Wall clock time and date at job start Thu Mar 4 2021 18:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39284 * 121.03039 * 2 1 4 4 C 1.46493 * 134.20040 * 359.85084 * 3 2 1 5 5 C 1.50697 * 126.60073 * 0.41935 * 4 3 2 6 6 O 1.42899 * 109.47490 * 285.00341 * 5 4 3 7 7 Si 1.86303 * 109.47201 * 164.99779 * 5 4 3 8 8 H 1.48500 * 109.47015 * 180.02562 * 7 5 4 9 9 H 1.48499 * 109.47414 * 300.00519 * 7 5 4 10 10 H 1.48504 * 109.46930 * 60.00422 * 7 5 4 11 11 C 1.34185 * 106.80081 * 180.40069 * 4 3 2 12 12 N 1.36949 * 109.95360 * 0.02562 * 11 4 3 13 13 C 1.37152 * 110.11073 * 0.02562 * 12 11 4 14 14 N 1.32825 * 132.96629 * 179.97438 * 13 12 11 15 15 C 1.31308 * 121.89431 * 180.02562 * 14 13 12 16 16 C 1.39744 * 121.02876 * 179.73148 * 2 1 3 17 17 C 1.47665 * 120.46131 * 359.97438 * 16 2 1 18 18 O 1.21575 * 119.99665 * 304.92872 * 17 16 2 19 19 N 1.34773 * 120.00196 * 124.92201 * 17 16 2 20 20 C 1.45039 * 120.98559 * 4.09917 * 19 17 16 21 21 C 1.52523 * 107.75459 * 285.02283 * 20 19 17 22 22 C 1.46940 * 114.66542 * 268.14046 * 21 20 19 23 23 Si 1.88881 * 108.02075 * 62.65922 * 22 21 20 24 24 C 1.86294 * 109.60775 * 55.38432 * 23 22 21 25 25 C 1.86305 * 109.60606 * 175.71915 * 23 22 21 26 26 C 1.85386 * 108.65357 * 295.63366 * 23 22 21 27 27 C 1.47154 * 120.85175 * 184.10294 * 19 17 16 28 28 H 1.09003 * 109.47127 * 265.35554 * 1 2 3 29 29 H 1.09001 * 109.46774 * 25.35724 * 1 2 3 30 30 H 1.08996 * 109.46960 * 145.35164 * 1 2 3 31 31 H 1.09000 * 109.46707 * 45.00477 * 5 4 3 32 32 H 0.96694 * 114.00045 * 179.97438 * 6 5 4 33 33 H 1.07998 * 125.02057 * 180.02562 * 11 4 3 34 34 H 0.96990 * 124.94480 * 179.97438 * 12 11 4 35 35 H 1.07999 * 119.31129 * 179.97438 * 15 14 13 36 36 H 1.09000 * 109.94002 * 165.40391 * 20 19 17 37 37 H 1.08997 * 109.72762 * 44.51967 * 20 19 17 38 38 H 1.09004 * 108.41767 * 146.85436 * 21 20 19 39 39 H 1.08997 * 108.42210 * 29.43633 * 21 20 19 40 40 H 1.08999 * 109.75777 * 182.29161 * 22 21 20 41 41 H 1.09004 * 109.75429 * 302.97890 * 22 21 20 42 42 H 1.09006 * 109.46929 * 54.88773 * 24 23 22 43 43 H 1.08997 * 109.47276 * 174.88472 * 24 23 22 44 44 H 1.09003 * 109.47386 * 294.89282 * 24 23 22 45 45 H 1.08998 * 109.47009 * 60.00021 * 25 23 22 46 46 H 1.08993 * 109.46677 * 179.97438 * 25 23 22 47 47 H 1.08997 * 109.46748 * 299.99892 * 25 23 22 48 48 H 1.08999 * 108.89200 * 200.88257 * 26 23 22 49 49 H 1.08998 * 108.89128 * 319.36631 * 26 23 22 50 50 H 1.09006 * 108.58997 * 18.90557 * 27 19 17 51 51 H 1.08996 * 108.47957 * 261.12006 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1935 0.0000 4 6 1.8516 2.6100 -0.0027 5 6 0.4527 3.1705 0.0022 6 8 -0.1255 3.0197 -1.2958 7 14 0.5093 4.9778 0.4509 8 1 -0.8692 5.5299 0.4564 9 1 1.1102 5.1345 1.7998 10 1 1.3321 5.7096 -0.5456 11 6 2.9948 3.3125 -0.0101 12 7 4.0669 2.4604 -0.0129 13 6 3.6348 1.1588 -0.0078 14 7 4.2720 -0.0066 -0.0083 15 6 3.6266 -1.1502 -0.0031 16 6 2.2274 -1.1975 0.0056 17 6 1.5225 -2.4950 0.0123 18 8 0.7030 -2.7371 0.8770 19 7 1.7876 -3.4108 -0.9403 20 6 2.8230 -3.1809 -1.9297 21 6 2.2881 -2.1668 -2.9356 22 6 1.6214 -2.7560 -4.1049 23 14 0.1094 -3.7103 -3.4961 24 6 -0.9820 -2.5800 -2.4951 25 6 -0.8436 -4.3686 -4.9554 26 6 0.6842 -5.1188 -2.4366 27 6 1.0333 -4.6727 -1.0048 28 1 -0.3633 -0.0832 1.0243 29 1 -0.3633 0.9287 -0.4401 30 1 -0.3633 -0.8454 -0.5843 31 1 -0.1512 2.6334 0.7337 32 1 -1.0282 3.3593 -1.3661 33 1 3.0598 4.3906 -0.0134 34 1 4.9965 2.7372 -0.0184 35 1 4.1869 -2.0735 -0.0042 36 1 3.0641 -4.1139 -2.4391 37 1 3.7144 -2.7839 -1.4440 38 1 3.1209 -1.5564 -3.2852 39 1 1.5774 -1.5170 -2.4249 40 1 1.3081 -1.9660 -4.7874 41 1 2.3048 -3.4343 -4.6158 42 1 -1.2327 -1.6994 -3.0867 43 1 -1.8965 -3.1063 -2.2217 44 1 -0.4554 -2.2728 -1.5916 45 1 -0.2050 -5.0342 -5.5360 46 1 -1.7152 -4.9192 -4.6016 47 1 -1.1679 -3.5379 -5.5821 48 1 -0.1043 -5.8700 -2.3898 49 1 1.5679 -5.5655 -2.8924 50 1 0.1072 -4.5530 -0.4425 51 1 1.6273 -5.4548 -0.5321 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915400_12890568.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 18:11:18 Heat of formation + Delta-G solvation = -19.446842 kcal Electronic energy + Delta-G solvation = -32621.165107 eV Core-core repulsion = 28645.080955 eV Total energy + Delta-G solvation = -3976.084153 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.173 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.89299 -41.36727 -38.81016 -37.90052 -37.70329 -35.20550 -34.13758 -32.39620 -31.96788 -30.49035 -29.17089 -28.94791 -28.31186 -27.26286 -26.42313 -25.01663 -24.12978 -23.04874 -22.52125 -20.59985 -20.03746 -19.33097 -18.61540 -18.38079 -17.61251 -17.36388 -16.99288 -16.41000 -16.19625 -15.74793 -15.58846 -15.34062 -15.13883 -15.00673 -14.75774 -14.61602 -14.32233 -14.23077 -14.00243 -13.94150 -13.82863 -13.76768 -13.59506 -13.44546 -13.23393 -13.19581 -13.16801 -12.81890 -12.70154 -12.50908 -12.26062 -12.14910 -12.10504 -11.84428 -11.80200 -11.26318 -11.09556 -10.74463 -10.62336 -10.52071 -10.19823 -10.15093 -9.75936 -9.50008 -9.11894 -0.24669 -0.04522 1.20952 1.36616 1.50286 1.51161 1.62180 1.66610 1.81998 1.87714 1.96197 1.98529 2.04537 2.64868 2.69450 3.28931 3.39519 3.48214 3.58374 3.69908 3.87206 3.94098 4.06467 4.11694 4.17535 4.21241 4.32339 4.38883 4.42787 4.45359 4.51018 4.60516 4.72351 4.74974 4.75738 4.76868 4.81597 4.84251 4.86613 4.93383 4.99023 5.02218 5.06787 5.09880 5.24198 5.25251 5.33969 5.39700 5.52629 5.55516 5.63803 5.67478 5.73648 6.20330 6.32734 6.82541 6.88105 7.04137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.052 3.948 3 C -0.156 4.156 4 C -0.164 4.164 5 C -0.058 4.058 6 O -0.561 6.561 7 Si 0.985 3.015 8 H -0.255 1.255 9 H -0.258 1.258 10 H -0.250 1.250 11 C 0.078 3.922 12 N -0.563 5.563 13 C 0.283 3.717 14 N -0.509 5.509 15 C 0.170 3.830 16 C -0.223 4.223 17 C 0.580 3.420 18 O -0.566 6.566 19 N -0.597 5.597 20 C 0.088 3.912 21 C -0.126 4.126 22 C -0.400 4.400 23 Si 1.044 2.956 24 C -0.470 4.470 25 C -0.455 4.455 26 C -0.424 4.424 27 C 0.120 3.880 28 H 0.078 0.922 29 H 0.098 0.902 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.395 0.605 33 H 0.211 0.789 34 H 0.437 0.563 35 H 0.188 0.812 36 H 0.120 0.880 37 H 0.089 0.911 38 H 0.059 0.941 39 H 0.047 0.953 40 H 0.073 0.927 41 H 0.092 0.908 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.056 0.944 45 H 0.077 0.923 46 H 0.067 0.933 47 H 0.066 0.934 48 H 0.101 0.899 49 H 0.099 0.901 50 H 0.066 0.934 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.063 1.934 -3.767 4.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.043 3.957 3 C -0.163 4.163 4 C -0.171 4.171 5 C -0.168 4.168 6 O -0.369 6.369 7 Si 0.807 3.193 8 H -0.179 1.179 9 H -0.182 1.182 10 H -0.174 1.174 11 C -0.049 4.049 12 N -0.170 5.170 13 C 0.049 3.951 14 N -0.223 5.223 15 C 0.003 3.997 16 C -0.230 4.230 17 C 0.369 3.631 18 O -0.445 6.445 19 N -0.329 5.329 20 C -0.034 4.034 21 C -0.165 4.165 22 C -0.486 4.486 23 Si 1.237 2.763 24 C -0.574 4.574 25 C -0.563 4.563 26 C -0.510 4.510 27 C -0.002 4.002 28 H 0.097 0.903 29 H 0.116 0.884 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.245 0.755 33 H 0.227 0.773 34 H 0.278 0.722 35 H 0.205 0.795 36 H 0.138 0.862 37 H 0.107 0.893 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.092 0.908 41 H 0.111 0.889 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.075 0.925 45 H 0.096 0.904 46 H 0.087 0.913 47 H 0.085 0.915 48 H 0.119 0.881 49 H 0.118 0.882 50 H 0.085 0.915 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.272 2.573 -3.202 4.694 hybrid contribution -1.043 -0.112 0.230 1.074 sum 1.229 2.461 -2.972 4.050 Atomic orbital electron populations 1.21118 0.89531 1.04651 1.03219 1.19821 0.96831 0.89695 0.89328 1.19647 0.93228 0.94124 1.09280 1.19794 0.94666 0.90160 1.12499 1.24258 0.91319 1.12353 0.88843 1.86500 1.34900 1.85979 1.29540 0.85220 0.81530 0.72826 0.79773 1.17920 1.18241 1.17366 1.22188 0.84524 0.97011 1.01167 1.41509 1.10352 1.01843 1.63259 1.18712 0.89592 0.86658 1.00113 1.66510 1.40655 0.96282 1.18815 1.22858 0.89691 0.95010 0.92159 1.20435 0.95601 0.93319 1.13613 1.17902 0.81150 0.83239 0.80841 1.90780 1.36276 1.79648 1.37790 1.47854 1.36766 1.18688 1.29592 1.21843 0.90193 1.01915 0.89447 1.20398 1.00693 0.98758 0.96640 1.25163 1.14103 1.08409 1.00891 0.78810 0.66337 0.65545 0.65656 1.26577 1.10634 1.11109 1.09092 1.26171 1.08871 1.06597 1.14627 1.26529 1.07795 1.14705 1.01963 1.21270 0.96636 0.84136 0.98116 0.90325 0.88390 0.91149 0.90352 0.75510 0.77273 0.72189 0.79548 0.86227 0.89339 0.92269 0.93443 0.90770 0.88936 0.91804 0.91710 0.92488 0.90415 0.91331 0.91488 0.88074 0.88194 0.91513 0.91072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.93 8.71 71.24 0.62 -0.31 16 2 C 0.05 0.46 5.93 -19.25 -0.11 0.34 16 3 C -0.16 -1.25 6.16 -20.19 -0.12 -1.37 16 4 C -0.16 -0.57 5.61 -18.64 -0.10 -0.67 16 5 C -0.06 0.05 1.87 71.24 0.13 0.18 16 6 O -0.56 0.24 11.60 -148.98 -1.73 -1.49 16 7 Si 0.99 -3.94 26.09 68.60 1.79 -2.15 16 8 H -0.26 0.86 7.11 99.48 0.71 1.56 16 9 H -0.26 0.62 7.11 99.48 0.71 1.32 16 10 H -0.25 0.90 7.03 99.48 0.70 1.60 16 11 C 0.08 -0.06 10.44 82.97 0.87 0.81 16 12 N -0.56 -0.39 6.04 -192.24 -1.16 -1.55 16 13 C 0.28 2.02 8.42 134.02 1.13 3.15 16 14 N -0.51 -3.87 10.37 -191.74 -1.99 -5.86 16 15 C 0.17 0.92 9.17 85.20 0.78 1.71 16 16 C -0.22 -1.73 3.84 -19.99 -0.08 -1.81 16 17 C 0.58 4.88 4.53 86.73 0.39 5.27 16 18 O -0.57 -8.79 15.86 -3.95 -0.06 -8.86 16 19 N -0.60 -1.18 1.82 -826.41 -1.50 -2.68 16 20 C 0.09 -0.24 5.01 86.49 0.43 0.20 16 21 C -0.13 0.07 4.60 28.56 0.13 0.20 16 22 C -0.40 1.32 4.77 70.10 0.33 1.66 16 23 Si 1.04 -4.16 10.49 68.60 0.72 -3.44 16 24 C -0.47 -1.07 8.32 113.37 0.94 -0.12 16 25 C -0.46 1.42 8.65 113.37 0.98 2.40 16 26 C -0.42 2.08 4.36 72.31 0.32 2.39 16 27 C 0.12 0.04 5.64 86.59 0.49 0.53 16 28 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.10 0.45 4.88 -2.39 -0.01 0.44 16 30 H 0.07 0.59 4.90 -2.39 -0.01 0.58 16 31 H 0.08 -0.16 7.18 -2.39 -0.02 -0.18 16 32 H 0.39 -3.61 8.74 -74.06 -0.65 -4.26 16 33 H 0.21 -1.67 6.30 -2.91 -0.02 -1.69 16 34 H 0.44 -2.19 8.96 -92.72 -0.83 -3.02 16 35 H 0.19 -0.07 6.49 -2.91 -0.02 -0.09 16 36 H 0.12 -0.91 6.71 -2.39 -0.02 -0.93 16 37 H 0.09 -0.34 4.70 -2.39 -0.01 -0.35 16 38 H 0.06 0.02 8.14 -2.38 -0.02 0.01 16 39 H 0.05 0.18 5.65 -2.39 -0.01 0.16 16 40 H 0.07 -0.16 8.00 -2.39 -0.02 -0.18 16 41 H 0.09 -0.58 8.00 -2.39 -0.02 -0.60 16 42 H 0.06 0.16 7.96 -2.38 -0.02 0.14 16 43 H 0.06 0.16 7.96 -2.39 -0.02 0.14 16 44 H 0.06 0.33 3.51 -2.39 -0.01 0.32 16 45 H 0.08 -0.34 7.96 -2.39 -0.02 -0.36 16 46 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 47 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 48 H 0.10 -0.62 7.93 -2.39 -0.02 -0.64 16 49 H 0.10 -0.83 7.30 -2.39 -0.02 -0.85 16 50 H 0.07 0.31 7.20 -2.38 -0.02 0.29 16 51 H 0.07 -0.07 8.14 -2.39 -0.02 -0.09 16 Total: 0.00 -21.38 380.23 3.46 -17.92 By element: Atomic # 1 Polarization: -6.71 SS G_CDS: 0.26 Total: -6.44 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: 7.13 Total: 14.56 kcal Atomic # 7 Polarization: -5.44 SS G_CDS: -4.65 Total: -10.09 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: -1.79 Total: -10.35 kcal Atomic # 14 Polarization: -8.11 SS G_CDS: 2.51 Total: -5.60 kcal Total: -21.38 3.46 -17.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915400_12890568.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.525 kcal (2) G-P(sol) polarization free energy of solvation -21.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds