Wall clock time and date at job start Thu Mar 4 2021 18:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86305 * 1 3 3 C 1.86298 * 109.00290 * 2 1 4 4 C 1.86978 * 109.01858 * 241.16999 * 2 1 3 5 5 C 1.54095 * 109.19683 * 199.18126 * 4 2 1 6 6 C 1.52938 * 108.12289 * 321.33473 * 5 4 2 7 7 N 1.45483 * 105.50249 * 102.39910 * 6 5 4 8 8 C 1.34778 * 116.96985 * 81.13506 * 7 6 5 9 9 O 1.21638 * 120.00376 * 184.78371 * 8 7 6 10 10 C 1.47067 * 119.99506 * 4.78621 * 8 7 6 11 11 C 1.35866 * 125.42123 * 164.94460 * 10 8 7 12 12 C 1.41590 * 107.72144 * 179.97438 * 11 10 8 13 13 C 1.40067 * 133.37620 * 180.02562 * 12 11 10 14 14 C 1.36475 * 119.82868 * 179.97438 * 13 12 11 15 15 C 1.38900 * 120.61368 * 0.25839 * 14 13 12 16 16 C 1.50703 * 119.67224 * 179.74471 * 15 14 13 17 17 O 1.42902 * 109.46735 * 244.99647 * 16 15 14 18 18 Si 1.86292 * 109.47355 * 4.99864 * 16 15 14 19 19 H 1.48500 * 109.47261 * 60.00042 * 18 16 15 20 20 H 1.48501 * 109.47194 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47048 * 299.99902 * 18 16 15 22 22 C 1.37714 * 120.65030 * 359.49700 * 15 14 13 23 23 C 1.39183 * 119.80490 * 0.47591 * 22 15 14 24 24 N 1.37492 * 133.18575 * 179.74998 * 23 22 15 25 25 C 1.42436 * 126.06704 * 260.85419 * 7 6 5 26 26 C 1.55250 * 107.47507 * 64.51491 * 25 7 6 27 27 H 1.09002 * 109.47035 * 301.08999 * 1 2 3 28 28 H 1.08997 * 109.47150 * 61.09839 * 1 2 3 29 29 H 1.09002 * 109.46853 * 181.09178 * 1 2 3 30 30 H 1.09006 * 109.46562 * 159.48578 * 3 2 1 31 31 H 1.09000 * 109.47417 * 279.48527 * 3 2 1 32 32 H 1.08996 * 109.47371 * 39.49148 * 3 2 1 33 33 H 1.08999 * 109.51909 * 319.10152 * 4 2 1 34 34 H 1.09004 * 109.51361 * 79.21226 * 4 2 1 35 35 H 1.08994 * 109.73630 * 81.05341 * 5 4 2 36 36 H 1.08993 * 109.73578 * 201.70442 * 5 4 2 37 37 H 1.08993 * 110.18148 * 343.49633 * 6 5 4 38 38 H 1.08994 * 110.45272 * 221.43849 * 6 5 4 39 39 H 1.07997 * 126.13814 * 359.97389 * 11 10 8 40 40 H 1.07995 * 120.08517 * 0.02562 * 13 12 11 41 41 H 1.07998 * 119.69382 * 179.97438 * 14 13 12 42 42 H 1.08999 * 109.47189 * 124.99903 * 16 15 14 43 43 H 0.96690 * 114.00119 * 60.00480 * 17 16 15 44 44 H 1.08002 * 120.09606 * 180.26029 * 22 15 14 45 45 H 0.96996 * 125.60160 * 0.03857 * 24 23 22 46 46 H 1.08992 * 109.85807 * 184.01098 * 25 7 6 47 47 H 1.08998 * 109.85311 * 304.95919 * 25 7 6 48 48 H 1.08999 * 109.51232 * 57.37308 * 26 25 7 49 49 H 1.08998 * 109.51352 * 177.52533 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4697 1.7615 0.0000 4 6 2.4724 -0.8524 -1.5486 5 6 3.9369 -1.2863 -1.3453 6 6 4.6551 -0.1854 -0.5635 7 7 4.7483 -0.6763 0.8028 8 6 5.7456 -1.5410 1.0750 9 8 5.8232 -2.0532 2.1755 10 6 6.7401 -1.8652 0.0412 11 6 7.9334 -2.4767 0.2607 12 6 8.5884 -2.6044 -0.9881 13 6 9.8214 -3.1433 -1.3769 14 6 10.1875 -3.1214 -2.6915 15 6 9.3505 -2.5641 -3.6497 16 6 9.7785 -2.5461 -5.0945 17 8 9.9556 -1.1940 -5.5219 18 14 11.3853 -3.4709 -5.2779 19 1 11.2012 -4.8759 -4.8337 20 1 11.8074 -3.4525 -6.7015 21 1 12.4284 -2.8208 -4.4444 22 6 8.1312 -2.0325 -3.2931 23 6 7.7352 -2.0435 -1.9588 24 7 6.6099 -1.5965 -1.3075 25 6 3.8869 -0.3238 1.8811 26 6 2.4671 -0.8469 1.5338 27 1 -0.3633 0.5307 0.8801 28 1 -0.3633 0.4967 -0.8996 29 1 -0.3633 -1.0275 0.0196 30 1 3.4981 1.7915 0.3602 31 1 2.4279 2.1602 -1.0136 32 1 1.8382 2.3632 0.6535 33 1 1.8569 -1.7297 -1.7476 34 1 2.4092 -0.1644 -2.3918 35 1 3.9697 -2.2194 -0.7830 36 1 4.4181 -1.4231 -2.3137 37 1 4.0746 0.7366 -0.5930 38 1 5.6518 -0.0169 -0.9712 39 1 8.3139 -2.8063 1.2162 40 1 10.4803 -3.5757 -0.6386 41 1 11.1389 -3.5371 -2.9888 42 1 9.0129 -3.0232 -5.7063 43 1 10.6238 -0.7073 -5.0204 44 1 7.4856 -1.6052 -4.0461 45 1 5.8493 -1.1643 -1.7264 46 1 4.2377 -0.7886 2.8024 47 1 3.8649 0.7597 1.9983 48 1 2.5070 -1.9229 1.3639 49 1 1.7882 -0.6329 2.3592 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915400_13158378.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 18:15:25 Heat of formation + Delta-G solvation = 18.696761 kcal Electronic energy + Delta-G solvation = -29117.949868 eV Core-core repulsion = 25364.483276 eV Total energy + Delta-G solvation = -3753.466592 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 346.163 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -43.17836 -41.26140 -39.02149 -38.31505 -36.88737 -34.47310 -33.21748 -32.13445 -30.64501 -30.46404 -29.24998 -28.76999 -27.07457 -26.89151 -24.90974 -23.71506 -22.90948 -22.28537 -21.88742 -20.82675 -18.84637 -18.70673 -18.14014 -17.38852 -17.01283 -16.69105 -16.21684 -16.01335 -15.69953 -15.52656 -15.23710 -15.08201 -14.91464 -14.83258 -14.70147 -14.51369 -14.30951 -14.12224 -13.77291 -13.66602 -13.60429 -13.20458 -13.19288 -13.00346 -12.85224 -12.70467 -12.53812 -12.49065 -12.13106 -12.09201 -11.99293 -11.98201 -11.47331 -11.31944 -10.96168 -10.81387 -10.55626 -10.51970 -10.38212 -9.85198 -9.33300 -8.82429 -0.38408 0.50621 0.90847 1.23122 1.51957 1.59039 1.67216 1.83228 1.84956 1.86277 1.94112 1.98882 2.13847 2.61677 2.75720 3.17338 3.53898 3.55586 3.70766 3.72567 3.74901 3.99148 4.05916 4.11341 4.22230 4.26299 4.30414 4.35078 4.45964 4.47017 4.53334 4.64346 4.69670 4.71657 4.75007 4.79270 4.80791 4.86336 4.88705 4.89208 4.97679 5.09807 5.28201 5.32483 5.39252 5.40329 5.49178 5.52702 5.57266 5.57634 5.63745 5.94339 6.02884 6.31581 6.74853 6.84818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.466 4.466 2 Si 1.067 2.933 3 C -0.472 4.472 4 C -0.416 4.416 5 C -0.144 4.144 6 C 0.032 3.968 7 N -0.587 5.587 8 C 0.569 3.431 9 O -0.559 6.559 10 C 0.009 3.991 11 C -0.121 4.121 12 C -0.134 4.134 13 C -0.061 4.061 14 C -0.159 4.159 15 C -0.090 4.090 16 C -0.075 4.075 17 O -0.551 6.551 18 Si 0.983 3.017 19 H -0.260 1.260 20 H -0.278 1.278 21 H -0.252 1.252 22 C -0.103 4.103 23 C 0.098 3.902 24 N -0.574 5.574 25 C 0.109 3.891 26 C -0.446 4.446 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.063 0.937 36 H 0.085 0.915 37 H 0.148 0.852 38 H 0.103 0.897 39 H 0.153 0.847 40 H 0.142 0.858 41 H 0.134 0.866 42 H 0.128 0.872 43 H 0.389 0.611 44 H 0.143 0.857 45 H 0.437 0.563 46 H 0.080 0.920 47 H 0.098 0.902 48 H 0.064 0.936 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.139 3.756 -4.036 5.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.572 4.572 2 Si 1.258 2.742 3 C -0.578 4.578 4 C -0.501 4.501 5 C -0.182 4.182 6 C -0.090 4.090 7 N -0.317 5.317 8 C 0.358 3.642 9 O -0.438 6.438 10 C -0.101 4.101 11 C -0.148 4.148 12 C -0.138 4.138 13 C -0.079 4.079 14 C -0.178 4.178 15 C -0.092 4.092 16 C -0.185 4.185 17 O -0.358 6.358 18 Si 0.808 3.192 19 H -0.184 1.184 20 H -0.204 1.204 21 H -0.175 1.175 22 C -0.124 4.124 23 C -0.012 4.012 24 N -0.194 5.194 25 C -0.013 4.013 26 C -0.530 4.530 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.118 0.882 35 H 0.082 0.918 36 H 0.103 0.897 37 H 0.165 0.835 38 H 0.121 0.879 39 H 0.170 0.830 40 H 0.160 0.840 41 H 0.152 0.848 42 H 0.145 0.855 43 H 0.238 0.762 44 H 0.161 0.839 45 H 0.293 0.707 46 H 0.098 0.902 47 H 0.116 0.884 48 H 0.083 0.917 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.047 2.993 -3.968 5.375 hybrid contribution -0.382 0.139 0.700 0.809 sum -2.429 3.132 -3.268 5.137 Atomic orbital electron populations 1.26323 1.21965 1.04215 1.04690 0.78352 0.65339 0.65982 0.64536 1.26711 1.06068 1.19174 1.05872 1.26616 0.98087 1.08541 1.16845 1.22251 0.97643 0.98020 1.00335 1.23247 1.04272 1.01275 0.80185 1.46864 1.29357 1.44112 1.11393 1.17715 0.80920 0.79504 0.86037 1.90821 1.75162 1.53380 1.24417 1.19976 0.98152 1.08152 0.83775 1.21070 0.93613 1.01748 0.98376 1.18422 0.96926 1.05580 0.92874 1.20576 0.94025 0.96789 0.96516 1.20720 1.00660 1.03313 0.93093 1.20155 0.94163 0.98625 0.96253 1.24986 1.11439 0.89806 0.92308 1.86484 1.64243 1.23350 1.61692 0.85197 0.75939 0.78986 0.79045 1.18393 1.20379 1.17538 1.20034 0.97407 1.03114 0.91813 1.18658 0.88494 0.99856 0.94237 1.43830 1.18453 1.51857 1.05211 1.21098 0.89067 1.01455 0.89703 1.27222 1.00077 1.07543 1.18149 0.91255 0.90823 0.91806 0.90408 0.89628 0.90454 0.90312 0.88231 0.91799 0.89718 0.83516 0.87945 0.82974 0.84015 0.84841 0.85457 0.76159 0.83927 0.70730 0.90151 0.88439 0.91735 0.88837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 2.40 8.65 113.37 0.98 3.38 16 2 Si 1.07 -8.88 10.05 68.60 0.69 -8.19 16 3 C -0.47 4.19 7.38 113.37 0.84 5.03 16 4 C -0.42 3.31 5.09 72.35 0.37 3.68 16 5 C -0.14 0.83 4.41 30.94 0.14 0.97 16 6 C 0.03 -0.18 4.96 86.55 0.43 0.25 16 7 N -0.59 -0.23 2.18 -834.07 -1.82 -2.05 16 8 C 0.57 4.23 6.94 86.56 0.60 4.83 16 9 O -0.56 -8.42 15.89 -4.15 -0.07 -8.49 16 10 C 0.01 0.05 6.38 39.92 0.25 0.31 16 11 C -0.12 -0.85 10.57 22.55 0.24 -0.61 16 12 C -0.13 -0.70 6.16 -21.36 -0.13 -0.84 16 13 C -0.06 -0.15 10.06 22.30 0.22 0.08 16 14 C -0.16 -0.10 8.59 22.02 0.19 0.09 16 15 C -0.09 0.02 5.35 -19.83 -0.11 -0.09 16 16 C -0.07 0.20 2.79 71.24 0.20 0.40 16 17 O -0.55 0.92 12.83 -148.98 -1.91 -0.99 16 18 Si 0.98 -2.09 25.11 68.60 1.72 -0.36 16 19 H -0.26 0.12 7.11 99.48 0.71 0.83 16 20 H -0.28 -0.43 7.11 99.48 0.71 0.28 16 21 H -0.25 0.54 7.03 99.48 0.70 1.24 16 22 C -0.10 -0.03 9.69 22.37 0.22 0.19 16 23 C 0.10 0.29 7.25 39.13 0.28 0.57 16 24 N -0.57 -0.42 4.57 -177.18 -0.81 -1.23 16 25 C 0.11 -0.01 5.82 87.90 0.51 0.50 16 26 C -0.45 1.28 4.96 72.75 0.36 1.64 16 27 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 28 H 0.07 -0.41 7.96 -2.39 -0.02 -0.43 16 29 H 0.06 -0.24 7.96 -2.39 -0.02 -0.26 16 30 H 0.08 -0.70 4.91 -2.38 -0.01 -0.71 16 31 H 0.08 -0.89 7.96 -2.39 -0.02 -0.91 16 32 H 0.08 -0.63 7.96 -2.39 -0.02 -0.65 16 33 H 0.08 -0.53 7.97 -2.39 -0.02 -0.55 16 34 H 0.10 -1.08 7.97 -2.38 -0.02 -1.10 16 35 H 0.06 -0.08 7.39 -2.39 -0.02 -0.10 16 36 H 0.08 -0.71 6.71 -2.39 -0.02 -0.73 16 37 H 0.15 -1.45 2.84 -2.39 -0.01 -1.46 16 38 H 0.10 -0.63 4.88 -2.39 -0.01 -0.65 16 39 H 0.15 1.00 8.06 -2.91 -0.02 0.98 16 40 H 0.14 -0.15 8.06 -2.91 -0.02 -0.17 16 41 H 0.13 -0.31 4.80 -2.91 -0.01 -0.32 16 42 H 0.13 -0.60 7.96 -2.39 -0.02 -0.62 16 43 H 0.39 -2.96 8.70 -74.06 -0.64 -3.61 16 44 H 0.14 -0.46 8.06 -2.91 -0.02 -0.48 16 45 H 0.44 -1.92 2.70 -92.71 -0.25 -2.17 16 46 H 0.08 0.43 6.57 -2.39 -0.02 0.42 16 47 H 0.10 -0.46 6.55 -2.39 -0.02 -0.48 16 48 H 0.06 0.04 7.96 -2.39 -0.02 0.02 16 49 H 0.09 -0.37 7.96 -2.39 -0.02 -0.39 16 Total: 0.00 -17.56 366.79 4.25 -13.31 By element: Atomic # 1 Polarization: -13.21 SS G_CDS: 0.85 Total: -12.36 kcal Atomic # 6 Polarization: 14.78 SS G_CDS: 5.59 Total: 20.37 kcal Atomic # 7 Polarization: -0.65 SS G_CDS: -2.63 Total: -3.28 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: -1.98 Total: -9.48 kcal Atomic # 14 Polarization: -10.96 SS G_CDS: 2.41 Total: -8.55 kcal Total: -17.56 4.25 -13.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915400_13158378.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.002 kcal (2) G-P(sol) polarization free energy of solvation -17.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds