Wall clock time and date at job start Thu Mar 4 2021 18:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86296 * 1 3 3 C 1.86303 * 109.00949 * 2 1 4 4 C 1.86978 * 109.02012 * 241.17094 * 2 1 3 5 5 C 1.54093 * 109.19528 * 199.18438 * 4 2 1 6 6 C 1.52931 * 108.12751 * 321.33098 * 5 4 2 7 7 N 1.45481 * 105.50344 * 102.40024 * 6 5 4 8 8 C 1.34774 * 116.96727 * 81.14082 * 7 6 5 9 9 O 1.21281 * 120.00242 * 179.74101 * 8 7 6 10 10 C 1.50708 * 120.00022 * 359.74206 * 8 7 6 11 11 N 1.46498 * 109.47069 * 180.02562 * 10 8 7 12 12 C 1.35042 * 125.92962 * 125.00375 * 11 10 8 13 13 C 1.35083 * 107.97647 * 180.02562 * 12 11 10 14 14 C 1.50695 * 126.07449 * 180.02562 * 13 12 11 15 15 O 1.42905 * 109.47173 * 104.73908 * 14 13 12 16 16 Si 1.86301 * 109.47236 * 344.73861 * 14 13 12 17 17 H 1.48500 * 109.47232 * 59.99830 * 16 14 13 18 18 H 1.48497 * 109.46985 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46757 * 299.99833 * 16 14 13 20 20 C 1.40850 * 107.84889 * 359.97438 * 13 12 11 21 21 C 1.48423 * 126.03605 * 179.97438 * 20 13 12 22 22 C 1.39327 * 120.11929 * 137.18625 * 21 20 13 23 23 C 1.38016 * 119.88153 * 179.97438 * 22 21 20 24 24 C 1.38320 * 120.11811 * 359.97438 * 23 22 21 25 25 C 1.38312 * 120.24186 * 0.02562 * 24 23 22 26 26 C 1.38022 * 120.12204 * 0.02562 * 25 24 23 27 27 N 1.31618 * 107.92608 * 0.22398 * 20 13 12 28 28 C 1.42427 * 126.06759 * 260.85864 * 7 6 5 29 29 C 1.55250 * 107.47705 * 64.51697 * 28 7 6 30 30 H 1.09001 * 109.46631 * 301.08922 * 1 2 3 31 31 H 1.08993 * 109.47212 * 61.09347 * 1 2 3 32 32 H 1.09006 * 109.47258 * 181.09653 * 1 2 3 33 33 H 1.08997 * 109.47018 * 159.55986 * 3 2 1 34 34 H 1.08999 * 109.47072 * 279.56145 * 3 2 1 35 35 H 1.08996 * 109.46598 * 39.56206 * 3 2 1 36 36 H 1.09001 * 109.51587 * 319.09579 * 4 2 1 37 37 H 1.08991 * 109.51821 * 79.20837 * 4 2 1 38 38 H 1.08998 * 109.73464 * 81.05707 * 5 4 2 39 39 H 1.09002 * 109.73275 * 201.74358 * 5 4 2 40 40 H 1.08998 * 110.17675 * 343.49396 * 6 5 4 41 41 H 1.08996 * 110.45175 * 221.44620 * 6 5 4 42 42 H 1.09001 * 109.47057 * 59.99755 * 10 8 7 43 43 H 1.09002 * 109.47113 * 300.00155 * 10 8 7 44 44 H 1.07996 * 126.00995 * 0.02562 * 12 11 10 45 45 H 1.09000 * 109.47484 * 224.73368 * 14 13 12 46 46 H 0.96700 * 113.99573 * 300.00093 * 15 14 13 47 47 H 1.08007 * 120.05915 * 359.95965 * 22 21 20 48 48 H 1.08004 * 119.94008 * 180.02562 * 23 22 21 49 49 H 1.08000 * 119.87936 * 179.74819 * 24 23 22 50 50 H 1.08007 * 119.93895 * 179.97438 * 25 24 23 51 51 H 1.08003 * 120.06500 * 180.02562 * 26 25 24 52 52 H 1.08998 * 109.85758 * 184.01268 * 28 7 6 53 53 H 1.09007 * 109.85520 * 304.95711 * 28 7 6 54 54 H 1.08998 * 109.51403 * 57.37231 * 29 28 7 55 55 H 1.09001 * 109.51197 * 177.52787 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4698 1.7614 0.0000 4 6 2.4723 -0.8524 -1.5486 5 6 3.9368 -1.2863 -1.3452 6 6 4.6551 -0.1855 -0.5635 7 7 4.7482 -0.6763 0.8029 8 6 5.7456 -1.5410 1.0750 9 8 5.8772 -1.9812 2.1974 10 6 6.6973 -1.9609 -0.0154 11 7 7.6820 -2.8985 0.5301 12 6 7.9472 -4.1345 0.0552 13 6 8.9123 -4.6796 0.8273 14 6 9.5157 -6.0500 0.6579 15 8 10.8206 -5.9288 0.0880 16 14 8.4377 -7.0683 -0.4697 17 1 8.3395 -6.4035 -1.7940 18 1 9.0321 -8.4189 -0.6361 19 1 7.0818 -7.1943 0.1226 20 6 9.2551 -3.7390 1.8181 21 6 10.2741 -3.9230 2.8815 22 6 11.1515 -2.8874 3.1957 23 6 12.0968 -3.0637 4.1858 24 6 12.1736 -4.2656 4.8660 25 6 11.3050 -5.2970 4.5581 26 6 10.3566 -5.1319 3.5691 27 7 8.5085 -2.6702 1.6377 28 6 3.8869 -0.3238 1.8810 29 6 2.4671 -0.8470 1.5338 30 1 -0.3632 0.5307 0.8801 31 1 -0.3633 0.4967 -0.8996 32 1 -0.3634 -1.0275 0.0197 33 1 3.4986 1.7913 0.3589 34 1 2.4268 2.1605 -1.0134 35 1 1.8391 2.3629 0.6545 36 1 1.8569 -1.7298 -1.7475 37 1 2.4092 -0.1646 -2.3917 38 1 3.9695 -2.2195 -0.7830 39 1 4.4182 -1.4224 -2.3137 40 1 4.0746 0.7366 -0.5930 41 1 5.6518 -0.0171 -0.9712 42 1 7.2099 -1.0828 -0.4083 43 1 6.1402 -2.4454 -0.8173 44 1 7.4713 -4.6045 -0.7928 45 1 9.5879 -6.5380 1.6299 46 1 10.8326 -5.5024 -0.7799 47 1 11.0923 -1.9484 2.6653 48 1 12.7772 -2.2614 4.4304 49 1 12.9175 -4.4008 5.6373 50 1 11.3696 -6.2336 5.0921 51 1 9.6785 -5.9378 3.3297 52 1 4.2377 -0.7887 2.8024 53 1 3.8649 0.7597 1.9983 54 1 2.5070 -1.9230 1.3639 55 1 1.7882 -0.6329 2.3593 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915400_12622748.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 18:10:08 Heat of formation + Delta-G solvation = 33.619078 kcal Electronic energy + Delta-G solvation = -34571.570292 eV Core-core repulsion = 30314.023491 eV Total energy + Delta-G solvation = -4257.546801 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 387.189 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -42.58331 -41.50131 -39.78762 -37.97677 -37.63146 -35.02162 -33.94679 -32.48877 -32.12487 -31.57848 -31.15374 -29.22763 -28.86710 -28.41071 -26.73450 -26.06714 -24.55860 -23.50474 -23.24126 -22.64288 -21.63902 -21.17235 -20.18945 -18.82794 -18.55145 -17.74789 -17.48578 -17.00254 -16.70740 -16.37271 -16.22898 -15.74912 -15.65015 -15.56439 -15.22418 -15.12546 -15.03328 -14.86165 -14.47490 -14.41745 -14.31449 -14.10004 -14.07010 -13.84658 -13.76426 -13.57136 -13.54535 -13.24848 -13.19341 -12.90288 -12.71794 -12.57254 -12.47510 -12.39120 -12.19228 -12.08401 -11.88510 -11.82193 -11.73634 -11.55823 -11.23949 -10.78590 -10.66292 -10.46562 -10.42814 -10.20891 -9.86310 -9.79140 -9.65843 -9.31299 0.12245 0.47797 0.77017 1.20104 1.31458 1.39310 1.47254 1.56323 1.70976 1.85709 1.86867 1.95224 1.97770 2.05439 2.66251 2.89331 3.14156 3.38880 3.62217 3.68457 3.81507 3.88108 3.99952 4.02963 4.05733 4.07772 4.13829 4.19634 4.25054 4.33240 4.41123 4.44864 4.52595 4.56201 4.60985 4.63239 4.74567 4.76541 4.78203 4.79541 4.80150 4.88340 4.90433 4.91614 4.98315 5.12115 5.14733 5.27703 5.29495 5.35844 5.48808 5.56203 5.56697 5.58413 5.61272 5.62774 5.68009 5.85222 6.04694 6.17390 6.57238 6.84548 7.04084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.469 4.469 2 Si 1.064 2.936 3 C -0.470 4.470 4 C -0.411 4.411 5 C -0.135 4.135 6 C 0.050 3.950 7 N -0.591 5.591 8 C 0.484 3.516 9 O -0.565 6.565 10 C 0.107 3.893 11 N -0.360 5.360 12 C 0.063 3.937 13 C -0.263 4.263 14 C -0.049 4.049 15 O -0.553 6.553 16 Si 0.985 3.015 17 H -0.226 1.226 18 H -0.271 1.271 19 H -0.263 1.263 20 C 0.112 3.888 21 C -0.026 4.026 22 C -0.111 4.111 23 C -0.127 4.127 24 C -0.119 4.119 25 C -0.124 4.124 26 C -0.106 4.106 27 N -0.291 5.291 28 C 0.114 3.886 29 C -0.444 4.444 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.062 0.938 39 H 0.099 0.901 40 H 0.129 0.871 41 H 0.115 0.885 42 H 0.144 0.856 43 H 0.169 0.831 44 H 0.213 0.787 45 H 0.105 0.895 46 H 0.385 0.615 47 H 0.116 0.884 48 H 0.142 0.858 49 H 0.147 0.853 50 H 0.148 0.852 51 H 0.131 0.869 52 H 0.065 0.935 53 H 0.087 0.913 54 H 0.063 0.937 55 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.322 2.263 -8.544 9.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.575 4.575 2 Si 1.254 2.746 3 C -0.576 4.576 4 C -0.498 4.498 5 C -0.173 4.173 6 C -0.070 4.070 7 N -0.324 5.324 8 C 0.271 3.729 9 O -0.443 6.443 10 C -0.017 4.017 11 N -0.141 5.141 12 C -0.082 4.082 13 C -0.275 4.275 14 C -0.160 4.160 15 O -0.360 6.360 16 Si 0.806 3.194 17 H -0.148 1.148 18 H -0.196 1.196 19 H -0.188 1.188 20 C -0.053 4.053 21 C -0.028 4.028 22 C -0.130 4.130 23 C -0.144 4.144 24 C -0.137 4.137 25 C -0.141 4.141 26 C -0.125 4.125 27 N -0.113 5.113 28 C -0.010 4.010 29 C -0.527 4.527 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.113 0.887 38 H 0.081 0.919 39 H 0.118 0.882 40 H 0.146 0.854 41 H 0.133 0.867 42 H 0.161 0.839 43 H 0.186 0.814 44 H 0.230 0.770 45 H 0.123 0.877 46 H 0.234 0.766 47 H 0.134 0.866 48 H 0.160 0.840 49 H 0.165 0.835 50 H 0.165 0.835 51 H 0.149 0.851 52 H 0.083 0.917 53 H 0.105 0.895 54 H 0.082 0.918 55 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.085 2.570 -7.610 9.011 hybrid contribution -0.095 -0.123 0.235 0.281 sum -4.179 2.447 -7.375 8.823 Atomic orbital electron populations 1.26383 1.22663 1.04055 1.04405 0.78423 0.64852 0.66074 0.65204 1.26726 1.05991 1.19319 1.05566 1.26486 0.99979 1.08034 1.15280 1.22122 0.95970 0.97565 1.01646 1.22880 1.05175 1.00466 0.78521 1.46999 1.29236 1.44394 1.11737 1.21242 0.82346 0.79723 0.89618 1.90790 1.72743 1.55959 1.24769 1.22177 0.88569 0.95902 0.95025 1.48168 1.30125 1.13057 1.22781 1.22820 0.98388 0.86172 1.00866 1.20677 1.05313 1.00469 1.01024 1.24562 0.90282 0.95483 1.05640 1.86500 1.27337 1.83196 1.38924 0.85284 0.76880 0.78329 0.78918 1.14811 1.19584 1.18757 1.20836 0.95861 0.92444 0.96183 1.17965 0.94603 0.95278 0.94967 1.21258 0.95567 0.97950 0.98238 1.21360 0.98519 0.98711 0.95847 1.21574 0.99267 0.93041 0.99812 1.21400 0.95116 1.00296 0.97324 1.21312 0.99119 0.96171 0.95918 1.77707 1.06754 1.23272 1.03539 1.20865 0.89276 1.00692 0.90129 1.27241 0.99999 1.07504 1.17988 0.91792 0.90862 0.91851 0.90360 0.89678 0.91298 0.90698 0.88743 0.91884 0.88209 0.85363 0.86741 0.83875 0.81362 0.77042 0.87716 0.76626 0.86590 0.84012 0.83538 0.83465 0.85133 0.91694 0.89458 0.91754 0.89995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 2.05 8.65 113.37 0.98 3.03 16 2 Si 1.06 -8.78 10.05 68.60 0.69 -8.09 16 3 C -0.47 3.86 7.38 113.37 0.84 4.70 16 4 C -0.41 4.12 5.09 72.35 0.37 4.49 16 5 C -0.13 1.50 4.74 30.94 0.15 1.65 16 6 C 0.05 -0.51 5.21 86.55 0.45 -0.06 16 7 N -0.59 1.24 2.18 -829.77 -1.81 -0.57 16 8 C 0.48 1.97 7.04 87.66 0.62 2.59 16 9 O -0.56 -9.21 14.68 -3.03 -0.04 -9.25 16 10 C 0.11 -0.35 5.47 85.64 0.47 0.11 16 11 N -0.36 -1.84 3.41 -351.90 -1.20 -3.04 16 12 C 0.06 0.09 9.96 83.47 0.83 0.92 16 13 C -0.26 -1.54 5.35 -19.95 -0.11 -1.64 16 14 C -0.05 -0.12 2.52 71.23 0.18 0.05 16 15 O -0.55 -2.00 12.88 -148.98 -1.92 -3.91 16 16 Si 0.98 -1.73 26.08 68.60 1.79 0.06 16 17 H -0.23 1.37 7.02 99.48 0.70 2.06 16 18 H -0.27 -0.50 7.11 99.48 0.71 0.21 16 19 H -0.26 -0.08 7.11 99.48 0.71 0.63 16 20 C 0.11 1.36 6.67 42.53 0.28 1.64 16 21 C -0.03 -0.32 5.74 -20.04 -0.12 -0.43 16 22 C -0.11 -1.19 9.78 22.48 0.22 -0.97 16 23 C -0.13 -0.85 10.03 22.24 0.22 -0.63 16 24 C -0.12 -0.58 10.04 22.31 0.22 -0.36 16 25 C -0.12 -0.69 10.03 22.24 0.22 -0.47 16 26 C -0.11 -0.94 8.88 22.48 0.20 -0.74 16 27 N -0.29 -3.99 11.66 -48.15 -0.56 -4.55 16 28 C 0.11 0.10 5.83 87.90 0.51 0.62 16 29 C -0.44 0.92 4.96 72.75 0.36 1.28 16 30 H 0.06 -0.20 7.96 -2.39 -0.02 -0.22 16 31 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 32 H 0.06 -0.21 7.96 -2.38 -0.02 -0.22 16 33 H 0.08 -0.66 4.90 -2.39 -0.01 -0.67 16 34 H 0.08 -0.85 7.96 -2.39 -0.02 -0.87 16 35 H 0.07 -0.45 7.96 -2.39 -0.02 -0.47 16 36 H 0.07 -0.65 7.97 -2.39 -0.02 -0.67 16 37 H 0.09 -1.15 7.97 -2.39 -0.02 -1.17 16 38 H 0.06 -0.54 6.97 -2.39 -0.02 -0.55 16 39 H 0.10 -1.53 8.14 -2.39 -0.02 -1.55 16 40 H 0.13 -1.53 2.84 -2.39 -0.01 -1.53 16 41 H 0.11 -1.73 6.47 -2.39 -0.02 -1.75 16 42 H 0.14 -1.25 7.23 -2.39 -0.02 -1.27 16 43 H 0.17 -2.08 6.53 -2.39 -0.02 -2.10 16 44 H 0.21 -1.65 6.35 -2.91 -0.02 -1.67 16 45 H 0.11 0.35 5.54 -2.39 -0.01 0.34 16 46 H 0.39 -1.46 8.70 -74.06 -0.64 -2.10 16 47 H 0.12 1.23 8.06 -2.91 -0.02 1.21 16 48 H 0.14 0.29 8.06 -2.91 -0.02 0.27 16 49 H 0.15 -0.07 8.06 -2.91 -0.02 -0.09 16 50 H 0.15 0.06 8.06 -2.91 -0.02 0.03 16 51 H 0.13 0.81 6.22 -2.91 -0.02 0.80 16 52 H 0.06 0.56 6.55 -2.39 -0.02 0.55 16 53 H 0.09 -0.22 6.56 -2.38 -0.02 -0.23 16 54 H 0.06 0.04 7.96 -2.39 -0.02 0.02 16 55 H 0.08 -0.14 7.96 -2.39 -0.02 -0.16 16 Total: 0.00 -30.00 422.45 4.87 -25.13 By element: Atomic # 1 Polarization: -12.58 SS G_CDS: 1.02 Total: -11.56 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: 6.90 Total: 15.78 kcal Atomic # 7 Polarization: -4.59 SS G_CDS: -3.57 Total: -8.16 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: -1.96 Total: -13.17 kcal Atomic # 14 Polarization: -10.51 SS G_CDS: 2.48 Total: -8.03 kcal Total: -30.00 4.87 -25.13 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915400_12622748.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.751 kcal (2) G-P(sol) polarization free energy of solvation -30.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds