Wall clock time and date at job start Thu Mar 4 2021 18:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86296 * 1 3 3 C 1.86296 * 108.81856 * 2 1 4 4 C 1.84155 * 108.84362 * 118.48202 * 2 1 3 5 5 C 1.55337 * 109.12778 * 207.39401 * 4 2 1 6 6 C 1.45984 * 108.92168 * 290.55650 * 5 4 2 7 7 N 1.46266 * 114.57982 * 60.35316 * 6 5 4 8 8 C 1.34778 * 122.82088 * 79.19996 * 7 6 5 9 9 O 1.21581 * 120.00053 * 4.49360 * 8 7 6 10 10 C 1.47567 * 119.99582 * 184.49636 * 8 7 6 11 11 C 1.39425 * 120.12374 * 353.40266 * 10 8 7 12 12 C 1.39216 * 119.75385 * 180.02562 * 11 10 8 13 13 C 1.47814 * 119.99619 * 180.02562 * 12 11 10 14 14 C 1.35936 * 125.93191 * 179.97438 * 13 12 11 15 15 C 1.40963 * 106.74486 * 180.02562 * 14 13 12 16 16 C 1.34702 * 107.03125 * 359.97438 * 15 14 13 17 17 C 1.50705 * 125.66917 * 180.02562 * 16 15 14 18 18 O 1.42898 * 109.46774 * 300.00230 * 17 16 15 19 19 Si 1.86298 * 109.47276 * 180.02562 * 17 16 15 20 20 H 1.48502 * 109.47250 * 59.99832 * 19 17 16 21 21 H 1.48498 * 109.46912 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47088 * 299.99892 * 19 17 16 23 23 O 1.34345 * 108.66721 * 359.73723 * 16 15 14 24 24 C 1.39807 * 120.00392 * 0.02562 * 12 11 10 25 25 C 1.37807 * 120.24034 * 359.97438 * 24 12 11 26 26 C 1.38777 * 120.24710 * 0.29764 * 25 24 12 27 27 O 1.35653 * 120.00046 * 179.69969 * 26 25 24 28 28 C 1.44485 * 114.35639 * 259.46168 * 7 6 5 29 29 C 1.56292 * 107.52408 * 111.12064 * 28 7 6 30 30 H 1.09006 * 109.47375 * 301.51453 * 1 2 3 31 31 H 1.09001 * 109.46976 * 61.51934 * 1 2 3 32 32 H 1.09003 * 109.47040 * 181.51770 * 1 2 3 33 33 H 1.09006 * 109.47019 * 158.88912 * 3 2 1 34 34 H 1.08999 * 109.46941 * 278.88978 * 3 2 1 35 35 H 1.09005 * 109.47029 * 38.89502 * 3 2 1 36 36 H 1.09006 * 109.52921 * 87.49791 * 4 2 1 37 37 H 1.09006 * 109.58874 * 327.32022 * 4 2 1 38 38 H 1.08998 * 109.56966 * 170.71886 * 5 4 2 39 39 H 1.09004 * 109.65234 * 50.43428 * 5 4 2 40 40 H 1.09001 * 108.45715 * 299.02803 * 6 5 4 41 41 H 1.08998 * 108.33294 * 181.58213 * 6 5 4 42 42 H 1.07995 * 120.12152 * 0.04298 * 11 10 8 43 43 H 1.08007 * 126.62539 * 0.02562 * 14 13 12 44 44 H 1.08008 * 126.48829 * 179.97438 * 15 14 13 45 45 H 1.08993 * 109.47137 * 60.00008 * 17 16 15 46 46 H 0.96705 * 113.99931 * 299.99898 * 18 17 16 47 47 H 1.07996 * 119.87717 * 179.97438 * 24 12 11 48 48 H 1.08003 * 119.87804 * 180.02562 * 25 24 12 49 49 H 0.96701 * 114.00109 * 90.00213 * 27 26 25 50 50 H 1.08997 * 109.89590 * 230.32489 * 28 7 6 51 51 H 1.08998 * 109.89700 * 351.44606 * 28 7 6 52 52 H 1.08996 * 110.09307 * 204.82213 * 29 28 7 53 53 H 1.08998 * 110.23497 * 83.22315 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4639 1.7634 0.0000 4 6 2.4578 -0.8311 1.5319 5 6 3.8554 -0.2666 1.9074 6 6 4.8299 -0.7193 0.9192 7 7 4.5518 -0.2892 -0.4508 8 6 4.8375 0.9490 -0.9000 9 8 5.4223 1.7365 -0.1815 10 6 4.4405 1.3489 -2.2639 11 6 3.8944 0.4095 -3.1374 12 6 3.5230 0.7951 -4.4226 13 6 2.9430 -0.1964 -5.3529 14 6 2.5398 0.0469 -6.6281 15 6 2.0548 -1.1735 -7.1405 16 6 2.1851 -2.0913 -6.1632 17 6 1.7937 -3.5432 -6.2633 18 8 0.3954 -3.6415 -6.5407 19 14 2.1683 -4.3999 -4.6520 20 1 1.3995 -3.7543 -3.5577 21 1 1.7832 -5.8307 -4.7509 22 1 3.6213 -4.2978 -4.3631 23 8 2.7278 -1.4988 -5.0865 24 6 3.6987 2.1199 -4.8332 25 6 4.2385 3.0483 -3.9697 26 6 4.6174 2.6739 -2.6883 27 8 5.1539 3.5906 -1.8445 28 6 3.9395 -1.3013 -1.2805 29 6 2.4720 -0.8482 -1.5699 30 1 -0.3634 0.5372 0.8761 31 1 -0.3633 0.4901 -0.9033 32 1 -0.3633 -1.0273 0.0272 33 1 3.4886 1.7980 0.3702 34 1 2.4308 2.1585 -1.0153 35 1 1.8240 2.3653 0.6453 36 1 2.5330 -1.9046 1.3583 37 1 1.7577 -0.6418 2.3458 38 1 4.1419 -0.6284 2.8949 39 1 3.8211 0.8229 1.9136 40 1 4.8613 -1.8087 0.9394 41 1 5.8109 -0.3416 1.2072 42 1 3.7597 -0.6134 -2.8182 43 1 2.5828 0.9925 -7.1483 44 1 1.6544 -1.3410 -8.1295 45 1 2.3577 -4.0169 -7.0667 46 1 -0.1687 -3.2398 -5.8657 47 1 3.4103 2.4166 -5.8307 48 1 4.3712 4.0703 -4.2930 49 1 4.5017 4.0556 -1.3027 50 1 4.4857 -1.3916 -2.2194 51 1 3.9375 -2.2579 -0.7580 52 1 1.8496 -1.7148 -1.7925 53 1 2.4512 -0.1486 -2.4054 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915400_13259648.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 18:16:09 Heat of formation + Delta-G solvation = -14.787981 kcal Electronic energy + Delta-G solvation = -37130.810878 eV Core-core repulsion = 32675.727665 eV Total energy + Delta-G solvation = -4455.083213 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 389.166 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -43.68523 -42.43527 -40.08656 -38.58015 -37.90196 -37.44512 -35.40939 -34.05987 -32.77301 -32.24892 -31.04023 -29.90060 -29.26201 -28.40492 -27.32863 -26.30937 -25.13221 -24.42536 -23.54707 -22.79742 -22.34862 -21.34501 -20.50089 -19.36970 -18.89459 -18.24928 -17.85195 -17.49407 -17.36478 -17.04787 -16.84870 -16.45853 -16.15204 -15.75299 -15.68149 -15.50500 -15.07460 -14.85034 -14.83780 -14.47022 -14.08542 -13.99801 -13.94497 -13.84930 -13.81515 -13.71069 -13.62295 -13.37205 -13.28765 -13.09783 -13.04484 -12.82480 -12.71075 -12.36929 -12.31139 -12.16087 -12.12492 -11.95224 -11.79679 -11.44141 -11.01320 -10.88931 -10.78840 -10.62481 -10.57565 -10.48493 -10.35783 -9.93860 -9.71027 -8.81847 -0.54216 -0.15529 0.80233 1.10455 1.44119 1.48845 1.55385 1.69812 1.79281 1.83670 1.85814 1.94750 1.96338 1.97975 2.62162 2.68618 3.11307 3.24445 3.39170 3.50605 3.69953 3.88297 3.89080 3.98071 3.99407 4.04884 4.06655 4.23222 4.29832 4.39504 4.49708 4.52289 4.52972 4.61421 4.66840 4.68843 4.73954 4.75722 4.76684 4.78760 4.84603 4.85463 4.89545 4.92369 5.01870 5.06803 5.12014 5.18344 5.21737 5.33996 5.41520 5.48723 5.51914 5.53249 5.55822 5.60908 6.03781 6.29728 6.61648 6.66736 7.05545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.461 4.461 2 Si 1.050 2.950 3 C -0.492 4.492 4 C -0.413 4.413 5 C -0.131 4.131 6 C 0.102 3.898 7 N -0.606 5.606 8 C 0.580 3.420 9 O -0.553 6.553 10 C -0.184 4.184 11 C -0.104 4.104 12 C -0.057 4.057 13 C 0.026 3.974 14 C -0.193 4.193 15 C -0.179 4.179 16 C -0.057 4.057 17 C -0.038 4.038 18 O -0.540 6.540 19 Si 0.969 3.031 20 H -0.238 1.238 21 H -0.261 1.261 22 H -0.255 1.255 23 O -0.174 6.174 24 C -0.046 4.046 25 C -0.161 4.161 26 C 0.162 3.838 27 O -0.494 6.494 28 C 0.080 3.920 29 C -0.472 4.472 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.053 0.947 40 H 0.114 0.886 41 H 0.057 0.943 42 H 0.216 0.784 43 H 0.170 0.830 44 H 0.163 0.837 45 H 0.146 0.854 46 H 0.393 0.607 47 H 0.162 0.838 48 H 0.158 0.842 49 H 0.405 0.595 50 H 0.095 0.905 51 H 0.133 0.867 52 H 0.113 0.887 53 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.221 -4.517 -1.777 6.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.568 4.568 2 Si 1.241 2.759 3 C -0.596 4.596 4 C -0.500 4.500 5 C -0.169 4.169 6 C -0.020 4.020 7 N -0.339 5.339 8 C 0.372 3.628 9 O -0.432 6.432 10 C -0.188 4.188 11 C -0.120 4.120 12 C -0.058 4.058 13 C -0.023 4.023 14 C -0.212 4.212 15 C -0.198 4.198 16 C -0.107 4.107 17 C -0.149 4.149 18 O -0.348 6.348 19 Si 0.790 3.210 20 H -0.160 1.160 21 H -0.185 1.185 22 H -0.178 1.178 23 O -0.072 6.072 24 C -0.064 4.064 25 C -0.180 4.180 26 C 0.116 3.884 27 O -0.307 6.307 28 C -0.042 4.042 29 C -0.556 4.556 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.116 0.884 37 H 0.098 0.902 38 H 0.109 0.891 39 H 0.071 0.929 40 H 0.132 0.868 41 H 0.076 0.924 42 H 0.231 0.769 43 H 0.187 0.813 44 H 0.180 0.820 45 H 0.163 0.837 46 H 0.243 0.757 47 H 0.179 0.821 48 H 0.176 0.824 49 H 0.265 0.735 50 H 0.112 0.888 51 H 0.151 0.849 52 H 0.131 0.869 53 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.875 -5.110 -1.086 5.963 hybrid contribution -0.660 1.525 0.090 1.664 sum -3.535 -3.585 -0.997 5.133 Atomic orbital electron populations 1.26310 1.21874 1.04666 1.03935 0.78451 0.65387 0.65308 0.66773 1.27254 1.07127 1.21965 1.03260 1.26378 1.00393 1.08087 1.15163 1.20734 0.95257 1.01199 0.99711 1.20310 0.99092 1.01870 0.80703 1.47500 1.61509 1.11770 1.13109 1.17831 0.77444 0.81309 0.86197 1.90811 1.41973 1.51849 1.58589 1.20156 1.08000 0.95344 0.95298 1.23996 0.91729 1.04727 0.91579 1.17761 1.03728 0.91831 0.92457 1.20350 1.05120 0.81676 0.95200 1.22128 1.04207 1.00865 0.94027 1.21750 1.04543 0.92212 1.01288 1.23240 1.03814 0.97637 0.86032 1.24437 0.85959 0.89669 1.14791 1.86552 1.14327 1.81331 1.52557 0.85363 0.81377 0.79206 0.75048 1.16020 1.18461 1.17835 1.83900 1.63727 1.21065 1.38546 1.21414 0.94165 0.90257 1.00537 1.21505 1.01399 1.02090 0.92961 1.18911 0.91219 0.87761 0.90509 1.84722 1.36851 1.53771 1.55330 1.22424 0.92589 0.92701 0.96445 1.28533 1.00035 1.10073 1.16998 0.91822 0.91788 0.90455 0.90439 0.92494 0.92180 0.88388 0.90193 0.89121 0.92859 0.86750 0.92413 0.76877 0.81260 0.81972 0.83664 0.75720 0.82095 0.82409 0.73522 0.88794 0.84871 0.86887 0.87865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 0.95 8.65 113.37 0.98 1.93 16 2 Si 1.05 -3.70 9.89 68.60 0.68 -3.02 16 3 C -0.49 -1.50 6.76 113.37 0.77 -0.73 16 4 C -0.41 1.85 4.72 72.79 0.34 2.20 16 5 C -0.13 0.17 5.51 29.24 0.16 0.33 16 6 C 0.10 -0.15 4.87 84.27 0.41 0.26 16 7 N -0.61 -0.26 1.62 -897.50 -1.45 -1.71 16 8 C 0.58 4.16 4.15 86.70 0.36 4.52 16 9 O -0.55 -8.03 13.79 16.93 0.23 -7.80 16 10 C -0.18 -0.95 4.04 -20.04 -0.08 -1.04 16 11 C -0.10 -0.15 5.24 22.79 0.12 -0.03 16 12 C -0.06 -0.05 5.84 -20.13 -0.12 -0.16 16 13 C 0.03 0.02 7.03 24.27 0.17 0.19 16 14 C -0.19 0.17 10.26 22.40 0.23 0.40 16 15 C -0.18 0.13 10.77 22.13 0.24 0.37 16 16 C -0.06 0.06 6.22 24.88 0.15 0.22 16 17 C -0.04 0.17 2.98 71.24 0.21 0.38 16 18 O -0.54 1.92 12.87 -148.98 -1.92 0.00 16 19 Si 0.97 -4.45 27.38 68.60 1.88 -2.58 16 20 H -0.24 1.34 7.11 99.48 0.71 2.05 16 21 H -0.26 0.54 7.11 99.48 0.71 1.24 16 22 H -0.25 0.73 7.11 99.48 0.71 1.43 16 23 O -0.17 -0.06 8.78 -6.58 -0.06 -0.12 16 24 C -0.05 0.06 9.54 22.55 0.22 0.27 16 25 C -0.16 -0.12 9.96 22.30 0.22 0.10 16 26 C 0.16 0.92 6.55 22.89 0.15 1.07 16 27 O -0.49 -3.95 11.57 -68.79 -0.80 -4.75 16 28 C 0.08 -0.41 5.23 87.90 0.46 0.05 16 29 C -0.47 2.32 4.22 73.13 0.31 2.63 16 30 H 0.06 -0.06 7.96 -2.38 -0.02 -0.08 16 31 H 0.06 -0.07 7.96 -2.39 -0.02 -0.09 16 32 H 0.08 -0.29 7.96 -2.39 -0.02 -0.31 16 33 H 0.08 0.53 2.69 -2.38 -0.01 0.52 16 34 H 0.06 0.21 6.55 -2.39 -0.02 0.19 16 35 H 0.06 0.20 7.96 -2.38 -0.02 0.18 16 36 H 0.10 -0.82 7.90 -2.38 -0.02 -0.84 16 37 H 0.08 -0.32 7.95 -2.38 -0.02 -0.34 16 38 H 0.09 -0.29 8.14 -2.39 -0.02 -0.31 16 39 H 0.05 0.19 6.02 -2.38 -0.01 0.18 16 40 H 0.11 -0.93 7.17 -2.39 -0.02 -0.94 16 41 H 0.06 0.15 7.85 -2.39 -0.02 0.13 16 42 H 0.22 -0.41 1.75 -25.06 -0.04 -0.45 16 43 H 0.17 -0.89 7.25 -2.91 -0.02 -0.91 16 44 H 0.16 -0.47 8.06 -2.91 -0.02 -0.49 16 45 H 0.15 -1.00 7.96 -2.39 -0.02 -1.01 16 46 H 0.39 -3.84 8.70 -74.05 -0.64 -4.48 16 47 H 0.16 -1.09 6.96 -2.91 -0.02 -1.11 16 48 H 0.16 -0.47 8.06 -2.91 -0.02 -0.50 16 49 H 0.40 0.68 9.06 -74.06 -0.67 0.00 16 50 H 0.09 -0.47 5.68 -2.39 -0.01 -0.49 16 51 H 0.13 -1.54 7.17 -2.39 -0.02 -1.55 16 52 H 0.11 -0.96 8.00 -2.39 -0.02 -0.98 16 53 H 0.10 -0.27 3.95 -19.66 -0.08 -0.35 16 Total: 0.00 -20.52 398.48 4.19 -16.33 By element: Atomic # 1 Polarization: -9.63 SS G_CDS: 0.32 Total: -9.31 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: 5.30 Total: 12.96 kcal Atomic # 7 Polarization: -0.26 SS G_CDS: -1.45 Total: -1.71 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: -2.54 Total: -12.67 kcal Atomic # 14 Polarization: -8.15 SS G_CDS: 2.56 Total: -5.60 kcal Total: -20.52 4.19 -16.33 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915400_13259648.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.541 kcal (2) G-P(sol) polarization free energy of solvation -20.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds