Wall clock time and date at job start Thu Mar 4 2021 18:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37681 * 119.95485 * 2 1 4 4 C 1.39759 * 119.90808 * 180.27770 * 3 2 1 5 5 C 1.47609 * 120.08349 * 179.74633 * 4 3 2 6 6 O 1.21589 * 119.99541 * 207.03580 * 5 4 3 7 7 N 1.34774 * 120.00044 * 27.03509 * 5 4 3 8 8 C 1.45040 * 120.98812 * 345.60225 * 7 5 4 9 9 C 1.52520 * 107.75423 * 285.04631 * 8 7 5 10 10 C 1.46952 * 114.65946 * 268.14260 * 9 8 7 11 11 Si 1.88875 * 108.02083 * 62.65546 * 10 9 8 12 12 C 1.86304 * 109.60858 * 55.38876 * 11 10 9 13 13 C 1.86301 * 109.60256 * 175.71554 * 11 10 9 14 14 C 1.85381 * 108.65658 * 295.63289 * 11 10 9 15 15 C 1.47154 * 120.84887 * 165.62251 * 7 5 4 16 16 C 1.39709 * 119.82359 * 359.47243 * 4 3 2 17 17 C 1.37723 * 119.91360 * 0.24993 * 16 4 3 18 18 C 1.50700 * 119.95471 * 179.97438 * 17 16 4 19 19 O 1.42908 * 109.46762 * 105.00519 * 18 17 16 20 20 Si 1.86294 * 109.47326 * 345.00641 * 18 17 16 21 21 H 1.48498 * 109.47507 * 59.99755 * 20 18 17 22 22 H 1.48504 * 109.47166 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46873 * 299.99584 * 20 18 17 24 24 C 1.38972 * 120.08656 * 0.02562 * 17 16 4 25 25 O 1.35713 * 119.91099 * 179.97438 * 24 17 16 26 26 H 1.09003 * 109.46580 * 270.25318 * 1 2 3 27 27 H 1.08992 * 109.46861 * 30.25227 * 1 2 3 28 28 H 1.08996 * 109.46940 * 150.25347 * 1 2 3 29 29 H 1.07998 * 120.04886 * 359.97438 * 3 2 1 30 30 H 1.08996 * 109.94348 * 165.42253 * 8 7 5 31 31 H 1.09003 * 109.72937 * 44.53803 * 8 7 5 32 32 H 1.08997 * 108.42265 * 146.85411 * 9 8 7 33 33 H 1.08996 * 108.42119 * 29.42627 * 9 8 7 34 34 H 1.09002 * 109.74555 * 182.28805 * 10 9 8 35 35 H 1.08998 * 109.75217 * 302.97505 * 10 9 8 36 36 H 1.08993 * 109.46837 * 59.99406 * 12 11 10 37 37 H 1.08991 * 109.47132 * 179.97438 * 12 11 10 38 38 H 1.09000 * 109.46804 * 299.99539 * 12 11 10 39 39 H 1.09007 * 109.47177 * 60.00524 * 13 11 10 40 40 H 1.09005 * 109.46962 * 179.97438 * 13 11 10 41 41 H 1.08997 * 109.47354 * 300.00374 * 13 11 10 42 42 H 1.08998 * 108.89180 * 200.89147 * 14 11 10 43 43 H 1.09001 * 108.89166 * 319.36537 * 14 11 10 44 44 H 1.08999 * 108.59495 * 18.88488 * 15 7 5 45 45 H 1.09001 * 108.48317 * 261.10079 * 15 7 5 46 46 H 1.08009 * 120.04178 * 180.27358 * 16 4 3 47 47 H 1.09001 * 109.47051 * 225.00292 * 18 17 16 48 48 H 0.96707 * 113.99488 * 299.99750 * 19 18 17 49 49 H 0.96696 * 113.99846 * 89.99819 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1945 1.1929 0.0000 4 6 3.5921 1.1918 -0.0059 5 6 4.3330 2.4684 -0.0115 6 8 5.4474 2.5224 -0.4950 7 7 3.7744 3.5742 0.5191 8 6 2.3558 3.6246 0.8172 9 6 1.6082 3.7784 -0.5032 10 6 1.3412 5.1684 -0.8983 11 14 3.0013 6.0326 -1.1531 12 6 4.0193 5.0793 -2.3883 13 6 2.7152 7.7629 -1.7815 14 6 3.8925 6.0955 0.4713 15 6 4.5883 4.7647 0.8116 16 6 4.2860 -0.0208 -0.0006 17 6 3.5910 -1.2098 0.0052 18 6 4.3385 -2.5183 0.0104 19 8 4.2729 -3.0992 1.3144 20 14 6.1193 -2.2181 -0.4468 21 1 6.7342 -1.2929 0.5387 22 1 6.8560 -3.5075 -0.4411 23 1 6.1874 -1.6145 -1.8019 24 6 2.2012 -1.2044 0.0052 25 8 1.5200 -2.3782 0.0104 26 1 -0.3632 0.0045 1.0277 27 1 -0.3633 0.8877 -0.5177 28 1 -0.3633 -0.8922 -0.5099 29 1 1.6546 2.1282 -0.0004 30 1 2.1418 4.4756 1.4637 31 1 2.0501 2.7009 1.3088 32 1 0.6559 3.2542 -0.4230 33 1 2.1959 3.3039 -1.2890 34 1 0.7713 5.1842 -1.8273 35 1 0.7791 5.6732 -0.1127 36 1 3.4867 5.0310 -3.3379 37 1 4.9764 5.5801 -2.5339 38 1 4.1903 4.0693 -2.0158 39 1 2.1245 8.3205 -1.0545 40 1 3.6745 8.2597 -1.9273 41 1 2.1794 7.7212 -2.7297 42 1 4.6421 6.8858 0.4321 43 1 3.1758 6.3304 1.2582 44 1 5.5148 4.7010 0.2411 45 1 4.8343 4.7627 1.8735 46 1 5.3661 -0.0258 -0.0006 47 1 3.8872 -3.1974 -0.7130 48 1 4.6571 -2.5483 2.0101 49 1 1.3226 -2.7144 0.8953 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915400_13287732.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 18:17:09 Heat of formation + Delta-G solvation = -81.347133 kcal Electronic energy + Delta-G solvation = -29152.446649 eV Core-core repulsion = 25397.837828 eV Total energy + Delta-G solvation = -3754.608821 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.167 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.22480 -40.65314 -38.29976 -37.81324 -37.48578 -34.55366 -33.86244 -32.57583 -30.80845 -29.12714 -28.41490 -28.09561 -27.63848 -26.68084 -25.11560 -23.10694 -22.83249 -21.84320 -20.15009 -19.58189 -18.52395 -18.13238 -17.63329 -17.00877 -16.72167 -16.40097 -16.35361 -15.88277 -15.50483 -15.31852 -15.04530 -14.80461 -14.76610 -14.49144 -14.20896 -14.17325 -13.87466 -13.80597 -13.52987 -13.42064 -13.28408 -13.16660 -12.93681 -12.88509 -12.77526 -12.69746 -12.49003 -12.37165 -12.25560 -12.18722 -11.87092 -11.81718 -11.46182 -11.06639 -10.79734 -10.59755 -10.47928 -10.20156 -9.91837 -9.81186 -9.55344 -0.35688 0.06283 1.04805 1.28644 1.39242 1.52242 1.76199 1.78721 1.86962 1.93626 2.00544 2.45683 2.67434 3.15691 3.36690 3.39696 3.56553 3.69302 3.77805 3.99311 4.04975 4.13484 4.21581 4.35401 4.38079 4.47929 4.48783 4.63830 4.66580 4.67702 4.72703 4.76049 4.79005 4.83044 4.83764 4.85865 4.87393 4.98816 5.00308 5.05740 5.09166 5.20861 5.25459 5.32860 5.36030 5.50065 5.52250 5.60765 5.64175 5.65336 6.28587 6.60120 6.76475 6.97152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.119 4.119 3 C -0.107 4.107 4 C -0.152 4.152 5 C 0.560 3.440 6 O -0.577 6.577 7 N -0.599 5.599 8 C 0.071 3.929 9 C -0.150 4.150 10 C -0.390 4.390 11 Si 1.044 2.956 12 C -0.474 4.474 13 C -0.457 4.457 14 C -0.426 4.426 15 C 0.118 3.882 16 C -0.080 4.080 17 C -0.158 4.158 18 C -0.056 4.056 19 O -0.541 6.541 20 Si 0.962 3.038 21 H -0.258 1.258 22 H -0.259 1.259 23 H -0.273 1.273 24 C 0.157 3.843 25 O -0.495 6.495 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.205 0.795 30 H 0.123 0.877 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.051 0.949 34 H 0.086 0.914 35 H 0.104 0.896 36 H 0.060 0.940 37 H 0.052 0.948 38 H 0.050 0.950 39 H 0.080 0.920 40 H 0.062 0.938 41 H 0.067 0.933 42 H 0.095 0.905 43 H 0.104 0.896 44 H 0.060 0.940 45 H 0.072 0.928 46 H 0.122 0.878 47 H 0.125 0.875 48 H 0.388 0.612 49 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.837 3.596 4.940 9.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.120 4.120 3 C -0.124 4.124 4 C -0.156 4.156 5 C 0.351 3.649 6 O -0.458 6.458 7 N -0.331 5.331 8 C -0.051 4.051 9 C -0.187 4.187 10 C -0.477 4.477 11 Si 1.236 2.764 12 C -0.578 4.578 13 C -0.564 4.564 14 C -0.511 4.511 15 C -0.003 4.003 16 C -0.099 4.099 17 C -0.159 4.159 18 C -0.168 4.168 19 O -0.348 6.348 20 Si 0.788 3.212 21 H -0.182 1.182 22 H -0.184 1.184 23 H -0.198 1.198 24 C 0.112 3.888 25 O -0.309 6.309 26 H 0.109 0.891 27 H 0.103 0.897 28 H 0.089 0.911 29 H 0.221 0.779 30 H 0.141 0.859 31 H 0.123 0.877 32 H 0.120 0.880 33 H 0.070 0.930 34 H 0.105 0.895 35 H 0.122 0.878 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.100 0.900 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.114 0.886 43 H 0.123 0.877 44 H 0.079 0.921 45 H 0.090 0.910 46 H 0.139 0.861 47 H 0.143 0.857 48 H 0.237 0.763 49 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -6.587 3.327 3.551 8.190 hybrid contribution 0.805 0.113 0.356 0.887 sum -5.783 3.440 3.908 7.781 Atomic orbital electron populations 1.20796 0.87925 1.04198 1.03999 1.20575 0.98540 0.91558 1.01307 1.23315 0.92438 1.01747 0.94922 1.19824 0.94922 0.92431 1.08382 1.18394 0.85193 0.84274 0.77047 1.90778 1.22556 1.86045 1.46382 1.47755 1.10538 1.12950 1.61815 1.22300 0.78423 1.06295 0.98105 1.20755 1.01869 0.99180 0.96935 1.24995 1.15265 1.01411 1.05993 0.78837 0.67153 0.65560 0.64866 1.26640 1.09456 1.08804 1.12852 1.26195 1.04738 1.18843 1.06640 1.26563 1.08607 0.97386 1.18589 1.21275 0.94250 0.83946 1.00877 1.21060 0.99943 0.91450 0.97451 1.20564 0.94559 0.95322 1.05437 1.24609 1.08665 0.93797 0.89727 1.86493 1.84537 1.47621 1.16160 0.85522 0.76074 0.79403 0.80231 1.18215 1.18379 1.19763 1.18445 0.88501 0.86058 0.95846 1.84626 1.75342 1.35587 1.35312 0.89087 0.89661 0.91054 0.77941 0.85863 0.87689 0.88039 0.93017 0.89521 0.87786 0.92107 0.92868 0.93044 0.90044 0.91920 0.91384 0.88626 0.87693 0.92113 0.90978 0.86059 0.85715 0.76268 0.72616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.74 9.78 71.24 0.70 1.44 16 2 C -0.12 0.16 5.89 -19.81 -0.12 0.04 16 3 C -0.11 0.10 6.67 22.51 0.15 0.25 16 4 C -0.15 -0.82 5.72 -20.08 -0.11 -0.93 16 5 C 0.56 4.57 5.67 86.72 0.49 5.06 16 6 O -0.58 -9.72 15.64 -4.00 -0.06 -9.79 16 7 N -0.60 -0.35 1.85 -826.48 -1.53 -1.87 16 8 C 0.07 -0.50 4.88 86.49 0.42 -0.08 16 9 C -0.15 1.11 3.27 28.56 0.09 1.20 16 10 C -0.39 3.42 4.77 70.10 0.33 3.75 16 11 Si 1.04 -5.64 10.48 68.60 0.72 -4.92 16 12 C -0.47 -1.88 8.41 113.37 0.95 -0.92 16 13 C -0.46 1.87 8.65 113.37 0.98 2.85 16 14 C -0.43 2.46 4.36 72.31 0.32 2.78 16 15 C 0.12 -0.01 5.79 86.58 0.50 0.49 16 16 C -0.08 -0.54 8.19 22.50 0.18 -0.35 16 17 C -0.16 -0.56 5.27 -19.81 -0.10 -0.66 16 18 C -0.06 -0.11 2.37 71.24 0.17 0.06 16 19 O -0.54 -0.11 12.88 -148.98 -1.92 -2.03 16 20 Si 0.96 4.42 25.49 68.60 1.75 6.17 16 21 H -0.26 -1.43 6.73 99.48 0.67 -0.76 16 22 H -0.26 -1.52 7.11 99.48 0.71 -0.82 16 23 H -0.27 -2.41 7.11 99.48 0.71 -1.70 16 24 C 0.16 0.22 6.66 22.63 0.15 0.37 16 25 O -0.49 0.26 11.84 -90.34 -1.07 -0.81 16 26 H 0.09 -0.88 8.14 -2.39 -0.02 -0.90 16 27 H 0.08 -0.79 8.08 -2.39 -0.02 -0.81 16 28 H 0.07 -0.32 7.52 -2.39 -0.02 -0.34 16 29 H 0.20 -1.30 1.45 -16.44 -0.02 -1.32 16 30 H 0.12 -1.49 6.71 -2.39 -0.02 -1.51 16 31 H 0.11 -0.92 5.31 -2.39 -0.01 -0.93 16 32 H 0.10 -1.19 7.22 -2.39 -0.02 -1.21 16 33 H 0.05 -0.12 5.63 -2.39 -0.01 -0.13 16 34 H 0.09 -0.74 8.00 -2.39 -0.02 -0.76 16 35 H 0.10 -1.32 8.00 -2.39 -0.02 -1.34 16 36 H 0.06 0.22 7.96 -2.39 -0.02 0.20 16 37 H 0.05 0.31 7.96 -2.39 -0.02 0.29 16 38 H 0.05 0.44 5.40 -2.39 -0.01 0.43 16 39 H 0.08 -0.50 7.96 -2.38 -0.02 -0.52 16 40 H 0.06 -0.16 7.96 -2.38 -0.02 -0.18 16 41 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 42 H 0.10 -0.58 7.93 -2.39 -0.02 -0.60 16 43 H 0.10 -1.09 7.30 -2.39 -0.02 -1.10 16 44 H 0.06 0.35 7.08 -2.39 -0.02 0.33 16 45 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 46 H 0.12 1.07 4.70 -2.91 -0.01 1.06 16 47 H 0.13 0.22 7.82 -2.39 -0.02 0.20 16 48 H 0.39 -2.30 8.70 -74.05 -0.64 -2.95 16 49 H 0.41 -3.24 9.06 -74.06 -0.67 -3.91 16 Total: 0.00 -20.95 367.50 3.38 -17.57 By element: Atomic # 1 Polarization: -20.05 SS G_CDS: 0.38 Total: -19.67 kcal Atomic # 6 Polarization: 10.25 SS G_CDS: 5.11 Total: 15.35 kcal Atomic # 7 Polarization: -0.35 SS G_CDS: -1.53 Total: -1.87 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: -3.05 Total: -12.63 kcal Atomic # 14 Polarization: -1.22 SS G_CDS: 2.47 Total: 1.25 kcal Total: -20.95 3.38 -17.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915400_13287732.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.774 kcal (2) G-P(sol) polarization free energy of solvation -20.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds