Wall clock time and date at job start Thu Mar 4 2021 18:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86298 * 109.60468 * 2 1 4 4 C 1.88877 * 109.60795 * 120.33443 * 2 1 3 5 5 C 1.46938 * 108.02322 * 55.38163 * 4 2 1 6 6 C 1.52529 * 114.66246 * 62.65921 * 5 4 2 7 7 N 1.45044 * 107.75218 * 268.14279 * 6 5 4 8 8 C 1.34773 * 120.98607 * 285.04205 * 7 6 5 9 9 O 1.21514 * 120.00332 * 179.97438 * 8 7 6 10 10 C 1.48175 * 120.00153 * 359.97438 * 8 7 6 11 11 C 1.39262 * 119.72484 * 179.72819 * 10 8 7 12 12 C 1.38635 * 119.06251 * 179.73350 * 11 10 8 13 13 C 1.38593 * 118.48515 * 0.53000 * 12 11 10 14 14 C 1.50696 * 120.32341 * 179.70897 * 13 12 11 15 15 O 1.42898 * 109.47120 * 65.02386 * 14 13 12 16 16 Si 1.86306 * 109.46905 * 185.02231 * 14 13 12 17 17 H 1.48491 * 109.47042 * 59.99897 * 16 14 13 18 18 H 1.48504 * 109.46882 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46972 * 300.00131 * 16 14 13 20 20 C 1.38606 * 119.34898 * 359.73110 * 13 12 11 21 21 N 1.31498 * 120.90378 * 359.97438 * 20 13 12 22 22 C 1.47152 * 118.16466 * 105.02279 * 7 6 5 23 23 C 1.53978 * 113.91284 * 320.05210 * 22 7 6 24 24 H 1.09008 * 109.47147 * 299.66908 * 1 2 3 25 25 H 1.09002 * 109.47439 * 59.66122 * 1 2 3 26 26 H 1.09001 * 109.47330 * 179.66791 * 1 2 3 27 27 H 1.09005 * 109.47274 * 180.33615 * 3 2 1 28 28 H 1.09003 * 109.47039 * 300.33291 * 3 2 1 29 29 H 1.08994 * 109.47361 * 60.33594 * 3 2 1 30 30 H 1.09007 * 109.74572 * 295.75269 * 4 2 1 31 31 H 1.08993 * 109.78975 * 175.04103 * 4 2 1 32 32 H 1.09002 * 108.41886 * 183.94931 * 5 4 2 33 33 H 1.08999 * 108.42031 * 301.37089 * 5 4 2 34 34 H 1.08996 * 109.78165 * 27.85732 * 6 5 4 35 35 H 1.09002 * 109.78340 * 148.68018 * 6 5 4 36 36 H 1.07997 * 120.46990 * 359.97438 * 11 10 8 37 37 H 1.07992 * 120.75845 * 180.23613 * 12 11 10 38 38 H 1.09001 * 109.47109 * 305.02182 * 14 13 12 39 39 H 0.96698 * 114.00396 * 59.99546 * 15 14 13 40 40 H 1.08002 * 119.54590 * 179.97438 * 20 13 12 41 41 H 1.08999 * 108.59463 * 198.90697 * 22 7 6 42 42 H 1.08993 * 108.59458 * 81.19779 * 22 7 6 43 43 H 1.09003 * 108.89010 * 196.65755 * 23 22 7 44 44 H 1.08999 * 108.81216 * 78.12973 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4881 1.7550 0.0000 4 6 2.4968 -0.8986 1.5357 5 6 1.9016 -2.2419 1.5545 6 6 2.2898 -3.1266 0.3741 7 7 1.2911 -2.9450 -0.6619 8 6 0.0682 -3.5006 -0.5519 9 8 -0.7550 -3.3365 -1.4305 10 6 -0.2725 -4.3117 0.6403 11 6 -1.5398 -4.8785 0.7507 12 6 -1.8420 -5.6395 1.8695 13 6 -0.8693 -5.7975 2.8439 14 6 -1.1555 -6.6107 4.0799 15 8 -1.3672 -7.9756 3.7136 16 14 0.2928 -6.4982 5.2465 17 1 0.5127 -5.0798 5.6270 18 1 0.0109 -7.3001 6.4642 19 1 1.5092 -7.0256 4.5776 20 6 0.3692 -5.1998 2.6707 21 7 0.6313 -4.4878 1.5966 22 6 1.6495 -2.1361 -1.8379 23 6 2.4850 -0.8864 -1.5047 24 1 -0.3634 0.5087 0.8930 25 1 -0.3634 0.5191 -0.8869 26 1 -0.3634 -1.0276 -0.0060 27 1 3.5781 1.7525 -0.0060 28 1 2.1211 2.2714 -0.8870 29 1 2.1309 2.2679 0.8929 30 1 2.2005 -0.3518 2.4309 31 1 3.5832 -0.9775 1.4950 32 1 2.2070 -2.7411 2.4741 33 1 0.8167 -2.1378 1.5646 34 1 3.2708 -2.8335 0.0003 35 1 2.3101 -4.1707 0.6866 36 1 -2.2754 -4.7306 -0.0260 37 1 -2.8149 -6.0948 1.9813 38 1 -2.0484 -6.2235 4.5708 39 1 -0.6117 -8.3858 3.2708 40 1 1.1295 -5.3205 3.4283 41 1 0.7323 -1.8189 -2.3341 42 1 2.2169 -2.7596 -2.5287 43 1 2.4537 -0.2042 -2.3543 44 1 3.5180 -1.1895 -1.3339 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915400_13287726.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 18:16:47 Heat of formation + Delta-G solvation = -39.221930 kcal Electronic energy + Delta-G solvation = -24671.394885 eV Core-core repulsion = 21327.406650 eV Total energy + Delta-G solvation = -3343.988235 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 308.147 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.15851 -40.47851 -37.97821 -37.84192 -34.27604 -33.75127 -33.01554 -31.49669 -29.17168 -28.43469 -27.76525 -27.11370 -25.02511 -24.44413 -22.87819 -22.58640 -20.54205 -18.78266 -18.56854 -17.86795 -17.16371 -16.79713 -16.60125 -16.22820 -16.15494 -15.40382 -15.26716 -15.13481 -14.86499 -14.56573 -14.45387 -14.28327 -13.87707 -13.84995 -13.77018 -13.49824 -13.40424 -13.21469 -13.15363 -12.78291 -12.54173 -12.29377 -12.15695 -12.14347 -11.97699 -11.73713 -11.37705 -10.97519 -10.79191 -10.67027 -10.52383 -10.31806 -10.26833 -10.13376 -9.62859 -0.58707 0.08709 1.13931 1.47015 1.51022 1.56049 1.75063 1.86894 1.92344 1.94788 2.01138 2.65307 2.66298 2.90720 3.44456 3.51311 3.58940 3.78519 3.95457 4.05248 4.09088 4.15337 4.27975 4.41730 4.47571 4.59334 4.62953 4.67040 4.68383 4.77301 4.81853 4.82393 4.84219 4.85704 4.99742 5.01947 5.08682 5.23164 5.27453 5.37576 5.44877 5.52243 5.56721 5.61718 5.75189 6.27110 6.52623 6.66326 6.98169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.465 4.465 2 Si 1.040 2.960 3 C -0.453 4.453 4 C -0.400 4.400 5 C -0.108 4.108 6 C 0.102 3.898 7 N -0.585 5.585 8 C 0.565 3.435 9 O -0.571 6.571 10 C 0.062 3.938 11 C -0.118 4.118 12 C -0.049 4.049 13 C -0.141 4.141 14 C -0.076 4.076 15 O -0.548 6.548 16 Si 0.971 3.029 17 H -0.250 1.250 18 H -0.272 1.272 19 H -0.241 1.241 20 C 0.083 3.917 21 N -0.439 5.439 22 C 0.117 3.883 23 C -0.424 4.424 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.046 0.954 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.039 0.961 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.144 0.856 37 H 0.163 0.837 38 H 0.133 0.867 39 H 0.391 0.609 40 H 0.177 0.823 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.100 0.900 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.290 -0.532 3.761 5.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.233 2.767 3 C -0.561 4.561 4 C -0.486 4.486 5 C -0.146 4.146 6 C -0.020 4.020 7 N -0.316 5.316 8 C 0.353 3.647 9 O -0.450 6.450 10 C -0.075 4.075 11 C -0.139 4.139 12 C -0.075 4.075 13 C -0.143 4.143 14 C -0.187 4.187 15 O -0.355 6.355 16 Si 0.794 3.206 17 H -0.174 1.174 18 H -0.197 1.197 19 H -0.164 1.164 20 C -0.077 4.077 21 N -0.150 5.150 22 C -0.005 4.005 23 C -0.510 4.510 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.110 0.890 32 H 0.089 0.911 33 H 0.057 0.943 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.162 0.838 37 H 0.181 0.819 38 H 0.151 0.849 39 H 0.240 0.760 40 H 0.193 0.807 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.118 0.882 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.804 0.125 3.950 6.221 hybrid contribution -1.196 -0.405 -0.679 1.434 sum 3.608 -0.280 3.271 4.878 Atomic orbital electron populations 1.26507 1.24027 1.02836 1.03517 0.78885 0.64431 0.66410 0.67014 1.26148 1.06866 1.18747 1.04327 1.25182 1.06040 1.02941 1.14432 1.20219 0.99819 0.95289 0.99271 1.21862 0.91015 1.02588 0.86500 1.47861 1.12425 1.48750 1.22571 1.18083 0.82015 0.79438 0.85121 1.90771 1.49714 1.62502 1.42055 1.21042 0.92359 0.99540 0.94554 1.22264 0.96595 0.95732 0.99260 1.21714 1.00644 0.94063 0.91087 1.21764 0.94933 0.99102 0.98533 1.25033 1.13103 0.82925 0.97599 1.86530 1.45185 1.22610 1.81208 0.85364 0.76231 0.81071 0.77939 1.17417 1.19711 1.16420 1.23161 0.95829 0.93346 0.95320 1.68163 1.32275 1.13660 1.00911 1.21292 1.00051 0.92649 0.86484 1.26540 1.05402 1.02087 1.16938 0.91947 0.92151 0.93460 0.90256 0.91486 0.91373 0.90532 0.88976 0.91071 0.94256 0.88220 0.87872 0.83783 0.81902 0.84907 0.75973 0.80662 0.91618 0.91288 0.88177 0.88271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 -1.82 8.41 113.37 0.95 -0.87 16 2 Si 1.04 -3.30 10.48 68.60 0.72 -2.58 16 3 C -0.45 1.24 8.65 113.37 0.98 2.22 16 4 C -0.40 1.44 4.77 70.10 0.33 1.77 16 5 C -0.11 0.11 3.44 28.56 0.10 0.20 16 6 C 0.10 -0.11 4.95 86.50 0.43 0.32 16 7 N -0.59 -2.13 1.85 -825.84 -1.52 -3.65 16 8 C 0.57 5.07 5.88 86.88 0.51 5.58 16 9 O -0.57 -8.91 15.82 -3.76 -0.06 -8.97 16 10 C 0.06 0.34 6.12 41.89 0.26 0.59 16 11 C -0.12 -0.41 9.63 22.61 0.22 -0.19 16 12 C -0.05 0.06 9.83 22.45 0.22 0.28 16 13 C -0.14 0.43 5.37 -19.69 -0.11 0.32 16 14 C -0.08 0.43 2.82 71.23 0.20 0.63 16 15 O -0.55 2.15 12.84 -148.98 -1.91 0.24 16 16 Si 0.97 -5.62 25.16 68.60 1.73 -3.90 16 17 H -0.25 1.20 7.11 99.48 0.71 1.91 16 18 H -0.27 0.40 7.11 99.48 0.71 1.11 16 19 H -0.24 1.60 7.04 99.48 0.70 2.30 16 20 C 0.08 -0.17 9.84 84.83 0.83 0.67 16 21 N -0.44 -0.73 4.43 -184.90 -0.82 -1.55 16 22 C 0.12 0.23 5.72 86.59 0.50 0.73 16 23 C -0.42 1.50 4.37 72.31 0.32 1.82 16 24 H 0.06 0.23 7.96 -2.38 -0.02 0.21 16 25 H 0.06 0.28 7.96 -2.39 -0.02 0.26 16 26 H 0.05 0.39 5.80 -2.39 -0.01 0.37 16 27 H 0.08 -0.34 7.96 -2.38 -0.02 -0.36 16 28 H 0.07 -0.14 7.96 -2.39 -0.02 -0.16 16 29 H 0.07 -0.14 7.96 -2.39 -0.02 -0.16 16 30 H 0.08 -0.25 8.00 -2.38 -0.02 -0.27 16 31 H 0.09 -0.59 8.00 -2.39 -0.02 -0.61 16 32 H 0.07 -0.13 7.95 -2.39 -0.02 -0.15 16 33 H 0.04 0.12 5.47 -2.39 -0.01 0.11 16 34 H 0.10 -0.52 6.71 -2.39 -0.02 -0.54 16 35 H 0.10 -0.06 5.94 -2.39 -0.01 -0.07 16 36 H 0.14 0.61 7.64 -2.91 -0.02 0.59 16 37 H 0.16 -0.76 8.06 -2.91 -0.02 -0.78 16 38 H 0.13 -1.00 7.96 -2.39 -0.02 -1.02 16 39 H 0.39 -3.96 8.70 -74.06 -0.64 -4.61 16 40 H 0.18 -1.14 4.88 -2.91 -0.01 -1.15 16 41 H 0.07 0.41 7.15 -2.39 -0.02 0.39 16 42 H 0.07 0.06 8.14 -2.39 -0.02 0.04 16 43 H 0.10 -0.49 7.93 -2.39 -0.02 -0.51 16 44 H 0.10 -0.68 7.30 -2.39 -0.02 -0.70 16 Total: 0.00 -15.10 337.07 4.98 -10.11 By element: Atomic # 1 Polarization: -4.89 SS G_CDS: 1.11 Total: -3.78 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: 5.74 Total: 14.08 kcal Atomic # 7 Polarization: -2.86 SS G_CDS: -2.34 Total: -5.20 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: -1.97 Total: -8.73 kcal Atomic # 14 Polarization: -8.93 SS G_CDS: 2.45 Total: -6.48 kcal Total: -15.10 4.98 -10.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915400_13287726.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.107 kcal (2) G-P(sol) polarization free energy of solvation -15.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds