Wall clock time and date at job start Thu Mar 4 2021 18:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86296 * 1 3 3 C 1.86300 * 109.44170 * 2 1 4 4 C 1.88807 * 109.43877 * 119.92352 * 2 1 3 5 5 C 1.49871 * 108.19174 * 50.78334 * 4 2 1 6 6 C 1.54272 * 114.56366 * 84.46190 * 5 4 2 7 7 N 1.47116 * 117.97388 * 314.21997 * 6 5 4 8 8 C 1.34769 * 118.23627 * 134.74247 * 7 6 5 9 9 O 1.21584 * 120.00678 * 176.35996 * 8 7 6 10 10 C 1.47652 * 120.00076 * 356.36413 * 8 7 6 11 11 C 1.40176 * 119.97263 * 231.97467 * 10 8 7 12 12 C 1.36355 * 120.66314 * 179.79288 * 11 10 8 13 13 C 1.39327 * 120.24001 * 0.43966 * 12 11 10 14 14 N 1.37398 * 133.25159 * 179.79316 * 13 12 11 15 15 C 1.36865 * 109.98179 * 180.02562 * 14 13 12 16 16 C 1.34181 * 109.96711 * 359.97438 * 15 14 13 17 17 C 1.50702 * 126.54153 * 180.02562 * 16 15 14 18 18 O 1.42901 * 109.47240 * 105.00225 * 17 16 15 19 19 Si 1.86296 * 109.46885 * 344.99901 * 17 16 15 20 20 H 1.48501 * 109.47268 * 60.00322 * 19 17 16 21 21 H 1.48502 * 109.47228 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47329 * 299.99902 * 19 17 16 23 23 C 1.40909 * 119.64310 * 359.81812 * 13 12 11 24 24 C 1.39190 * 119.97386 * 52.24492 * 10 8 7 25 25 C 1.42781 * 123.53473 * 314.76246 * 7 6 5 26 26 C 1.54956 * 107.20579 * 96.92482 * 25 7 6 27 27 H 1.08998 * 109.47556 * 300.07354 * 1 2 3 28 28 H 1.09004 * 109.46939 * 60.07827 * 1 2 3 29 29 H 1.09007 * 109.47083 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47424 * 179.91799 * 3 2 1 31 31 H 1.09000 * 109.46793 * 299.92550 * 3 2 1 32 32 H 1.09002 * 109.46680 * 59.92299 * 3 2 1 33 33 H 1.09002 * 109.72487 * 170.47236 * 4 2 1 34 34 H 1.08996 * 109.72471 * 291.09442 * 4 2 1 35 35 H 1.09004 * 108.44906 * 205.85112 * 5 4 2 36 36 H 1.08998 * 108.46061 * 323.19344 * 5 4 2 37 37 H 1.08994 * 107.73093 * 192.05963 * 6 5 4 38 38 H 1.09001 * 107.69089 * 76.33803 * 6 5 4 39 39 H 1.07990 * 119.66571 * 359.97438 * 11 10 8 40 40 H 1.08007 * 119.87702 * 180.25983 * 12 11 10 41 41 H 0.97008 * 125.00734 * 0.02562 * 14 13 12 42 42 H 1.08001 * 125.01104 * 180.02562 * 15 14 13 43 43 H 1.09007 * 109.47133 * 224.99848 * 17 16 15 44 44 H 0.96700 * 113.99683 * 299.99871 * 18 17 16 45 45 H 1.07998 * 120.30321 * 0.02562 * 24 10 8 46 46 H 1.08998 * 109.90709 * 337.50168 * 25 7 6 47 47 H 1.08995 * 109.97484 * 216.38500 * 25 7 6 48 48 H 1.09002 * 109.04537 * 163.35603 * 26 25 7 49 49 H 1.09001 * 109.04851 * 44.46892 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4831 1.7568 0.0000 4 6 2.4913 -0.8882 1.5431 5 6 1.7981 -2.2138 1.6349 6 6 2.4538 -3.3390 0.8078 7 7 2.8528 -3.0359 -0.5754 8 6 4.0678 -3.4435 -0.9924 9 8 4.4043 -3.2690 -2.1476 10 6 4.9905 -4.1020 -0.0463 11 6 6.3034 -3.6313 0.0938 12 6 7.1660 -4.2262 0.9664 13 6 6.7535 -5.3194 1.7254 14 7 7.3814 -6.1079 2.6591 15 6 6.5195 -7.0677 3.1163 16 6 5.3287 -6.9402 2.5111 17 6 4.1114 -7.7998 2.7355 18 8 3.1564 -7.0786 3.5165 19 14 4.6058 -9.3528 3.6379 20 1 5.2069 -8.9943 4.9476 21 1 3.4062 -10.1997 3.8596 22 1 5.5981 -10.1023 2.8263 23 6 5.4378 -5.8054 1.5898 24 6 4.5576 -5.1933 0.7015 25 6 2.0222 -2.3329 -1.4998 26 6 2.4634 -0.8477 -1.4747 27 1 -0.3634 0.5149 0.8893 28 1 -0.3633 0.5126 -0.8907 29 1 -0.3633 -1.0277 0.0005 30 1 3.5730 1.7574 0.0015 31 1 2.1205 2.2700 -0.8907 32 1 2.1183 2.2708 0.8893 33 1 3.5680 -1.0404 1.4672 34 1 2.2655 -0.2929 2.4278 35 1 1.7766 -2.5201 2.6808 36 1 0.7701 -2.0900 1.2943 37 1 1.7576 -4.1770 0.7769 38 1 3.3426 -3.6700 1.3450 39 1 6.6340 -2.7873 -0.4930 40 1 8.1735 -3.8505 1.0673 41 1 8.3001 -6.0002 2.9512 42 1 6.7618 -7.8167 3.8558 43 1 3.6701 -8.0629 1.7741 44 1 3.4816 -6.8115 4.3871 45 1 3.5484 -5.5622 0.5932 46 1 0.9782 -2.4151 -1.1976 47 1 2.1516 -2.7416 -2.5019 48 1 2.0707 -0.3450 -2.3586 49 1 3.5522 -0.7997 -1.4941 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915400_13287722.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 18:16:34 Heat of formation + Delta-G solvation = -36.177574 kcal Electronic energy + Delta-G solvation = -29300.424846 eV Core-core repulsion = 25544.578724 eV Total energy + Delta-G solvation = -3755.846122 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 346.163 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.51521 -41.30259 -38.01923 -37.53410 -37.43136 -34.04326 -33.40522 -32.18566 -30.49995 -30.29409 -28.96468 -28.34743 -27.16469 -26.41774 -25.25711 -23.98920 -23.02153 -22.19847 -20.94850 -19.92538 -19.13730 -18.53910 -17.68457 -17.30563 -16.98890 -16.69919 -16.12982 -15.80780 -15.69716 -15.34143 -15.11429 -15.08052 -14.89531 -14.66933 -14.49049 -14.39991 -13.98231 -13.89294 -13.75096 -13.69914 -13.48727 -13.37721 -13.14886 -13.07576 -12.89728 -12.69319 -12.50947 -12.35985 -12.26626 -12.12325 -11.95929 -11.70358 -11.68519 -10.98738 -10.74035 -10.69771 -10.56654 -10.24640 -10.16585 -9.67621 -9.30330 -8.76100 -0.06125 0.25408 1.27573 1.49439 1.54661 1.59044 1.65525 1.89714 1.98891 2.01839 2.04579 2.04750 2.12935 2.75680 2.76855 3.40313 3.64843 3.71064 3.83235 3.89806 3.92610 4.11246 4.16293 4.29345 4.35817 4.37067 4.45789 4.48895 4.55590 4.61545 4.65923 4.71710 4.78286 4.80047 4.83504 4.89265 4.92307 4.95719 4.99826 5.03438 5.06003 5.24525 5.31351 5.34571 5.39074 5.49369 5.53502 5.57234 5.60948 5.68785 5.79102 5.98761 6.26958 6.56281 6.87664 7.10355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.453 4.453 2 Si 1.073 2.927 3 C -0.466 4.466 4 C -0.405 4.405 5 C -0.116 4.116 6 C 0.087 3.913 7 N -0.585 5.585 8 C 0.556 3.444 9 O -0.580 6.580 10 C -0.168 4.168 11 C -0.070 4.070 12 C -0.125 4.125 13 C 0.104 3.896 14 N -0.576 5.576 15 C 0.067 3.933 16 C -0.212 4.212 17 C -0.048 4.048 18 O -0.554 6.554 19 Si 0.987 3.013 20 H -0.235 1.235 21 H -0.279 1.279 22 H -0.263 1.263 23 C -0.113 4.113 24 C -0.030 4.030 25 C 0.124 3.876 26 C -0.464 4.464 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.128 0.872 40 H 0.149 0.851 41 H 0.435 0.565 42 H 0.202 0.798 43 H 0.108 0.892 44 H 0.387 0.613 45 H 0.135 0.865 46 H 0.107 0.893 47 H 0.060 0.940 48 H 0.084 0.916 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.620 -1.350 8.214 8.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.561 4.561 2 Si 1.264 2.736 3 C -0.572 4.572 4 C -0.491 4.491 5 C -0.154 4.154 6 C -0.035 4.035 7 N -0.315 5.315 8 C 0.345 3.655 9 O -0.461 6.461 10 C -0.172 4.172 11 C -0.090 4.090 12 C -0.145 4.145 13 C -0.005 4.005 14 N -0.179 5.179 15 C -0.060 4.060 16 C -0.220 4.220 17 C -0.159 4.159 18 O -0.361 6.361 19 Si 0.810 3.190 20 H -0.158 1.158 21 H -0.204 1.204 22 H -0.187 1.187 23 C -0.117 4.117 24 C -0.050 4.050 25 C 0.001 3.999 26 C -0.547 4.547 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.106 0.894 39 H 0.146 0.854 40 H 0.167 0.833 41 H 0.276 0.724 42 H 0.218 0.782 43 H 0.126 0.874 44 H 0.236 0.764 45 H 0.153 0.847 46 H 0.125 0.875 47 H 0.078 0.922 48 H 0.103 0.897 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.774 -2.130 7.579 7.910 hybrid contribution 0.900 0.717 -0.376 1.210 sum 1.674 -1.413 7.203 7.529 Atomic orbital electron populations 1.26232 1.20227 1.04880 1.04726 0.77964 0.66622 0.64519 0.64482 1.26318 1.05839 1.20531 1.04486 1.25702 1.04342 1.03219 1.15798 1.21014 1.00121 0.93764 1.00486 1.22341 1.02274 0.98694 0.80173 1.47131 1.15540 1.55641 1.13170 1.18716 0.82018 0.77809 0.86941 1.90766 1.76361 1.58551 1.20391 1.19522 0.95523 1.00693 1.01471 1.20530 0.91387 0.99736 0.97330 1.19868 1.01251 0.95620 0.97811 1.18514 0.92801 0.95012 0.94182 1.41765 1.14778 1.26400 1.34981 1.22172 0.89199 0.94346 1.00279 1.20844 0.97093 1.00848 1.03185 1.24382 0.88771 1.01770 1.00948 1.86482 1.40029 1.77002 1.32544 0.85209 0.79128 0.74965 0.79680 1.15795 1.20381 1.18694 1.19103 0.93440 0.98688 1.00516 1.20695 0.99123 0.92916 0.92221 1.20800 0.95259 0.90603 0.93254 1.27014 1.05940 1.02782 1.18999 0.90697 0.91265 0.90503 0.92154 0.91563 0.90740 0.91951 0.89450 0.89483 0.90575 0.90442 0.89352 0.85444 0.83315 0.72450 0.78157 0.87443 0.76383 0.84721 0.87455 0.92187 0.89700 0.92511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.81 8.35 113.37 0.95 2.76 16 2 Si 1.07 -3.37 10.48 68.60 0.72 -2.65 16 3 C -0.47 0.17 8.65 113.37 0.98 1.15 16 4 C -0.41 1.06 4.83 70.98 0.34 1.40 16 5 C -0.12 0.42 5.32 30.02 0.16 0.58 16 6 C 0.09 -0.03 4.77 86.69 0.41 0.38 16 7 N -0.58 -2.78 2.45 -826.47 -2.02 -4.81 16 8 C 0.56 6.09 6.68 86.73 0.58 6.67 16 9 O -0.58 -11.16 16.41 -3.98 -0.07 -11.23 16 10 C -0.17 -1.28 4.77 -20.09 -0.10 -1.37 16 11 C -0.07 -0.41 9.65 22.30 0.22 -0.19 16 12 C -0.13 -0.19 10.00 22.09 0.22 0.03 16 13 C 0.10 0.13 7.27 39.19 0.28 0.41 16 14 N -0.58 2.75 6.05 -187.49 -1.13 1.61 16 15 C 0.07 -0.35 10.43 82.98 0.87 0.51 16 16 C -0.21 0.22 5.58 -18.61 -0.10 0.12 16 17 C -0.05 0.13 3.06 71.24 0.22 0.35 16 18 O -0.55 1.08 12.88 -148.98 -1.92 -0.84 16 19 Si 0.99 -4.66 26.08 68.60 1.79 -2.87 16 20 H -0.24 1.80 7.03 99.48 0.70 2.50 16 21 H -0.28 0.00 7.11 99.48 0.71 0.70 16 22 H -0.26 0.72 7.11 99.48 0.71 1.43 16 23 C -0.11 -0.37 6.34 -20.21 -0.13 -0.50 16 24 C -0.03 -0.15 7.42 22.74 0.17 0.02 16 25 C 0.12 0.46 5.38 87.73 0.47 0.94 16 26 C -0.46 -1.24 4.50 72.65 0.33 -0.91 16 27 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 28 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 29 H 0.08 -0.39 6.53 -2.38 -0.02 -0.41 16 30 H 0.06 0.07 7.96 -2.39 -0.02 0.05 16 31 H 0.07 0.00 7.96 -2.39 -0.02 -0.02 16 32 H 0.07 -0.11 7.96 -2.39 -0.02 -0.13 16 33 H 0.06 0.02 7.90 -2.39 -0.02 0.00 16 34 H 0.09 -0.39 7.99 -2.39 -0.02 -0.40 16 35 H 0.09 -0.44 8.14 -2.38 -0.02 -0.46 16 36 H 0.08 -0.47 5.94 -2.39 -0.01 -0.48 16 37 H 0.08 -0.19 8.02 -2.39 -0.02 -0.21 16 38 H 0.09 0.09 4.52 -2.39 -0.01 0.07 16 39 H 0.13 0.72 8.06 -2.92 -0.02 0.70 16 40 H 0.15 -0.54 8.06 -2.91 -0.02 -0.57 16 41 H 0.44 -4.73 8.96 -92.70 -0.83 -5.56 16 42 H 0.20 -2.36 6.30 -2.91 -0.02 -2.38 16 43 H 0.11 -0.20 7.96 -2.38 -0.02 -0.22 16 44 H 0.39 -3.41 8.70 -74.06 -0.64 -4.05 16 45 H 0.14 0.42 7.08 -2.91 -0.02 0.40 16 46 H 0.11 -0.24 7.14 -2.39 -0.02 -0.26 16 47 H 0.06 0.51 7.40 -2.39 -0.02 0.49 16 48 H 0.08 0.15 7.89 -2.39 -0.02 0.13 16 49 H 0.06 0.44 7.41 -2.39 -0.02 0.42 16 Total: 0.00 -20.75 382.43 3.48 -17.27 By element: Atomic # 1 Polarization: -9.08 SS G_CDS: 0.25 Total: -8.83 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: 5.87 Total: 12.35 kcal Atomic # 7 Polarization: -0.04 SS G_CDS: -3.16 Total: -3.19 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: -1.98 Total: -12.07 kcal Atomic # 14 Polarization: -8.03 SS G_CDS: 2.51 Total: -5.52 kcal Total: -20.75 3.48 -17.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915400_13287722.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.908 kcal (2) G-P(sol) polarization free energy of solvation -20.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds