Wall clock time and date at job start Thu Mar 4 2021 18:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28467 * 124.88489 * 2 1 4 4 C 1.31806 * 110.07531 * 180.02562 * 3 2 1 5 5 C 1.47710 * 126.52100 * 179.97438 * 4 3 2 6 6 O 1.21579 * 120.00097 * 180.02562 * 5 4 3 7 7 N 1.34778 * 120.00118 * 0.03485 * 5 4 3 8 8 C 1.46267 * 122.81765 * 357.44136 * 7 5 4 9 9 C 1.45981 * 114.58046 * 79.19676 * 8 7 5 10 10 C 1.55340 * 108.91919 * 60.35705 * 9 8 7 11 11 Si 1.84157 * 109.12465 * 290.55241 * 10 9 8 12 12 C 1.86304 * 108.84552 * 207.39811 * 11 10 9 13 13 C 1.86300 * 108.84482 * 325.86041 * 11 10 9 14 14 C 1.88538 * 112.65861 * 86.57673 * 11 10 9 15 15 C 1.44478 * 122.82327 * 177.15505 * 7 5 4 16 16 C 1.41506 * 106.96248 * 0.02562 * 4 3 2 17 17 C 1.35036 * 124.88761 * 180.02562 * 2 1 3 18 18 C 1.50707 * 126.37935 * 359.70464 * 17 2 1 19 19 O 1.42901 * 109.47143 * 329.99333 * 18 17 2 20 20 Si 1.86298 * 109.46433 * 209.99861 * 18 17 2 21 21 H 1.48490 * 109.47497 * 60.00026 * 20 18 17 22 22 H 1.48506 * 109.46514 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47098 * 299.99445 * 20 18 17 24 24 H 1.09002 * 109.47198 * 269.95789 * 1 2 3 25 25 H 1.09000 * 109.46976 * 29.95319 * 1 2 3 26 26 H 1.08995 * 109.46989 * 149.95442 * 1 2 3 27 27 H 1.08996 * 108.46455 * 200.51690 * 8 7 5 28 28 H 1.09008 * 108.46673 * 318.03910 * 8 7 5 29 29 H 1.09000 * 109.56049 * 180.18775 * 9 8 7 30 30 H 1.09000 * 109.55720 * 300.41263 * 9 8 7 31 31 H 1.08992 * 109.53304 * 50.45141 * 10 9 8 32 32 H 1.09000 * 109.52727 * 170.59344 * 10 9 8 33 33 H 1.08994 * 109.47122 * 59.99868 * 12 11 10 34 34 H 1.08997 * 109.46966 * 180.02562 * 12 11 10 35 35 H 1.08997 * 109.46678 * 300.00016 * 12 11 10 36 36 H 1.09004 * 109.47015 * 36.75368 * 13 11 10 37 37 H 1.09002 * 109.46931 * 156.74645 * 13 11 10 38 38 H 1.08997 * 109.47694 * 276.75169 * 13 11 10 39 39 H 1.08999 * 110.08204 * 80.92546 * 14 11 10 40 40 H 1.09007 * 110.07729 * 202.52839 * 14 11 10 41 41 H 1.09001 * 109.89917 * 50.58999 * 15 7 5 42 42 H 1.08998 * 109.89813 * 171.70710 * 15 7 5 43 43 H 1.08003 * 127.24939 * 180.02562 * 16 4 3 44 44 H 1.08994 * 109.47192 * 90.00093 * 18 17 2 45 45 H 0.96693 * 113.99933 * 300.00893 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1997 1.0538 0.0000 4 6 3.4740 0.7169 -0.0006 5 6 4.6273 1.6398 -0.0013 6 8 5.7598 1.1976 -0.0022 7 7 4.4241 2.9722 -0.0007 8 6 3.0906 3.5708 -0.0542 9 6 2.3789 3.5832 1.2203 10 6 3.2022 4.4061 2.2489 11 14 4.7346 3.4783 2.6758 12 6 5.2698 3.9586 4.3945 13 6 4.3599 1.6535 2.6512 14 6 6.1497 3.8230 1.4786 15 6 5.5049 3.9292 0.0589 16 6 3.5272 -0.6971 -0.0015 17 6 2.2373 -1.1077 -0.0005 18 6 1.7534 -2.5349 0.0051 19 8 0.4983 -2.6096 0.6844 20 14 2.9983 -3.6091 0.8808 21 1 3.1633 -3.1369 2.2789 22 1 2.5217 -5.0156 0.8858 23 1 4.3025 -3.5315 0.1749 24 1 -0.3634 -0.0008 1.0277 25 1 -0.3633 0.8904 -0.5131 26 1 -0.3633 -0.8895 -0.5145 27 1 3.1872 4.5981 -0.4055 28 1 2.4916 3.0155 -0.7761 29 1 1.3990 4.0415 1.0866 30 1 2.2580 2.5615 1.5806 31 1 3.4686 5.3698 1.8151 32 1 2.6077 4.5635 3.1489 33 1 4.4795 3.7118 5.1034 34 1 6.1772 3.4151 4.6576 35 1 5.4660 5.0302 4.4277 36 1 3.6581 1.4376 1.8455 37 1 5.2820 1.0954 2.4891 38 1 3.9202 1.3599 3.6043 39 1 6.6396 4.7614 1.7385 40 1 6.8691 3.0044 1.5039 41 1 6.2513 3.6936 -0.6997 42 1 5.1183 4.9358 -0.0999 43 1 4.4108 -1.3181 -0.0018 44 1 1.6323 -2.8815 -1.0211 45 1 0.5313 -2.3158 1.6050 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915400_13259642.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 18:15:58 Heat of formation + Delta-G solvation = 9.500991 kcal Electronic energy + Delta-G solvation = -26265.860967 eV Core-core repulsion = 22831.248127 eV Total energy + Delta-G solvation = -3434.612840 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 311.158 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.94575 -41.22113 -38.03418 -37.93794 -34.58250 -33.96407 -32.71995 -31.06833 -29.60547 -28.55749 -28.04263 -26.96591 -26.78487 -25.00689 -23.00919 -22.46578 -21.95576 -19.90153 -18.81103 -17.85522 -17.46026 -17.32411 -17.00867 -16.50498 -15.92118 -15.80481 -15.41643 -15.18658 -15.13055 -14.76545 -14.60739 -14.38037 -13.98877 -13.91105 -13.77911 -13.48048 -13.40050 -13.38646 -13.23856 -13.04327 -12.64219 -12.56504 -12.45490 -12.25827 -12.18528 -12.07700 -11.69204 -11.58071 -11.20635 -10.88262 -10.77451 -10.44389 -10.43119 -10.07554 -9.91163 -9.67114 0.45963 0.75264 1.13827 1.44131 1.46334 1.61372 1.77690 1.91514 1.92666 2.00474 2.07379 2.26824 2.73711 3.14933 3.28567 3.36333 3.82744 4.01054 4.21249 4.27567 4.34773 4.41860 4.44339 4.48363 4.53562 4.60036 4.65455 4.66160 4.68779 4.72836 4.75973 4.78107 4.79747 4.86745 4.97349 5.02490 5.13165 5.22426 5.33708 5.36853 5.46645 5.50424 5.54954 5.71472 5.75631 6.34768 6.47874 6.78691 7.09115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.260 5.260 3 N -0.245 5.245 4 C -0.032 4.032 5 C 0.614 3.386 6 O -0.565 6.565 7 N -0.600 5.600 8 C 0.098 3.902 9 C -0.124 4.124 10 C -0.405 4.405 11 Si 1.038 2.962 12 C -0.459 4.459 13 C -0.487 4.487 14 C -0.433 4.433 15 C 0.115 3.885 16 C -0.212 4.212 17 C -0.008 4.008 18 C -0.038 4.038 19 O -0.539 6.539 20 Si 0.989 3.011 21 H -0.266 1.266 22 H -0.253 1.253 23 H -0.265 1.265 24 H 0.104 0.896 25 H 0.104 0.896 26 H 0.118 0.882 27 H 0.104 0.896 28 H 0.079 0.921 29 H 0.095 0.905 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.043 0.957 38 H 0.059 0.941 39 H 0.096 0.904 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.125 0.875 43 H 0.155 0.845 44 H 0.147 0.853 45 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.612 2.118 0.107 7.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.049 5.049 3 N -0.083 5.083 4 C -0.189 4.189 5 C 0.403 3.597 6 O -0.442 6.442 7 N -0.333 5.333 8 C -0.024 4.024 9 C -0.162 4.162 10 C -0.493 4.493 11 Si 1.229 2.771 12 C -0.565 4.565 13 C -0.591 4.591 14 C -0.519 4.519 15 C -0.008 4.008 16 C -0.240 4.240 17 C -0.133 4.133 18 C -0.150 4.150 19 O -0.345 6.345 20 Si 0.812 3.188 21 H -0.190 1.190 22 H -0.177 1.177 23 H -0.190 1.190 24 H 0.123 0.877 25 H 0.122 0.878 26 H 0.136 0.864 27 H 0.123 0.877 28 H 0.097 0.903 29 H 0.114 0.886 30 H 0.084 0.916 31 H 0.113 0.887 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.063 0.937 38 H 0.078 0.922 39 H 0.115 0.885 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.143 0.857 43 H 0.173 0.827 44 H 0.164 0.836 45 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -7.460 2.022 -0.090 7.729 hybrid contribution 1.017 -0.581 0.421 1.245 sum -6.442 1.441 0.331 6.610 Atomic orbital electron populations 1.22686 0.70227 1.06937 1.06379 1.45834 1.09142 1.01671 1.48246 1.73727 1.01983 1.13503 1.19056 1.21609 0.91397 0.93874 1.12051 1.16792 0.86418 0.81595 0.74878 1.90780 1.24140 1.77285 1.52041 1.47483 1.09758 1.04367 1.71689 1.20538 0.82191 1.00043 0.99625 1.20742 0.99716 1.01018 0.94732 1.26236 1.12697 1.06916 1.03439 0.78739 0.67432 0.65260 0.65626 1.26282 1.05325 1.05791 1.19132 1.27300 1.04273 1.23208 1.04332 1.27567 1.12829 1.05262 1.06213 1.21701 0.89167 0.92957 0.96929 1.21626 0.97482 0.94104 1.10831 1.22116 0.90492 0.92649 1.08075 1.24590 0.94199 0.91415 1.04814 1.86491 1.28949 1.88874 1.30180 0.85115 0.76483 0.78235 0.78933 1.19039 1.17659 1.18974 0.87718 0.87775 0.86364 0.87738 0.90272 0.88627 0.91607 0.88681 0.89767 0.91374 0.92420 0.90425 0.89800 0.93744 0.92158 0.88509 0.92544 0.92433 0.85701 0.82746 0.83576 0.75927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.68 10.12 127.77 1.29 0.61 16 2 N -0.26 0.23 3.70 -355.93 -1.32 -1.09 16 3 N -0.24 -0.74 6.96 -48.17 -0.34 -1.07 16 4 C -0.03 -0.26 4.56 42.46 0.19 -0.07 16 5 C 0.61 6.59 4.26 86.75 0.37 6.96 16 6 O -0.57 -10.16 15.94 -3.97 -0.06 -10.23 16 7 N -0.60 -2.38 1.62 -836.90 -1.35 -3.73 16 8 C 0.10 -0.17 4.42 84.27 0.37 0.20 16 9 C -0.12 0.35 5.08 29.24 0.15 0.50 16 10 C -0.40 1.49 4.72 72.79 0.34 1.84 16 11 Si 1.04 0.62 9.98 68.60 0.68 1.31 16 12 C -0.46 -0.69 8.65 113.37 0.98 0.29 16 13 C -0.49 -3.54 6.84 113.37 0.78 -2.77 16 14 C -0.43 -1.27 5.08 73.13 0.37 -0.90 16 15 C 0.11 0.20 5.70 87.90 0.50 0.70 16 16 C -0.21 -1.47 9.34 22.41 0.21 -1.26 16 17 C -0.01 0.00 6.18 41.40 0.26 0.25 16 18 C -0.04 0.18 2.87 71.24 0.20 0.38 16 19 O -0.54 3.83 10.42 -148.98 -1.55 2.27 16 20 Si 0.99 -1.37 26.62 68.60 1.83 0.46 16 21 H -0.27 -0.38 7.11 99.48 0.71 0.32 16 22 H -0.25 0.09 7.11 99.48 0.71 0.79 16 23 H -0.27 -0.57 6.87 99.48 0.68 0.11 16 24 H 0.10 -1.29 8.14 -2.39 -0.02 -1.31 16 25 H 0.10 -1.10 8.14 -2.39 -0.02 -1.12 16 26 H 0.12 -1.23 6.79 -2.39 -0.02 -1.24 16 27 H 0.10 -0.72 7.17 -2.39 -0.02 -0.74 16 28 H 0.08 -0.03 6.32 -2.38 -0.02 -0.04 16 29 H 0.10 -0.56 8.14 -2.39 -0.02 -0.58 16 30 H 0.07 0.04 4.24 -2.39 -0.01 0.03 16 31 H 0.09 -0.65 7.90 -2.39 -0.02 -0.67 16 32 H 0.08 -0.37 7.95 -2.39 -0.02 -0.39 16 33 H 0.07 0.08 7.96 -2.39 -0.02 0.06 16 34 H 0.06 0.20 7.96 -2.39 -0.02 0.18 16 35 H 0.08 -0.04 7.96 -2.39 -0.02 -0.06 16 36 H 0.08 0.60 1.80 -2.38 0.00 0.60 16 37 H 0.04 0.55 7.36 -2.39 -0.02 0.53 16 38 H 0.06 0.38 7.96 -2.39 -0.02 0.36 16 39 H 0.10 -0.09 8.00 -2.39 -0.02 -0.11 16 40 H 0.06 0.51 7.63 -2.38 -0.02 0.49 16 41 H 0.06 0.29 8.12 -2.39 -0.02 0.27 16 42 H 0.13 -0.71 7.17 -2.39 -0.02 -0.73 16 43 H 0.15 1.21 6.85 -2.91 -0.02 1.19 16 44 H 0.15 -1.11 7.96 -2.39 -0.02 -1.13 16 45 H 0.39 -4.75 8.70 -74.06 -0.64 -5.40 16 Total: 0.00 -18.91 334.39 5.00 -13.91 By element: Atomic # 1 Polarization: -9.66 SS G_CDS: 1.09 Total: -8.57 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: 6.02 Total: 6.73 kcal Atomic # 7 Polarization: -2.88 SS G_CDS: -3.01 Total: -5.89 kcal Atomic # 8 Polarization: -6.34 SS G_CDS: -1.62 Total: -7.95 kcal Atomic # 14 Polarization: -0.75 SS G_CDS: 2.51 Total: 1.77 kcal Total: -18.91 5.00 -13.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915400_13259642.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.415 kcal (2) G-P(sol) polarization free energy of solvation -18.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds