Wall clock time and date at job start Thu Mar 4 2021 18:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86309 * 1 3 3 C 1.86301 * 109.43852 * 2 1 4 4 C 1.88800 * 109.44112 * 119.92491 * 2 1 3 5 5 C 1.49876 * 108.19495 * 50.77964 * 4 2 1 6 6 C 1.54341 * 114.58602 * 84.44627 * 5 4 2 7 7 N 1.47118 * 117.93510 * 314.27017 * 6 5 4 8 8 C 1.34774 * 118.22960 * 134.72127 * 7 6 5 9 9 O 1.21576 * 120.00296 * 345.48140 * 8 7 6 10 10 C 1.47722 * 120.00279 * 165.47910 * 8 7 6 11 11 C 1.39712 * 120.01791 * 47.70836 * 10 8 7 12 12 C 1.37670 * 119.97348 * 179.78979 * 11 10 8 13 13 C 1.39511 * 120.02187 * 0.46175 * 12 11 10 14 14 C 1.48275 * 119.97254 * 179.76394 * 13 12 11 15 15 C 1.39408 * 120.12350 * 179.74381 * 14 13 12 16 16 C 1.37999 * 119.86801 * 179.79093 * 15 14 13 17 17 C 1.38339 * 120.12801 * 0.48924 * 16 15 14 18 18 C 1.50707 * 119.87149 * 179.71788 * 17 16 15 19 19 O 1.42896 * 109.47016 * 245.02518 * 18 17 16 20 20 Si 1.86299 * 109.47022 * 5.02369 * 18 17 16 21 21 H 1.48503 * 109.46959 * 59.99885 * 20 18 17 22 22 H 1.48496 * 109.47002 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47314 * 300.00032 * 20 18 17 24 24 C 1.38338 * 120.25581 * 359.74700 * 17 16 15 25 25 C 1.38000 * 120.12447 * 0.02562 * 24 17 16 26 26 C 1.39497 * 120.04739 * 359.78861 * 13 12 11 27 27 C 1.37661 * 120.02920 * 359.97438 * 26 13 12 28 28 C 1.42765 * 123.53778 * 314.69412 * 7 6 5 29 29 C 1.54963 * 107.20685 * 96.96949 * 28 7 6 30 30 H 1.09009 * 109.46842 * 300.07459 * 1 2 3 31 31 H 1.08998 * 109.47313 * 60.06952 * 1 2 3 32 32 H 1.09000 * 109.47201 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46782 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.46987 * 299.92553 * 3 2 1 35 35 H 1.08997 * 109.46983 * 59.92907 * 3 2 1 36 36 H 1.08997 * 109.72576 * 170.46704 * 4 2 1 37 37 H 1.08996 * 109.72863 * 291.09383 * 4 2 1 38 38 H 1.08995 * 108.45589 * 205.84839 * 5 4 2 39 39 H 1.09004 * 108.45183 * 323.19887 * 5 4 2 40 40 H 1.08996 * 107.76737 * 192.10819 * 6 5 4 41 41 H 1.09000 * 107.68596 * 76.36908 * 6 5 4 42 42 H 1.08001 * 120.01281 * 0.02562 * 11 10 8 43 43 H 1.07996 * 119.98926 * 180.20365 * 12 11 10 44 44 H 1.07998 * 120.06088 * 0.02946 * 15 14 13 45 45 H 1.08003 * 119.93825 * 180.22902 * 16 15 14 46 46 H 1.08998 * 109.46692 * 125.02363 * 18 17 16 47 47 H 0.96704 * 114.00501 * 60.00297 * 19 18 17 48 48 H 1.08000 * 119.93527 * 180.02562 * 24 17 16 49 49 H 1.08000 * 120.05961 * 179.97438 * 25 24 17 50 50 H 1.08008 * 119.98913 * 179.97438 * 26 13 12 51 51 H 1.07998 * 120.01786 * 179.97438 * 27 26 13 52 52 H 1.08999 * 109.91445 * 337.54643 * 28 7 6 53 53 H 1.09000 * 109.98014 * 216.43123 * 28 7 6 54 54 H 1.09001 * 109.04814 * 163.34873 * 29 28 7 55 55 H 1.09007 * 109.04182 * 44.47133 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4831 1.7568 0.0000 4 6 2.4915 -0.8882 1.5430 5 6 1.7983 -2.2138 1.6349 6 6 2.4536 -3.3398 0.8073 7 7 2.8527 -3.0358 -0.5756 8 6 4.0677 -3.4434 -0.9927 9 8 4.8996 -3.8031 -0.1823 10 6 4.3889 -3.4533 -2.4346 11 6 4.0984 -2.3370 -3.2230 12 6 4.4020 -2.3456 -4.5657 13 6 4.9907 -3.4719 -5.1411 14 6 5.3124 -3.4819 -6.5885 15 6 5.9055 -4.6038 -7.1657 16 6 6.1988 -4.6090 -8.5141 17 6 5.9146 -3.5000 -9.2908 18 6 6.2431 -3.5096 -10.7616 19 8 7.2478 -2.5300 -11.0317 20 14 6.8727 -5.1947 -11.2463 21 1 5.8286 -6.2127 -10.9656 22 1 7.1958 -5.2043 -12.6957 23 1 8.0948 -5.5104 -10.4641 24 6 5.3306 -2.3821 -8.7225 25 6 5.0286 -2.3673 -7.3761 26 6 5.2763 -4.5890 -4.3559 27 6 4.9780 -4.5808 -3.0120 28 6 2.0222 -2.3329 -1.4999 29 6 2.4633 -0.8476 -1.4748 30 1 -0.3633 0.5150 0.8894 31 1 -0.3634 0.5127 -0.8906 32 1 -0.3633 -1.0277 0.0005 33 1 3.5731 1.7574 0.0005 34 1 2.1205 2.2700 -0.8907 35 1 2.1184 2.2708 0.8893 36 1 3.5681 -1.0405 1.4670 37 1 2.2658 -0.2929 2.4277 38 1 1.7768 -2.5202 2.6807 39 1 0.7703 -2.0899 1.2943 40 1 1.7572 -4.1777 0.7757 41 1 3.3422 -3.6714 1.3445 42 1 3.6394 -1.4663 -2.7784 43 1 4.1807 -1.4816 -5.1747 44 1 6.1315 -5.4685 -6.5594 45 1 6.6549 -5.4789 -8.9632 46 1 5.3460 -3.2779 -11.3357 47 1 8.0759 -2.6736 -10.5534 48 1 5.1105 -1.5194 -9.3338 49 1 4.5730 -1.4939 -6.9334 50 1 5.7316 -5.4606 -4.8024 51 1 5.1988 -5.4458 -2.4043 52 1 0.9781 -2.4150 -1.1977 53 1 2.1514 -2.7415 -2.5021 54 1 2.0707 -0.3448 -2.3586 55 1 3.5522 -0.7996 -1.4943 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915400_13158362.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 18:15:08 Heat of formation + Delta-G solvation = -24.795167 kcal Electronic energy + Delta-G solvation = -32839.975343 eV Core-core repulsion = 28738.058811 eV Total energy + Delta-G solvation = -4101.916533 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 383.183 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.90682 -40.80509 -39.31905 -37.72946 -37.52190 -34.92449 -33.70621 -32.64621 -31.86574 -31.16500 -30.77879 -28.97068 -28.32573 -27.72007 -26.56994 -24.83759 -24.49253 -24.11154 -22.67993 -22.38061 -21.60150 -20.18064 -18.86684 -18.39544 -18.09894 -17.42037 -17.05226 -16.86440 -16.32516 -16.04672 -16.01738 -15.71081 -15.37063 -15.15862 -15.04070 -14.97534 -14.77900 -14.72384 -14.41906 -14.21515 -14.14074 -13.91739 -13.73052 -13.63263 -13.41735 -13.37290 -13.22565 -13.10758 -13.04264 -12.91724 -12.68969 -12.63120 -12.47609 -12.25514 -12.19391 -12.01530 -11.83884 -11.68121 -11.49434 -11.07884 -10.76155 -10.67458 -10.46866 -10.37059 -10.19226 -10.00725 -9.95744 -9.66762 -9.05082 -0.60907 0.35139 0.39417 0.57224 1.17812 1.44147 1.50986 1.54436 1.86613 1.90811 1.94045 2.00478 2.05588 2.51545 2.74297 2.97996 3.37698 3.49933 3.59764 3.65528 3.77583 3.88048 3.88930 4.00317 4.04492 4.11232 4.14303 4.28000 4.31095 4.34368 4.37093 4.42114 4.54520 4.59003 4.67040 4.68833 4.72149 4.81876 4.83679 4.90063 4.90918 4.92394 4.93647 4.94458 4.97836 4.99928 5.08494 5.14565 5.22334 5.23702 5.26073 5.30791 5.40590 5.50248 5.52861 5.60225 5.63313 5.66570 5.76373 5.81855 5.93862 6.27535 6.69047 7.00164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.456 4.456 2 Si 1.091 2.909 3 C -0.469 4.469 4 C -0.425 4.425 5 C -0.113 4.113 6 C 0.101 3.899 7 N -0.588 5.588 8 C 0.553 3.447 9 O -0.580 6.580 10 C -0.145 4.145 11 C -0.113 4.113 12 C -0.117 4.117 13 C -0.029 4.029 14 C -0.058 4.058 15 C -0.111 4.111 16 C -0.133 4.133 17 C -0.119 4.119 18 C -0.078 4.078 19 O -0.552 6.552 20 Si 0.978 3.022 21 H -0.258 1.258 22 H -0.277 1.277 23 H -0.254 1.254 24 C -0.096 4.096 25 C -0.108 4.108 26 C -0.121 4.121 27 C -0.081 4.081 28 C 0.106 3.894 29 C -0.482 4.482 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.052 0.948 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.061 0.939 42 H 0.183 0.817 43 H 0.156 0.844 44 H 0.141 0.859 45 H 0.131 0.869 46 H 0.126 0.874 47 H 0.389 0.611 48 H 0.140 0.860 49 H 0.148 0.852 50 H 0.145 0.855 51 H 0.124 0.876 52 H 0.109 0.891 53 H 0.093 0.907 54 H 0.123 0.877 55 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.426 2.436 -2.515 6.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.564 4.564 2 Si 1.280 2.720 3 C -0.575 4.575 4 C -0.508 4.508 5 C -0.151 4.151 6 C -0.021 4.021 7 N -0.318 5.318 8 C 0.343 3.657 9 O -0.461 6.461 10 C -0.148 4.148 11 C -0.130 4.130 12 C -0.135 4.135 13 C -0.030 4.030 14 C -0.058 4.058 15 C -0.128 4.128 16 C -0.151 4.151 17 C -0.120 4.120 18 C -0.188 4.188 19 O -0.359 6.359 20 Si 0.803 3.197 21 H -0.182 1.182 22 H -0.202 1.202 23 H -0.178 1.178 24 C -0.114 4.114 25 C -0.125 4.125 26 C -0.139 4.139 27 C -0.099 4.099 28 C -0.017 4.017 29 C -0.567 4.567 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.080 0.920 42 H 0.199 0.801 43 H 0.174 0.826 44 H 0.158 0.842 45 H 0.148 0.852 46 H 0.144 0.856 47 H 0.238 0.762 48 H 0.157 0.843 49 H 0.166 0.834 50 H 0.163 0.837 51 H 0.142 0.858 52 H 0.127 0.873 53 H 0.111 0.889 54 H 0.142 0.858 55 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.179 1.634 -2.672 6.052 hybrid contribution 0.771 -0.147 0.809 1.127 sum -4.408 1.487 -1.863 5.011 Atomic orbital electron populations 1.26278 1.20397 1.04879 1.04827 0.77674 0.66233 0.64101 0.63950 1.26363 1.05877 1.20648 1.04635 1.26002 1.03997 1.03391 1.17396 1.20995 1.00312 0.93860 0.99922 1.21785 1.00798 0.98418 0.81106 1.47048 1.15833 1.56178 1.12722 1.18833 0.81988 0.76336 0.88558 1.90767 1.48421 1.50461 1.56429 1.19937 1.04703 0.97508 0.92628 1.22763 0.97258 0.99111 0.93839 1.21509 0.98561 0.98381 0.95031 1.19135 0.97252 0.94450 0.92120 1.18929 0.99825 0.95110 0.91899 1.21418 0.98048 0.98385 0.94969 1.21157 1.01153 0.98372 0.94427 1.20537 1.00015 0.94829 0.96590 1.24988 0.95981 1.04199 0.93663 1.86491 1.26480 1.51948 1.70953 0.85274 0.80452 0.74919 0.79033 1.18238 1.20243 1.17758 1.21144 0.97202 0.98116 0.94903 1.21554 0.99152 0.98133 0.93672 1.21319 1.00604 0.99034 0.92923 1.21137 0.96070 0.97484 0.95255 1.21403 0.96015 0.90188 0.94111 1.27156 1.06749 1.02929 1.19827 0.91459 0.90437 0.90536 0.92160 0.90620 0.91537 0.92895 0.90337 0.90697 0.89847 0.90623 0.92002 0.80055 0.82610 0.84179 0.85193 0.85594 0.76247 0.84254 0.83410 0.83735 0.85789 0.87319 0.88860 0.85846 0.89791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 3.62 8.35 113.37 0.95 4.57 16 2 Si 1.09 -8.34 10.48 68.60 0.72 -7.62 16 3 C -0.47 2.01 8.65 113.37 0.98 2.99 16 4 C -0.43 0.88 4.83 70.98 0.34 1.22 16 5 C -0.11 0.31 5.32 30.05 0.16 0.47 16 6 C 0.10 0.12 6.00 86.72 0.52 0.64 16 7 N -0.59 -0.80 2.45 -826.26 -2.02 -2.82 16 8 C 0.55 4.49 6.74 86.75 0.58 5.07 16 9 O -0.58 -9.88 16.22 -3.95 -0.06 -9.95 16 10 C -0.14 -0.68 5.11 -20.06 -0.10 -0.79 16 11 C -0.11 0.07 7.28 22.49 0.16 0.23 16 12 C -0.12 0.20 9.41 22.44 0.21 0.42 16 13 C -0.03 -0.02 5.88 -20.00 -0.12 -0.14 16 14 C -0.06 -0.02 5.88 -20.05 -0.12 -0.14 16 15 C -0.11 0.01 9.43 22.49 0.21 0.22 16 16 C -0.13 0.05 8.65 22.24 0.19 0.24 16 17 C -0.12 0.08 5.36 -19.81 -0.11 -0.02 16 18 C -0.08 0.17 2.80 71.24 0.20 0.37 16 19 O -0.55 0.33 12.83 -148.98 -1.91 -1.58 16 20 Si 0.98 -1.66 25.13 68.60 1.72 0.07 16 21 H -0.26 0.12 7.11 99.48 0.71 0.82 16 22 H -0.28 -0.58 7.11 99.48 0.71 0.13 16 23 H -0.25 0.40 7.04 99.48 0.70 1.10 16 24 C -0.10 0.11 9.67 22.24 0.21 0.33 16 25 C -0.11 0.18 9.43 22.49 0.21 0.39 16 26 C -0.12 -0.21 9.41 22.44 0.21 0.00 16 27 C -0.08 -0.38 9.70 22.49 0.22 -0.17 16 28 C 0.11 -0.57 5.08 87.74 0.45 -0.12 16 29 C -0.48 3.70 2.68 72.65 0.19 3.90 16 30 H 0.07 -0.44 7.96 -2.38 -0.02 -0.46 16 31 H 0.08 -0.67 7.96 -2.39 -0.02 -0.69 16 32 H 0.08 -0.68 6.53 -2.39 -0.02 -0.70 16 33 H 0.06 -0.15 7.96 -2.38 -0.02 -0.17 16 34 H 0.07 -0.41 7.96 -2.39 -0.02 -0.43 16 35 H 0.07 -0.23 7.96 -2.39 -0.02 -0.24 16 36 H 0.05 0.15 7.90 -2.39 -0.02 0.13 16 37 H 0.08 -0.21 7.99 -2.39 -0.02 -0.23 16 38 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 39 H 0.08 -0.59 5.94 -2.39 -0.01 -0.60 16 40 H 0.08 -0.11 8.14 -2.39 -0.02 -0.13 16 41 H 0.06 0.45 6.70 -2.39 -0.02 0.44 16 42 H 0.18 -0.91 2.70 -2.91 -0.01 -0.92 16 43 H 0.16 -1.12 6.19 -2.91 -0.02 -1.14 16 44 H 0.14 -0.45 6.19 -2.91 -0.02 -0.47 16 45 H 0.13 -0.35 4.84 -2.91 -0.01 -0.36 16 46 H 0.13 -0.50 7.96 -2.39 -0.02 -0.52 16 47 H 0.39 -2.55 8.70 -74.05 -0.64 -3.19 16 48 H 0.14 -0.46 8.06 -2.91 -0.02 -0.48 16 49 H 0.15 -0.93 6.19 -2.91 -0.02 -0.95 16 50 H 0.15 -0.28 6.19 -2.91 -0.02 -0.30 16 51 H 0.12 0.64 8.06 -2.91 -0.02 0.62 16 52 H 0.11 -1.05 7.14 -2.39 -0.02 -1.06 16 53 H 0.09 -0.52 5.41 -2.39 -0.01 -0.53 16 54 H 0.12 -1.57 7.81 -2.39 -0.02 -1.59 16 55 H 0.08 -0.41 5.75 -2.38 -0.01 -0.43 16 Total: 0.00 -19.81 416.35 5.04 -14.77 By element: Atomic # 1 Polarization: -13.58 SS G_CDS: 1.03 Total: -12.55 kcal Atomic # 6 Polarization: 14.11 SS G_CDS: 5.57 Total: 19.68 kcal Atomic # 7 Polarization: -0.80 SS G_CDS: -2.02 Total: -2.82 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: -1.98 Total: -11.53 kcal Atomic # 14 Polarization: -10.00 SS G_CDS: 2.44 Total: -7.55 kcal Total: -19.81 5.04 -14.77 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915400_13158362.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.022 kcal (2) G-P(sol) polarization free energy of solvation -19.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds