Wall clock time and date at job start Thu Mar 4 2021 18:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86305 * 1 3 3 C 1.86296 * 109.60472 * 2 1 4 4 C 1.88880 * 109.60537 * 120.33177 * 2 1 3 5 5 C 1.46940 * 108.02327 * 55.38538 * 4 2 1 6 6 C 1.52528 * 114.66505 * 62.65671 * 5 4 2 7 7 N 1.45045 * 107.75087 * 268.14451 * 6 5 4 8 8 C 1.34770 * 120.98710 * 285.04003 * 7 6 5 9 9 O 1.21623 * 120.00287 * 160.32191 * 8 7 6 10 10 C 1.47292 * 119.99953 * 340.32339 * 8 7 6 11 11 C 1.39880 * 120.04878 * 44.50153 * 10 8 7 12 12 C 1.36422 * 120.18497 * 179.71272 * 11 10 8 13 13 C 1.39918 * 120.28404 * 0.56576 * 12 11 10 14 14 C 1.47564 * 119.95817 * 179.73655 * 13 12 11 15 15 C 1.36106 * 125.94766 * 359.97438 * 14 13 12 16 16 C 1.40800 * 106.73556 * 179.97438 * 15 14 13 17 17 C 1.34829 * 107.04924 * 359.97438 * 16 15 14 18 18 C 1.50704 * 125.65342 * 180.02562 * 17 16 15 19 19 O 1.42895 * 109.46947 * 299.99946 * 18 17 16 20 20 Si 1.86298 * 109.47238 * 179.97438 * 18 17 16 21 21 H 1.48501 * 109.47029 * 59.99676 * 20 18 17 22 22 H 1.48503 * 109.46963 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47501 * 299.99964 * 20 18 17 24 24 O 1.34236 * 108.69553 * 359.75293 * 17 16 15 25 25 C 1.39605 * 120.08481 * 359.71502 * 13 12 11 26 26 C 1.38271 * 119.81709 * 359.97438 * 25 13 12 27 27 O 1.35679 * 120.14310 * 180.02562 * 26 25 13 28 28 C 1.47158 * 118.16184 * 105.02221 * 7 6 5 29 29 C 1.53978 * 113.91263 * 320.04944 * 28 7 6 30 30 H 1.08997 * 109.46828 * 299.66617 * 1 2 3 31 31 H 1.08993 * 109.46595 * 59.66800 * 1 2 3 32 32 H 1.08994 * 109.46920 * 179.67112 * 1 2 3 33 33 H 1.09002 * 109.46997 * 180.32653 * 3 2 1 34 34 H 1.08994 * 109.47179 * 300.33005 * 3 2 1 35 35 H 1.09007 * 109.47298 * 60.33535 * 3 2 1 36 36 H 1.09004 * 109.75317 * 295.75627 * 4 2 1 37 37 H 1.08992 * 109.79145 * 175.04247 * 4 2 1 38 38 H 1.08998 * 108.42160 * 183.94912 * 5 4 2 39 39 H 1.08999 * 108.42148 * 301.36439 * 5 4 2 40 40 H 1.08998 * 109.78224 * 27.86101 * 6 5 4 41 41 H 1.08997 * 109.78225 * 148.68348 * 6 5 4 42 42 H 1.08000 * 119.90347 * 359.97438 * 11 10 8 43 43 H 1.08010 * 119.85782 * 180.29696 * 12 11 10 44 44 H 1.07999 * 126.62980 * 359.97438 * 15 14 13 45 45 H 1.08001 * 126.47039 * 179.97438 * 16 15 14 46 46 H 1.08996 * 109.46884 * 59.99591 * 18 17 16 47 47 H 0.96707 * 113.99643 * 299.99739 * 19 18 17 48 48 H 1.08000 * 120.09331 * 179.97438 * 25 13 12 49 49 H 0.96694 * 114.00265 * 269.98437 * 27 26 25 50 50 H 1.08998 * 108.59218 * 198.90116 * 28 7 6 51 51 H 1.09000 * 108.48061 * 81.11830 * 28 7 6 52 52 H 1.09004 * 108.88480 * 196.65950 * 29 28 7 53 53 H 1.08997 * 108.88885 * 78.18685 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4881 1.7550 0.0000 4 6 2.4968 -0.8986 1.5357 5 6 1.9016 -2.2419 1.5545 6 6 2.2898 -3.1266 0.3743 7 7 1.2912 -2.9450 -0.6618 8 6 0.0683 -3.5006 -0.5519 9 8 -0.8572 -3.0695 -1.2128 10 6 -0.1474 -4.6300 0.3687 11 6 0.3906 -4.5942 1.6594 12 6 0.1876 -5.6361 2.5163 13 6 -0.5496 -6.7527 2.1073 14 6 -0.7599 -7.8783 3.0381 15 6 -0.2937 -7.9573 4.3144 16 6 -0.7275 -9.1942 4.8286 17 6 -1.4303 -9.8035 3.8525 18 6 -2.0875 -11.1557 3.9564 19 8 -1.0964 -12.1469 4.2342 20 14 -2.9362 -11.5589 2.3477 21 1 -1.9350 -11.5780 1.2511 22 1 -3.5832 -12.8917 2.4499 23 1 -3.9662 -10.5288 2.0595 24 8 -1.4526 -9.0035 2.7748 25 6 -1.0869 -6.8032 0.8198 26 6 -0.8889 -5.7466 -0.0498 27 8 -1.4086 -5.7885 -1.3024 28 6 1.6496 -2.1362 -1.8378 29 6 2.4851 -0.8864 -1.5046 30 1 -0.3633 0.5086 0.8930 31 1 -0.3632 0.5190 -0.8870 32 1 -0.3633 -1.0276 -0.0059 33 1 3.5781 1.7524 -0.0059 34 1 2.1212 2.2713 -0.8870 35 1 2.1309 2.2679 0.8930 36 1 2.2005 -0.3519 2.4310 37 1 3.5831 -0.9775 1.4952 38 1 2.2069 -2.7410 2.4742 39 1 0.8167 -2.1378 1.5647 40 1 3.2709 -2.8336 0.0005 41 1 2.3101 -4.1706 0.6868 42 1 0.9647 -3.7374 1.9798 43 1 0.6014 -5.6007 3.5134 44 1 0.2951 -7.2149 4.8325 45 1 -0.5339 -9.5816 5.8180 46 1 -2.8226 -11.1415 4.7610 47 1 -0.4083 -12.2152 3.5582 48 1 -1.6556 -7.6653 0.5037 49 1 -0.8186 -6.1814 -1.9601 50 1 0.7325 -1.8190 -2.3341 51 1 2.2181 -2.7610 -2.5266 52 1 2.4539 -0.2043 -2.3543 53 1 3.5186 -1.1880 -1.3345 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915400_12807986.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 18:10:50 Heat of formation + Delta-G solvation = -71.743317 kcal Electronic energy + Delta-G solvation = -34798.525460 eV Core-core repulsion = 30340.972478 eV Total energy + Delta-G solvation = -4457.552982 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 389.166 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -43.75061 -42.00763 -40.03254 -38.38634 -37.98356 -37.56054 -34.57626 -34.19299 -33.45121 -31.67670 -31.26834 -30.25780 -29.09018 -28.39088 -27.39535 -26.93208 -24.80988 -24.21824 -23.30089 -22.86634 -22.28074 -21.50079 -20.28926 -19.63170 -18.60608 -18.36658 -17.88205 -17.56728 -17.44206 -17.27005 -16.65163 -16.27938 -16.11689 -15.79075 -15.64804 -15.32056 -14.93971 -14.92110 -14.85594 -14.63688 -14.20548 -14.03913 -13.89656 -13.86702 -13.83142 -13.77484 -13.57756 -13.47364 -13.31624 -13.19083 -13.11625 -12.85872 -12.80028 -12.61831 -12.36648 -12.31015 -12.17699 -12.08402 -11.92527 -11.62078 -11.15452 -11.01547 -10.77228 -10.72900 -10.57490 -10.49305 -10.17735 -10.00085 -9.62194 -9.00243 -0.73723 0.09769 0.67004 1.01814 1.34309 1.37155 1.43322 1.66759 1.72866 1.81502 1.85853 1.90266 1.99296 2.02624 2.52509 2.69888 2.92808 3.27503 3.38461 3.48785 3.62192 3.88432 3.90429 3.99489 4.00292 4.10512 4.14482 4.26177 4.35994 4.40729 4.40851 4.46701 4.62882 4.66852 4.70207 4.75491 4.77214 4.78420 4.80643 4.83189 4.84590 4.88260 4.94561 5.02939 5.05787 5.08056 5.08969 5.19724 5.25820 5.35283 5.44773 5.51376 5.53583 5.57045 5.62828 5.69374 5.96838 6.33931 6.54086 6.59451 7.02880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.474 4.474 2 Si 1.046 2.954 3 C -0.458 4.458 4 C -0.389 4.389 5 C -0.149 4.149 6 C 0.083 3.917 7 N -0.605 5.605 8 C 0.566 3.434 9 O -0.558 6.558 10 C -0.171 4.171 11 C -0.090 4.090 12 C -0.105 4.105 13 C 0.019 3.981 14 C 0.002 3.998 15 C -0.170 4.170 16 C -0.177 4.177 17 C -0.058 4.058 18 C -0.029 4.029 19 O -0.536 6.536 20 Si 0.979 3.021 21 H -0.263 1.263 22 H -0.251 1.251 23 H -0.271 1.271 24 O -0.186 6.186 25 C -0.152 4.152 26 C 0.150 3.850 27 O -0.501 6.501 28 C 0.121 3.879 29 C -0.427 4.427 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.053 0.947 40 H 0.119 0.881 41 H 0.096 0.904 42 H 0.191 0.809 43 H 0.172 0.828 44 H 0.184 0.816 45 H 0.171 0.829 46 H 0.154 0.846 47 H 0.393 0.607 48 H 0.133 0.867 49 H 0.408 0.592 50 H 0.058 0.942 51 H 0.070 0.930 52 H 0.093 0.907 53 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.245 -0.471 4.467 10.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.577 4.577 2 Si 1.237 2.763 3 C -0.565 4.565 4 C -0.476 4.476 5 C -0.187 4.187 6 C -0.039 4.039 7 N -0.338 5.338 8 C 0.356 3.644 9 O -0.437 6.437 10 C -0.175 4.175 11 C -0.107 4.107 12 C -0.123 4.123 13 C 0.019 3.981 14 C -0.047 4.047 15 C -0.189 4.189 16 C -0.196 4.196 17 C -0.108 4.108 18 C -0.141 4.141 19 O -0.343 6.343 20 Si 0.803 3.197 21 H -0.187 1.187 22 H -0.175 1.175 23 H -0.196 1.196 24 O -0.084 6.084 25 C -0.171 4.171 26 C 0.104 3.896 27 O -0.314 6.314 28 C 0.000 4.000 29 C -0.512 4.512 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.105 0.895 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.072 0.928 40 H 0.137 0.863 41 H 0.114 0.886 42 H 0.207 0.793 43 H 0.189 0.811 44 H 0.201 0.799 45 H 0.189 0.811 46 H 0.171 0.829 47 H 0.243 0.757 48 H 0.151 0.849 49 H 0.267 0.733 50 H 0.077 0.923 51 H 0.089 0.911 52 H 0.112 0.888 53 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 7.323 -0.345 3.774 8.245 hybrid contribution 0.068 0.064 -0.869 0.874 sum 7.391 -0.282 2.905 7.946 Atomic orbital electron populations 1.26641 1.24768 1.03306 1.02999 0.78811 0.63707 0.66282 0.67468 1.26210 1.06924 1.19248 1.04117 1.24974 1.06488 1.01908 1.14231 1.20769 1.00813 0.97279 0.99805 1.21963 0.93074 1.01383 0.87511 1.47778 1.12482 1.50680 1.22847 1.18149 0.82396 0.82147 0.81752 1.90829 1.42396 1.62685 1.47766 1.20500 1.03251 0.96062 0.97644 1.22355 0.96924 1.00747 0.90686 1.21104 0.98296 0.91060 1.01807 1.17963 0.97656 0.91600 0.90923 1.20583 1.00631 0.87578 0.95943 1.22262 1.03831 0.99599 0.93178 1.21835 1.01418 0.94992 1.01367 1.23391 1.05351 0.96018 0.86056 1.24290 0.94906 0.80911 1.13947 1.86549 1.40812 1.54721 1.52237 0.85204 0.79418 0.80215 0.74884 1.18691 1.17452 1.19585 1.83933 1.59331 1.26172 1.39007 1.21495 1.02436 0.99040 0.94124 1.18384 0.92402 0.92251 0.86567 1.84807 1.45313 1.84691 1.16591 1.21229 0.99634 0.92727 0.86453 1.26573 1.05579 1.02197 1.16872 0.92139 0.93077 0.92817 0.90138 0.92016 0.91389 0.89516 0.88030 0.87925 0.92847 0.86320 0.88635 0.79284 0.81073 0.79903 0.81109 0.82903 0.75692 0.84879 0.73309 0.92342 0.91139 0.88826 0.87863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 -1.91 8.41 113.37 0.95 -0.96 16 2 Si 1.05 -5.64 10.48 68.60 0.72 -4.92 16 3 C -0.46 1.78 8.65 113.37 0.98 2.76 16 4 C -0.39 3.51 4.77 70.10 0.33 3.84 16 5 C -0.15 1.22 3.09 28.56 0.09 1.31 16 6 C 0.08 -0.61 4.92 86.50 0.43 -0.19 16 7 N -0.60 0.01 1.85 -826.82 -1.53 -1.52 16 8 C 0.57 4.27 5.30 86.63 0.46 4.73 16 9 O -0.56 -9.60 15.07 8.57 0.13 -9.47 16 10 C -0.17 -0.83 5.43 -19.97 -0.11 -0.93 16 11 C -0.09 0.18 7.31 22.24 0.16 0.34 16 12 C -0.11 0.32 9.48 22.25 0.21 0.54 16 13 C 0.02 0.04 5.87 -20.08 -0.12 -0.07 16 14 C 0.00 0.01 7.02 24.24 0.17 0.18 16 15 C -0.17 0.20 10.26 22.40 0.23 0.43 16 16 C -0.18 0.07 10.76 22.11 0.24 0.31 16 17 C -0.06 -0.08 6.22 24.90 0.15 0.08 16 18 C -0.03 0.06 2.98 71.24 0.21 0.27 16 19 O -0.54 1.15 12.87 -148.98 -1.92 -0.77 16 20 Si 0.98 0.26 27.38 68.60 1.88 2.13 16 21 H -0.26 -0.61 7.11 99.48 0.71 0.10 16 22 H -0.25 -0.30 7.11 99.48 0.71 0.40 16 23 H -0.27 -1.17 7.11 99.48 0.71 -0.46 16 24 O -0.19 -0.93 8.78 -6.09 -0.05 -0.98 16 25 C -0.15 -0.83 9.65 22.61 0.22 -0.61 16 26 C 0.15 1.06 6.68 22.81 0.15 1.21 16 27 O -0.50 -4.33 12.40 -77.30 -0.96 -5.29 16 28 C 0.12 -0.03 5.80 86.58 0.50 0.47 16 29 C -0.43 2.39 4.36 72.31 0.32 2.71 16 30 H 0.06 0.22 7.96 -2.39 -0.02 0.20 16 31 H 0.05 0.32 7.96 -2.39 -0.02 0.30 16 32 H 0.05 0.47 5.18 -2.39 -0.01 0.46 16 33 H 0.08 -0.47 7.96 -2.39 -0.02 -0.49 16 34 H 0.06 -0.14 7.96 -2.39 -0.02 -0.16 16 35 H 0.07 -0.22 7.96 -2.38 -0.02 -0.24 16 36 H 0.09 -0.78 8.00 -2.38 -0.02 -0.80 16 37 H 0.10 -1.27 8.00 -2.39 -0.02 -1.29 16 38 H 0.10 -1.32 7.36 -2.39 -0.02 -1.34 16 39 H 0.05 -0.20 5.39 -2.39 -0.01 -0.21 16 40 H 0.12 -1.40 6.71 -2.39 -0.02 -1.41 16 41 H 0.10 -0.86 5.91 -2.39 -0.01 -0.88 16 42 H 0.19 -1.37 2.31 -2.94 -0.01 -1.37 16 43 H 0.17 -1.73 6.95 -2.91 -0.02 -1.75 16 44 H 0.18 -1.40 7.24 -2.91 -0.02 -1.42 16 45 H 0.17 -0.64 8.06 -2.91 -0.02 -0.66 16 46 H 0.15 -0.85 7.96 -2.39 -0.02 -0.87 16 47 H 0.39 -3.17 8.70 -74.05 -0.64 -3.81 16 48 H 0.13 0.77 7.90 -2.91 -0.02 0.75 16 49 H 0.41 -0.28 9.06 -74.06 -0.67 -0.95 16 50 H 0.06 0.34 7.11 -2.39 -0.02 0.32 16 51 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 52 H 0.09 -0.53 7.93 -2.39 -0.02 -0.55 16 53 H 0.10 -1.03 7.30 -2.39 -0.02 -1.05 16 Total: 0.00 -26.02 412.15 4.27 -21.76 By element: Atomic # 1 Polarization: -17.77 SS G_CDS: 0.41 Total: -17.35 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: 5.58 Total: 16.42 kcal Atomic # 7 Polarization: 0.01 SS G_CDS: -1.53 Total: -1.52 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: -2.80 Total: -16.51 kcal Atomic # 14 Polarization: -5.38 SS G_CDS: 2.60 Total: -2.79 kcal Total: -26.02 4.27 -21.76 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915400_12807986.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.988 kcal (2) G-P(sol) polarization free energy of solvation -26.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds