Wall clock time and date at job start Thu Mar 4 2021 18:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86295 * 108.82042 * 2 1 4 4 C 1.84151 * 108.84626 * 118.48504 * 2 1 3 5 5 C 1.55340 * 109.12737 * 207.38968 * 4 2 1 6 6 C 1.45979 * 108.92175 * 290.55073 * 5 4 2 7 7 N 1.46278 * 114.57743 * 60.35755 * 6 5 4 8 8 C 1.34773 * 122.82232 * 79.18933 * 7 6 5 9 9 O 1.21565 * 119.99996 * 4.52453 * 8 7 6 10 10 C 1.47722 * 119.99934 * 184.52157 * 8 7 6 11 11 C 1.39626 * 120.11802 * 353.37240 * 10 8 7 12 12 C 1.37866 * 119.87841 * 180.25586 * 11 10 8 13 13 C 1.38634 * 120.11540 * 359.42435 * 12 11 10 14 14 F 1.35096 * 119.87805 * 180.28037 * 13 12 11 15 15 C 1.38674 * 120.23996 * 0.59969 * 13 12 11 16 16 C 1.50698 * 119.93965 * 179.69903 * 15 13 12 17 17 O 1.42905 * 109.46883 * 74.98136 * 16 15 13 18 18 Si 1.86297 * 109.47383 * 314.97973 * 16 15 13 19 19 H 1.48505 * 109.46924 * 60.00249 * 18 16 15 20 20 H 1.48498 * 109.47248 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47113 * 300.00042 * 18 16 15 22 22 C 1.37815 * 120.12138 * 359.68216 * 15 13 12 23 23 C 1.44484 * 114.35532 * 259.46251 * 7 6 5 24 24 C 1.56285 * 107.52783 * 111.11952 * 23 7 6 25 25 H 1.09001 * 109.46630 * 301.51625 * 1 2 3 26 26 H 1.08999 * 109.47207 * 61.51242 * 1 2 3 27 27 H 1.08996 * 109.47086 * 181.52115 * 1 2 3 28 28 H 1.09003 * 109.47111 * 158.99257 * 3 2 1 29 29 H 1.09003 * 109.46677 * 278.99143 * 3 2 1 30 30 H 1.08994 * 109.46988 * 38.99166 * 3 2 1 31 31 H 1.09006 * 109.53245 * 87.49315 * 4 2 1 32 32 H 1.09005 * 109.58340 * 327.32036 * 4 2 1 33 33 H 1.08994 * 109.56150 * 170.71650 * 5 4 2 34 34 H 1.09001 * 109.65101 * 50.44062 * 5 4 2 35 35 H 1.08992 * 108.46232 * 299.04076 * 6 5 4 36 36 H 1.09001 * 108.33424 * 181.58226 * 6 5 4 37 37 H 1.07999 * 120.06090 * 359.97438 * 11 10 8 38 38 H 1.08002 * 119.93937 * 179.70780 * 12 11 10 39 39 H 1.09005 * 109.47386 * 194.98091 * 16 15 13 40 40 H 0.96705 * 113.99953 * 179.97438 * 17 16 15 41 41 H 1.07992 * 120.06338 * 180.02562 * 22 15 13 42 42 H 1.09008 * 109.89164 * 230.32361 * 23 7 6 43 43 H 1.08999 * 109.89535 * 351.43909 * 23 7 6 44 44 H 1.09000 * 110.09757 * 204.82341 * 24 23 7 45 45 H 1.08994 * 110.23758 * 83.21729 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4640 1.7634 0.0000 4 6 2.4579 -0.8312 1.5318 5 6 3.8556 -0.2667 1.9072 6 6 4.8300 -0.7195 0.9190 7 7 4.5518 -0.2893 -0.4511 8 6 4.8374 0.9489 -0.9002 9 8 5.4226 1.7360 -0.1820 10 6 4.4395 1.3495 -2.2653 11 6 3.8928 0.4087 -3.1402 12 6 3.5280 0.7867 -4.4148 13 6 3.6922 2.1010 -4.8244 14 9 3.3279 2.4674 -6.0726 15 6 4.2352 3.0393 -3.9596 16 6 4.4170 4.4645 -4.4142 17 8 3.1488 5.1229 -4.4362 18 14 5.1553 4.4816 -6.1245 19 1 4.2468 3.7749 -7.0629 20 1 5.3338 5.8861 -6.5726 21 1 6.4731 3.7975 -6.1016 22 6 4.6086 2.6709 -2.6852 23 6 3.9394 -1.3014 -1.2807 24 6 2.4719 -0.8483 -1.5700 25 1 -0.3633 0.5372 0.8761 26 1 -0.3633 0.4902 -0.9032 27 1 -0.3633 -1.0273 0.0273 28 1 3.4893 1.7978 0.3684 29 1 2.4292 2.1590 -1.0151 30 1 1.8252 2.3649 0.6466 31 1 2.5331 -1.9047 1.3582 32 1 1.7578 -0.6419 2.3456 33 1 4.1420 -0.6285 2.8946 34 1 3.8213 0.8227 1.9135 35 1 4.8613 -1.8088 0.9391 36 1 5.8111 -0.3418 1.2069 37 1 3.7601 -0.6144 -2.8205 38 1 3.1094 0.0587 -5.0940 39 1 5.0838 4.9834 -3.7254 40 1 3.1899 6.0465 -4.7197 41 1 5.0309 3.4024 -2.0124 42 1 4.4856 -1.3916 -2.2197 43 1 3.9375 -2.2580 -0.7582 44 1 1.8494 -1.7148 -1.7926 45 1 2.4512 -0.1486 -2.4054 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915400_12496548.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 18:09:56 Heat of formation + Delta-G solvation = -29.620557 kcal Electronic energy + Delta-G solvation = -27753.092266 eV Core-core repulsion = 24005.492313 eV Total energy + Delta-G solvation = -3747.599953 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.142 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.35321 -42.36304 -39.80332 -38.12200 -37.72396 -35.28765 -32.87438 -31.83354 -31.01990 -29.22462 -28.37262 -27.31031 -26.89611 -25.03492 -23.84281 -23.16034 -22.36168 -20.24370 -19.24558 -18.64725 -18.30204 -17.98354 -17.34574 -16.87717 -16.62527 -16.32329 -16.12179 -15.50822 -15.20377 -15.07345 -14.92560 -14.81278 -14.60417 -14.37313 -13.98171 -13.90718 -13.78290 -13.56569 -13.32392 -13.25159 -13.21555 -12.99391 -12.71268 -12.52425 -12.31032 -12.21179 -12.10348 -11.90003 -11.49304 -11.23155 -10.99410 -10.75792 -10.61354 -10.46670 -10.42129 -10.01300 -9.74975 -9.55119 -0.45933 0.02865 1.06717 1.36214 1.43871 1.58797 1.76043 1.86763 1.90158 1.98361 2.02705 2.54532 2.75510 3.06902 3.27057 3.41190 3.63667 3.76472 3.94295 3.99933 4.05297 4.11066 4.15331 4.29097 4.38475 4.56895 4.61280 4.66027 4.69321 4.74936 4.75215 4.77988 4.80812 4.81311 4.90913 4.97254 4.99797 5.03048 5.06770 5.10388 5.26840 5.40770 5.47301 5.55643 5.59896 5.63309 5.68325 6.34988 6.68639 7.04343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.466 4.466 2 Si 1.050 2.950 3 C -0.501 4.501 4 C -0.412 4.412 5 C -0.134 4.134 6 C 0.102 3.898 7 N -0.603 5.603 8 C 0.582 3.418 9 O -0.573 6.573 10 C -0.164 4.164 11 C -0.092 4.092 12 C -0.167 4.167 13 C 0.113 3.887 14 F -0.130 7.130 15 C -0.145 4.145 16 C -0.084 4.084 17 O -0.560 6.560 18 Si 0.964 3.036 19 H -0.246 1.246 20 H -0.252 1.252 21 H -0.265 1.265 22 C -0.024 4.024 23 C 0.078 3.922 24 C -0.463 4.463 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.052 0.948 30 H 0.047 0.953 31 H 0.104 0.896 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.046 0.954 35 H 0.122 0.878 36 H 0.057 0.943 37 H 0.239 0.761 38 H 0.175 0.825 39 H 0.093 0.907 40 H 0.399 0.601 41 H 0.134 0.866 42 H 0.115 0.885 43 H 0.140 0.860 44 H 0.129 0.871 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.878 -7.507 -0.651 7.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.572 4.572 2 Si 1.241 2.759 3 C -0.603 4.603 4 C -0.499 4.499 5 C -0.172 4.172 6 C -0.019 4.019 7 N -0.335 5.335 8 C 0.374 3.626 9 O -0.454 6.454 10 C -0.167 4.167 11 C -0.108 4.108 12 C -0.185 4.185 13 C 0.093 3.907 14 F -0.109 7.109 15 C -0.146 4.146 16 C -0.193 4.193 17 O -0.369 6.369 18 Si 0.786 3.214 19 H -0.169 1.169 20 H -0.176 1.176 21 H -0.190 1.190 22 C -0.043 4.043 23 C -0.043 4.043 24 C -0.549 4.549 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.099 0.901 28 H 0.094 0.906 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.123 0.877 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.065 0.935 35 H 0.140 0.860 36 H 0.075 0.925 37 H 0.254 0.746 38 H 0.193 0.807 39 H 0.111 0.889 40 H 0.249 0.751 41 H 0.152 0.848 42 H 0.132 0.868 43 H 0.157 0.843 44 H 0.147 0.853 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.388 -7.608 -0.932 7.675 hybrid contribution -0.220 1.828 0.297 1.865 sum -0.607 -5.781 -0.635 5.847 Atomic orbital electron populations 1.26379 1.22591 1.04674 1.03559 0.78496 0.64951 0.64452 0.68024 1.27441 1.06883 1.22978 1.02971 1.26375 1.00139 1.08393 1.15009 1.20748 0.95598 1.00884 0.99968 1.20319 0.98803 1.02179 0.80611 1.47501 1.61047 1.11664 1.13279 1.17913 0.77117 0.81416 0.86159 1.90780 1.43232 1.52393 1.59021 1.19883 1.06744 0.95032 0.95064 1.24135 0.90226 1.05432 0.90965 1.21571 1.04422 0.94139 0.98418 1.18318 0.97669 0.94688 0.80004 1.91554 1.89099 1.91867 1.38351 1.19349 1.05273 0.95098 0.94897 1.24692 0.91142 0.91299 1.12162 1.86470 1.28176 1.30779 1.91509 0.85757 0.78242 0.81035 0.76361 1.16912 1.17645 1.18979 1.20992 0.94225 0.95862 0.93246 1.22560 0.92195 0.92424 0.97137 1.28369 1.00484 1.10410 1.15643 0.92548 0.92017 0.90094 0.90614 0.92836 0.93323 0.87746 0.90775 0.89252 0.93510 0.85992 0.92469 0.74641 0.80746 0.88897 0.75092 0.84772 0.86801 0.84265 0.85256 0.87504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 0.82 8.65 113.37 0.98 1.80 16 2 Si 1.05 -4.73 9.89 68.60 0.68 -4.06 16 3 C -0.50 -2.73 6.75 113.37 0.77 -1.96 16 4 C -0.41 2.30 4.72 72.79 0.34 2.65 16 5 C -0.13 0.29 5.50 29.24 0.16 0.45 16 6 C 0.10 -0.42 4.87 84.27 0.41 -0.01 16 7 N -0.60 1.89 1.62 -896.19 -1.45 0.44 16 8 C 0.58 2.87 4.16 86.75 0.36 3.23 16 9 O -0.57 -7.71 14.99 -3.92 -0.06 -7.77 16 10 C -0.16 -0.53 4.05 -20.09 -0.08 -0.61 16 11 C -0.09 0.30 5.58 22.52 0.13 0.42 16 12 C -0.17 0.28 9.98 22.28 0.22 0.50 16 13 C 0.11 0.53 6.67 22.47 0.15 0.68 16 14 F -0.13 -0.93 12.82 44.97 0.58 -0.35 16 15 C -0.15 -0.86 4.80 -19.86 -0.10 -0.96 16 16 C -0.08 -0.28 2.79 71.24 0.20 -0.08 16 17 O -0.56 -2.31 12.86 -148.98 -1.92 -4.23 16 18 Si 0.96 2.86 26.09 68.60 1.79 4.65 16 19 H -0.25 -1.51 5.29 99.48 0.53 -0.99 16 20 H -0.25 -0.49 7.11 99.48 0.71 0.22 16 21 H -0.27 -1.32 7.11 99.48 0.71 -0.61 16 22 C -0.02 -0.16 9.02 22.52 0.20 0.05 16 23 C 0.08 -0.90 5.23 87.90 0.46 -0.44 16 24 C -0.46 4.76 4.22 73.12 0.31 5.07 16 25 H 0.06 0.03 7.96 -2.39 -0.02 0.01 16 26 H 0.06 -0.02 7.96 -2.39 -0.02 -0.04 16 27 H 0.08 -0.36 7.96 -2.39 -0.02 -0.37 16 28 H 0.08 0.66 2.69 -2.39 -0.01 0.66 16 29 H 0.05 0.40 6.54 -2.39 -0.02 0.38 16 30 H 0.05 0.36 7.96 -2.39 -0.02 0.34 16 31 H 0.10 -1.12 7.90 -2.38 -0.02 -1.14 16 32 H 0.07 -0.30 7.95 -2.38 -0.02 -0.32 16 33 H 0.09 -0.35 8.14 -2.39 -0.02 -0.37 16 34 H 0.05 0.19 6.02 -2.39 -0.01 0.17 16 35 H 0.12 -1.42 7.17 -2.39 -0.02 -1.44 16 36 H 0.06 0.01 7.85 -2.39 -0.02 -0.01 16 37 H 0.24 -2.51 1.92 -24.64 -0.05 -2.56 16 38 H 0.18 -1.36 8.06 -2.91 -0.02 -1.38 16 39 H 0.09 -0.01 7.77 -2.38 -0.02 -0.03 16 40 H 0.40 -2.02 8.74 -74.05 -0.65 -2.67 16 41 H 0.13 1.04 7.60 -2.91 -0.02 1.02 16 42 H 0.11 -1.65 5.68 -2.38 -0.01 -1.66 16 43 H 0.14 -2.51 7.17 -2.39 -0.02 -2.53 16 44 H 0.13 -2.03 8.00 -2.39 -0.02 -2.05 16 45 H 0.11 -0.88 3.94 -19.77 -0.08 -0.96 16 Total: 0.00 -21.83 329.75 4.98 -16.85 By element: Atomic # 1 Polarization: -17.18 SS G_CDS: 0.85 Total: -16.33 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: 4.51 Total: 10.79 kcal Atomic # 7 Polarization: 1.89 SS G_CDS: -1.45 Total: 0.44 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: -1.97 Total: -12.00 kcal Atomic # 9 Polarization: -0.93 SS G_CDS: 0.58 Total: -0.35 kcal Atomic # 14 Polarization: -1.87 SS G_CDS: 2.47 Total: 0.60 kcal Total: -21.83 4.98 -16.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915400_12496548.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.768 kcal (2) G-P(sol) polarization free energy of solvation -21.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds