Wall clock time and date at job start Thu Mar 4 2021 18:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34654 * 124.85381 * 2 1 4 4 C 1.36762 * 108.39641 * 180.02562 * 3 2 1 5 5 C 1.47263 * 126.94218 * 179.97438 * 4 3 2 6 6 O 1.21625 * 120.00268 * 174.44388 * 5 4 3 7 7 N 1.34780 * 119.99954 * 354.43576 * 5 4 3 8 8 C 1.45480 * 116.96760 * 356.72776 * 7 5 4 9 9 C 1.52380 * 105.89803 * 80.90475 * 8 7 5 10 10 C 1.54224 * 108.06526 * 102.24337 * 9 8 7 11 11 Si 1.86972 * 109.28613 * 321.63477 * 10 9 8 12 12 C 1.86296 * 109.02307 * 199.06155 * 11 10 9 13 13 C 1.86307 * 108.95993 * 80.20335 * 11 10 9 14 14 C 1.85337 * 111.77173 * 319.65675 * 11 10 9 15 15 C 1.42427 * 116.96738 * 176.74166 * 7 5 4 16 16 C 1.46685 * 106.11877 * 0.22170 * 4 3 2 17 17 C 1.34490 * 106.32806 * 359.63108 * 16 4 3 18 18 C 1.50702 * 125.56809 * 180.15896 * 17 16 4 19 19 O 1.42899 * 109.46935 * 150.24868 * 18 17 16 20 20 Si 1.86302 * 109.47323 * 30.25157 * 18 17 16 21 21 H 1.48500 * 109.46777 * 299.99707 * 20 18 17 22 22 H 1.48491 * 109.47162 * 59.99722 * 20 18 17 23 23 H 1.48501 * 109.46900 * 180.02562 * 20 18 17 24 24 H 1.08999 * 109.47310 * 89.97185 * 1 2 3 25 25 H 1.08998 * 109.47361 * 209.97801 * 1 2 3 26 26 H 1.09008 * 109.46691 * 329.97538 * 1 2 3 27 27 H 1.08006 * 125.79788 * 0.04138 * 3 2 1 28 28 H 1.08997 * 110.18171 * 200.03783 * 8 7 5 29 29 H 1.08994 * 110.17802 * 321.77910 * 8 7 5 30 30 H 1.09000 * 109.73181 * 222.13924 * 9 8 7 31 31 H 1.08999 * 109.73946 * 342.83393 * 9 8 7 32 32 H 1.09002 * 109.56832 * 201.62927 * 10 9 8 33 33 H 1.09000 * 109.41662 * 81.54764 * 10 9 8 34 34 H 1.08997 * 109.47552 * 182.26240 * 12 11 10 35 35 H 1.08994 * 109.47303 * 302.26976 * 12 11 10 36 36 H 1.09010 * 109.46881 * 62.26535 * 12 11 10 37 37 H 1.09000 * 109.46816 * 278.60712 * 13 11 10 38 38 H 1.09005 * 109.46687 * 38.59923 * 13 11 10 39 39 H 1.08994 * 109.47354 * 158.60041 * 13 11 10 40 40 H 1.08996 * 109.50623 * 324.75328 * 14 11 10 41 41 H 1.08999 * 109.51080 * 204.60114 * 14 11 10 42 42 H 1.09001 * 109.85848 * 3.73684 * 15 7 5 43 43 H 1.09003 * 109.85690 * 124.68160 * 15 7 5 44 44 H 1.08002 * 126.83742 * 179.74927 * 16 4 3 45 45 H 1.08998 * 109.47334 * 270.24476 * 18 17 16 46 46 H 0.96700 * 114.00552 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2346 1.1050 0.0000 4 6 3.5462 0.7175 -0.0006 5 6 4.7284 1.5956 -0.0013 6 8 5.8417 1.1166 0.1002 7 7 4.5767 2.9300 -0.1146 8 6 3.2225 3.4261 -0.3059 9 6 2.5888 3.4544 1.0796 10 6 2.5914 4.9142 1.5770 11 14 4.1832 5.7427 1.0520 12 6 4.4563 7.2554 2.1045 13 6 4.0356 6.2627 -0.7309 14 6 5.6394 4.6104 1.2322 15 6 5.7571 3.7232 -0.0364 16 6 3.5375 -0.7493 -0.0064 17 6 2.2446 -1.1198 -0.0005 18 6 1.7397 -2.5397 0.0001 19 8 0.4813 -2.5974 0.6748 20 14 2.9654 -3.6344 0.8775 21 1 4.2731 -3.5744 0.1763 22 1 3.1325 -3.1679 2.2773 23 1 2.4681 -5.0337 0.8775 24 1 -0.3634 0.0005 -1.0276 25 1 -0.3634 -0.8901 0.5135 26 1 -0.3633 0.8899 0.5143 27 1 1.8767 2.1240 0.0006 28 1 3.2462 4.4303 -0.7291 29 1 2.6655 2.7559 -0.9605 30 1 1.5659 3.0821 1.0240 31 1 3.1699 2.8351 1.7629 32 1 2.5142 4.9296 2.6642 33 1 1.7441 5.4460 1.1442 34 1 5.3619 7.7666 1.7779 35 1 3.6036 7.9268 2.0039 36 1 4.5633 6.9577 3.1477 37 1 4.2355 5.4075 -1.3765 38 1 3.0275 6.6323 -0.9192 39 1 4.7571 7.0524 -0.9400 40 1 5.5015 3.9767 2.1083 41 1 6.5479 5.2014 1.3488 42 1 6.6321 3.0781 0.0429 43 1 5.8400 4.3521 -0.9228 44 1 4.3980 -1.4019 -0.0121 45 1 1.6170 -2.8821 -1.0274 46 1 0.0958 -3.4833 0.7131 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915400_13287730.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 18:16:57 Heat of formation + Delta-G solvation = 8.810258 kcal Electronic energy + Delta-G solvation = -25337.631446 eV Core-core repulsion = 21968.414565 eV Total energy + Delta-G solvation = -3369.216882 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 310.163 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.79501 -40.99713 -38.01526 -37.69098 -34.53498 -33.68331 -32.10381 -30.70126 -29.17402 -28.71135 -27.46023 -27.19747 -26.05988 -24.39172 -22.80840 -22.15437 -20.68539 -20.19243 -18.41237 -18.10450 -17.56559 -16.94226 -16.74030 -16.36112 -15.81930 -15.71143 -15.24621 -15.08146 -14.86555 -14.56732 -14.52962 -14.02417 -13.99156 -13.69549 -13.57924 -13.54099 -13.27342 -13.18295 -13.03819 -12.99820 -12.82147 -12.66931 -12.54140 -12.47960 -12.06139 -11.91596 -11.89979 -11.66372 -11.00040 -10.73683 -10.60224 -10.42991 -10.39823 -9.72369 -9.43993 -9.12376 0.71884 0.91873 1.37101 1.41788 1.51533 1.87611 1.92087 1.94545 1.98058 2.04735 2.23514 2.48386 2.69992 3.17847 3.60498 3.76195 3.88885 3.89935 4.02646 4.11976 4.31418 4.36955 4.42509 4.43672 4.47670 4.56832 4.60014 4.70717 4.72512 4.81461 4.82251 4.83421 4.85910 4.89383 4.94251 4.98519 5.01707 5.13005 5.31575 5.39551 5.49712 5.60562 5.63349 5.69179 5.80455 6.01533 6.27828 6.36726 6.75055 7.27215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.422 5.422 3 C 0.032 3.968 4 C -0.263 4.263 5 C 0.571 3.429 6 O -0.601 6.601 7 N -0.592 5.592 8 C 0.040 3.960 9 C -0.140 4.140 10 C -0.412 4.412 11 Si 1.063 2.937 12 C -0.465 4.465 13 C -0.468 4.468 14 C -0.449 4.449 15 C 0.113 3.887 16 C -0.184 4.184 17 C 0.021 3.979 18 C -0.040 4.040 19 O -0.554 6.554 20 Si 0.986 3.014 21 H -0.274 1.274 22 H -0.286 1.286 23 H -0.236 1.236 24 H 0.086 0.914 25 H 0.115 0.885 26 H 0.102 0.898 27 H 0.244 0.756 28 H 0.137 0.863 29 H 0.113 0.887 30 H 0.099 0.901 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.101 0.899 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.072 0.928 40 H 0.059 0.941 41 H 0.086 0.914 42 H 0.068 0.932 43 H 0.091 0.909 44 H 0.132 0.868 45 H 0.105 0.895 46 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.993 2.406 -2.017 10.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.095 5.095 3 C -0.104 4.104 4 C -0.273 4.273 5 C 0.363 3.637 6 O -0.483 6.483 7 N -0.322 5.322 8 C -0.080 4.080 9 C -0.177 4.177 10 C -0.498 4.498 11 Si 1.254 2.746 12 C -0.571 4.571 13 C -0.575 4.575 14 C -0.532 4.532 15 C -0.010 4.010 16 C -0.208 4.208 17 C -0.089 4.089 18 C -0.151 4.151 19 O -0.365 6.365 20 Si 0.811 3.189 21 H -0.199 1.199 22 H -0.211 1.211 23 H -0.158 1.158 24 H 0.105 0.895 25 H 0.134 0.866 26 H 0.121 0.879 27 H 0.259 0.741 28 H 0.154 0.846 29 H 0.130 0.870 30 H 0.117 0.883 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.119 0.881 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.106 0.894 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.104 0.896 42 H 0.086 0.914 43 H 0.109 0.891 44 H 0.149 0.851 45 H 0.123 0.877 46 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -9.083 2.231 -1.465 9.467 hybrid contribution 0.602 -0.511 0.062 0.791 sum -8.482 1.720 -1.403 8.767 Atomic orbital electron populations 1.22755 0.74081 1.07202 1.05003 1.43926 1.08406 1.04377 1.52759 1.24639 0.89521 0.94464 1.01732 1.20279 0.92686 0.93437 1.20935 1.18056 0.87681 0.83091 0.74833 1.90701 1.28156 1.76090 1.53391 1.46714 1.08548 1.05341 1.71594 1.23113 0.81179 1.04937 0.98805 1.22260 1.01798 0.97930 0.95749 1.26590 1.16895 1.00663 1.05667 0.78417 0.65062 0.64280 0.66833 1.26321 1.04940 1.16120 1.09708 1.26679 1.05963 1.06226 1.18582 1.27303 1.17424 1.09006 0.99429 1.20921 0.87722 0.93844 0.98556 1.21700 0.95405 0.94100 1.09614 1.19940 0.89735 0.88885 1.10381 1.24153 0.93545 0.95032 1.02414 1.86274 1.33985 1.37033 1.79211 0.85209 0.77377 0.77964 0.78368 1.19945 1.21112 1.15841 0.89538 0.86647 0.87932 0.74112 0.84617 0.86979 0.88320 0.92381 0.90685 0.88068 0.91528 0.90640 0.91937 0.90453 0.89390 0.90877 0.92217 0.89565 0.91393 0.89105 0.85052 0.87693 0.74332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 -0.33 10.71 127.77 1.37 1.04 16 2 N -0.42 -0.36 3.09 -533.23 -1.65 -2.01 16 3 C 0.03 0.04 7.94 83.91 0.67 0.71 16 4 C -0.26 -2.58 5.90 -19.04 -0.11 -2.69 16 5 C 0.57 7.63 7.06 86.62 0.61 8.25 16 6 O -0.60 -13.76 15.97 -4.11 -0.07 -13.83 16 7 N -0.59 -2.79 2.19 -834.92 -1.83 -4.63 16 8 C 0.04 -0.16 4.89 86.37 0.42 0.27 16 9 C -0.14 0.67 4.04 30.80 0.12 0.80 16 10 C -0.41 2.86 5.08 72.40 0.37 3.23 16 11 Si 1.06 -6.43 10.05 68.60 0.69 -5.74 16 12 C -0.46 1.56 8.65 113.37 0.98 2.54 16 13 C -0.47 3.25 7.38 113.37 0.84 4.09 16 14 C -0.45 -0.50 4.96 72.75 0.36 -0.14 16 15 C 0.11 0.54 5.83 87.90 0.51 1.06 16 16 C -0.18 -2.02 9.50 23.62 0.22 -1.80 16 17 C 0.02 0.10 6.17 40.98 0.25 0.35 16 18 C -0.04 0.07 2.97 71.24 0.21 0.29 16 19 O -0.55 3.01 9.69 -148.98 -1.44 1.57 16 20 Si 0.99 1.25 26.57 68.60 1.82 3.08 16 21 H -0.27 -1.60 6.81 99.48 0.68 -0.92 16 22 H -0.29 -2.18 7.11 99.48 0.71 -1.47 16 23 H -0.24 0.45 7.11 99.48 0.71 1.16 16 24 H 0.09 -0.79 8.14 -2.39 -0.02 -0.81 16 25 H 0.12 -0.67 5.13 -2.39 -0.01 -0.68 16 26 H 0.10 -1.13 8.13 -2.38 -0.02 -1.15 16 27 H 0.24 -1.52 2.26 -2.91 -0.01 -1.53 16 28 H 0.14 -1.11 2.84 -2.39 -0.01 -1.12 16 29 H 0.11 -0.66 4.92 -2.39 -0.01 -0.68 16 30 H 0.10 -0.94 6.33 -2.39 -0.02 -0.95 16 31 H 0.06 0.07 7.15 -2.39 -0.02 0.05 16 32 H 0.07 -0.42 7.97 -2.39 -0.02 -0.44 16 33 H 0.10 -1.09 7.97 -2.39 -0.02 -1.10 16 34 H 0.07 -0.18 7.96 -2.39 -0.02 -0.19 16 35 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 36 H 0.06 -0.12 7.96 -2.38 -0.02 -0.14 16 37 H 0.08 -0.51 4.91 -2.39 -0.01 -0.52 16 38 H 0.09 -0.82 7.96 -2.38 -0.02 -0.84 16 39 H 0.07 -0.44 7.96 -2.39 -0.02 -0.46 16 40 H 0.06 0.29 7.96 -2.39 -0.02 0.27 16 41 H 0.09 0.02 7.96 -2.39 -0.02 0.00 16 42 H 0.07 0.81 6.54 -2.39 -0.02 0.79 16 43 H 0.09 0.01 6.56 -2.39 -0.02 -0.01 16 44 H 0.13 1.74 6.70 -2.91 -0.02 1.72 16 45 H 0.11 -0.66 7.96 -2.39 -0.02 -0.68 16 46 H 0.40 -5.81 8.74 -74.06 -0.65 -6.46 16 Total: 0.00 -25.52 337.66 5.44 -20.08 By element: Atomic # 1 Polarization: -17.60 SS G_CDS: 1.08 Total: -16.51 kcal Atomic # 6 Polarization: 11.15 SS G_CDS: 6.83 Total: 17.98 kcal Atomic # 7 Polarization: -3.16 SS G_CDS: -3.48 Total: -6.64 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: -1.51 Total: -12.25 kcal Atomic # 14 Polarization: -5.17 SS G_CDS: 2.51 Total: -2.66 kcal Total: -25.52 5.44 -20.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915400_13287730.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.893 kcal (2) G-P(sol) polarization free energy of solvation -25.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds