 0.71 0.68 16 21 C -0.11 0.08 9.63 22.28 0.21 0.30 16 22 C 0.13 0.62 7.24 22.67 0.16 0.78 16 23 F -0.13 -1.41 16.02 44.97 0.72 -0.69 16 24 C 0.11 0.05 5.76 87.90 0.51 0.56 16 25 C -0.45 0.85 4.96 72.75 0.36 1.21 16 26 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 27 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 28 H 0.06 -0.20 7.96 -2.38 -0.02 -0.22 16 29 H 0.08 -0.73 4.90 -2.38 -0.01 -0.74 16 30 H 0.09 -0.91 7.96 -2.39 -0.02 -0.93 16 31 H 0.07 -0.58 7.96 -2.39 -0.02 -0.60 16 32 H 0.08 -0.51 7.97 -2.39 -0.02 -0.53 16 33 H 0.10 -1.09 7.97 -2.39 -0.02 -1.11 16 34 H 0.06 -0.14 7.39 -2.39 -0.02 -0.15 16 35 H 0.10 -0.97 6.90 -2.39 -0.02 -0.99 16 36 H 0.14 -1.46 2.84 -2.39 -0.01 -1.46 16 37 H 0.13 -1.09 4.17 -3.72 -0.02 -1.11 16 38 H 0.22 -1.56 1.74 -2.98 -0.01 -1.56 16 39 H 0.14 -1.04 7.76 -2.38 -0.02 -1.05 16 40 H 0.39 -3.36 8.39 -74.05 -0.62 -3.98 16 41 H 0.18 -0.90 7.99 -2.91 -0.02 -0.92 16 42 H 0.07 0.46 6.77 -2.39 -0.02 0.44 16 43 H 0.10 -0.44 6.56 -2.39 -0.02 -0.46 16 44 H 0.06 0.12 7.96 -2.39 -0.02 0.10 16 45 H 0.09 -0.24 7.96 -2.38 -0.02 -0.26 16 Total: 0.00 -18.36 343.35 5.84 -12.52 By element: Atomic # 1 Polarization: -14.87 SS G_CDS: 1.00 Total: -13.87 kcal Atomic # 6 Polarization: 16.12 SS G_CDS: 4.87 Total: 20.99 kcal Atomic # 7 Polarization: -0.18 SS G_CDS: -1.82 Total: -2.00 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: -1.98 Total: -9.65 kcal Atomic # 9 Polarization: -0.95 SS G_CDS: 1.28 Total: 0.34 kcal Atomic # 14 Polarization: -10.81 SS G_CDS: 2.48 Total: -8.33 kcal Total: -18.36 5.84 -12.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915400_12360598.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.840 kcal (2) G-P(sol) polarization free energy of solvation -18.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds