Wall clock time and date at job start Thu Mar 4 2021 18:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86297 * 109.00299 * 2 1 4 4 C 1.86975 * 109.01853 * 241.17115 * 2 1 3 5 5 C 1.54219 * 109.28481 * 199.05976 * 4 2 1 6 6 C 1.52375 * 108.06873 * 321.64216 * 5 4 2 7 7 N 1.45475 * 105.90242 * 102.23897 * 6 5 4 8 8 C 1.34775 * 116.97140 * 80.91290 * 7 6 5 9 9 O 1.21275 * 120.00324 * 180.02562 * 8 7 6 10 10 C 1.50699 * 119.99569 * 359.97438 * 8 7 6 11 11 C 1.50703 * 109.46888 * 180.02562 * 10 8 7 12 12 C 1.38274 * 119.93364 * 269.72536 * 11 10 8 13 13 C 1.38119 * 120.06751 * 179.72653 * 12 11 10 14 14 C 1.38830 * 119.93201 * 0.54733 * 13 12 11 15 15 N 1.40202 * 120.06325 * 179.74644 * 14 13 12 16 16 C 1.36566 * 125.66360 * 130.00882 * 15 14 13 17 17 C 1.34852 * 108.20105 * 180.02562 * 16 15 14 18 18 C 1.40943 * 107.46567 * 359.97438 * 17 16 15 19 19 C 1.34849 * 107.46744 * 359.73687 * 18 17 16 20 20 C 1.50700 * 125.90270 * 180.25197 * 19 18 17 21 21 O 1.42903 * 109.47325 * 150.19766 * 20 19 18 22 22 Si 1.86306 * 109.46846 * 30.20294 * 20 19 18 23 23 H 1.48504 * 109.46851 * 59.99830 * 22 20 19 24 24 H 1.48493 * 109.46999 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47229 * 300.00029 * 22 20 19 26 26 C 1.38827 * 119.86748 * 359.72857 * 14 13 12 27 27 C 1.38117 * 119.93524 * 359.97438 * 26 14 13 28 28 C 1.42439 * 126.06548 * 260.89129 * 7 6 5 29 29 C 1.55249 * 107.47762 * 64.25697 * 28 7 6 30 30 H 1.09001 * 109.47394 * 301.09372 * 1 2 3 31 31 H 1.09002 * 109.47253 * 61.09497 * 1 2 3 32 32 H 1.09005 * 109.47315 * 181.08987 * 1 2 3 33 33 H 1.09009 * 109.46921 * 159.75838 * 3 2 1 34 34 H 1.09000 * 109.47539 * 279.75734 * 3 2 1 35 35 H 1.08996 * 109.47284 * 39.76073 * 3 2 1 36 36 H 1.08995 * 109.51961 * 319.09543 * 4 2 1 37 37 H 1.09003 * 109.51945 * 79.21269 * 4 2 1 38 38 H 1.08997 * 109.96548 * 201.87997 * 5 4 2 39 39 H 1.09002 * 109.55129 * 81.16398 * 5 4 2 40 40 H 1.09000 * 110.18036 * 343.10629 * 6 5 4 41 41 H 1.09007 * 110.18089 * 221.37065 * 6 5 4 42 42 H 1.09004 * 109.47313 * 300.00027 * 10 8 7 43 43 H 1.08994 * 109.47187 * 60.00209 * 10 8 7 44 44 H 1.08003 * 119.96417 * 359.97438 * 12 11 10 45 45 H 1.08002 * 120.03722 * 180.29856 * 13 12 11 46 46 H 1.08008 * 125.90196 * 359.97438 * 16 15 14 47 47 H 1.07997 * 126.26483 * 179.97438 * 17 16 15 48 48 H 1.08001 * 126.26646 * 179.97438 * 18 17 16 49 49 H 1.08995 * 109.47564 * 270.20385 * 20 19 18 50 50 H 0.96695 * 114.00430 * 300.00903 * 21 20 19 51 51 H 1.08002 * 120.03068 * 180.02562 * 26 14 13 52 52 H 1.08001 * 119.96956 * 179.97438 * 27 26 14 53 53 H 1.08999 * 109.85430 * 183.75313 * 28 7 6 54 54 H 1.08999 * 109.85271 * 304.69501 * 28 7 6 55 55 H 1.09001 * 109.51447 * 57.37011 * 29 28 7 56 56 H 1.08996 * 109.51148 * 177.52267 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4696 1.7614 0.0000 4 6 2.4723 -0.8524 -1.5486 5 6 3.9391 -1.2848 -1.3485 6 6 4.6519 -0.1896 -0.5647 7 7 4.7482 -0.6764 0.8028 8 6 5.7455 -1.5412 1.0750 9 8 5.8765 -1.9820 2.1972 10 6 6.6971 -1.9611 -0.0154 11 6 7.7100 -2.9257 0.5458 12 6 8.8967 -2.4507 1.0732 13 6 9.8244 -3.3318 1.5934 14 6 9.5695 -4.6964 1.5761 15 7 10.5116 -5.5936 2.0986 16 6 10.2503 -6.5901 2.9952 17 6 11.4053 -7.2353 3.2562 18 6 12.4169 -6.6170 2.4941 19 6 11.8419 -5.6204 1.7909 20 6 12.5464 -4.6931 0.8344 21 8 11.6354 -4.2793 -0.1859 22 14 13.9879 -5.5812 0.0569 23 1 13.4958 -6.7726 -0.6804 24 1 14.6817 -4.6677 -0.8861 25 1 14.9345 -6.0113 1.1171 26 6 8.3796 -5.1707 1.0407 27 6 7.4530 -4.2843 0.5276 28 6 3.8869 -0.3238 1.8811 29 6 2.4670 -0.8469 1.5338 30 1 -0.3634 0.5307 0.8800 31 1 -0.3634 0.4967 -0.8997 32 1 -0.3634 -1.0275 0.0195 33 1 3.4997 1.7910 0.3556 34 1 2.4233 2.1618 -1.0128 35 1 1.8411 2.3622 0.6572 36 1 1.8569 -1.7297 -1.7475 37 1 2.4092 -0.1645 -2.3918 38 1 4.4227 -1.4193 -2.3159 39 1 3.9707 -2.2189 -0.7875 40 1 4.0722 0.7329 -0.5954 41 1 5.6477 -0.0211 -0.9748 42 1 6.1399 -2.4457 -0.8173 43 1 7.2098 -1.0832 -0.4083 44 1 9.0965 -1.3894 1.0820 45 1 10.7490 -2.9600 2.0096 46 1 9.2854 -6.8209 3.4221 47 1 11.5319 -8.0726 3.9266 48 1 13.4607 -6.8935 2.4738 49 1 12.9075 -3.8186 1.3755 50 1 11.2734 -5.0076 -0.7090 51 1 8.1784 -6.2317 1.0263 52 1 6.5274 -4.6527 0.1106 53 1 4.2377 -0.7887 2.8024 54 1 3.8650 0.7596 1.9983 55 1 2.5069 -1.9229 1.3639 56 1 1.7882 -0.6329 2.3593 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915400_13287746.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 18:17:28 Heat of formation + Delta-G solvation = 7.083161 kcal Electronic energy + Delta-G solvation = -34248.757779 eV Core-core repulsion = 30055.486205 eV Total energy + Delta-G solvation = -4193.271574 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 386.194 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.72577 -41.66526 -39.84930 -37.78532 -37.69542 -35.02300 -33.93362 -32.31137 -32.11831 -31.08357 -30.87248 -29.18002 -28.72944 -27.68904 -26.65826 -26.05976 -24.12605 -23.95830 -22.87046 -22.42605 -21.42579 -20.66331 -20.04517 -19.27805 -18.33787 -17.65092 -17.35606 -16.99669 -16.45289 -16.32790 -15.99461 -15.82306 -15.58750 -15.23784 -15.08850 -14.97983 -14.81291 -14.60903 -14.50278 -14.44435 -14.37155 -14.14572 -14.04157 -13.73940 -13.68682 -13.52987 -13.34733 -13.20758 -13.16987 -12.99685 -12.79375 -12.68061 -12.57751 -12.43863 -12.34699 -12.11753 -11.97238 -11.86995 -11.79392 -11.68233 -10.95831 -10.75154 -10.71642 -10.43242 -10.39913 -10.27904 -9.93325 -9.54381 -9.14895 -9.06689 0.01847 0.39579 0.98329 1.33174 1.51016 1.54635 1.60798 1.85985 1.90031 1.91345 1.93286 1.98353 2.08108 2.17087 2.69570 2.72195 3.36958 3.59967 3.67531 3.72272 3.78281 3.91820 4.01023 4.12457 4.14792 4.20912 4.28772 4.34841 4.40130 4.44870 4.47905 4.52273 4.55561 4.59902 4.64188 4.68542 4.71394 4.77855 4.80494 4.81485 4.82766 4.90048 4.94978 4.97806 4.99839 5.17116 5.19808 5.21125 5.24610 5.34723 5.37104 5.41050 5.51576 5.54407 5.58488 5.67074 5.79939 5.81807 5.90421 6.16344 6.32530 6.48905 6.54488 7.22487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.468 4.468 2 Si 1.064 2.936 3 C -0.469 4.469 4 C -0.415 4.415 5 C -0.131 4.131 6 C 0.056 3.944 7 N -0.597 5.597 8 C 0.501 3.499 9 O -0.581 6.581 10 C -0.102 4.102 11 C -0.065 4.065 12 C -0.098 4.098 13 C -0.092 4.092 14 C 0.111 3.889 15 N -0.393 5.393 16 C -0.020 4.020 17 C -0.200 4.200 18 C -0.211 4.211 19 C -0.020 4.020 20 C -0.059 4.059 21 O -0.542 6.542 22 Si 1.015 2.985 23 H -0.265 1.265 24 H -0.264 1.264 25 H -0.254 1.254 26 C -0.125 4.125 27 C -0.099 4.099 28 C 0.112 3.888 29 C -0.443 4.443 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.061 0.939 40 H 0.125 0.875 41 H 0.112 0.888 42 H 0.130 0.870 43 H 0.132 0.868 44 H 0.138 0.862 45 H 0.120 0.880 46 H 0.174 0.826 47 H 0.153 0.847 48 H 0.152 0.848 49 H 0.124 0.876 50 H 0.381 0.619 51 H 0.132 0.868 52 H 0.141 0.859 53 H 0.069 0.931 54 H 0.086 0.914 55 H 0.063 0.937 56 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.496 3.537 -6.457 7.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.574 4.574 2 Si 1.255 2.745 3 C -0.575 4.575 4 C -0.501 4.501 5 C -0.169 4.169 6 C -0.064 4.064 7 N -0.329 5.329 8 C 0.291 3.709 9 O -0.460 6.460 10 C -0.141 4.141 11 C -0.066 4.066 12 C -0.117 4.117 13 C -0.111 4.111 14 C 0.022 3.978 15 N -0.066 5.066 16 C -0.148 4.148 17 C -0.224 4.224 18 C -0.235 4.235 19 C -0.130 4.130 20 C -0.168 4.168 21 O -0.347 6.347 22 Si 0.836 3.164 23 H -0.189 1.189 24 H -0.189 1.189 25 H -0.177 1.177 26 C -0.144 4.144 27 C -0.117 4.117 28 C -0.011 4.011 29 C -0.527 4.527 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.080 0.920 40 H 0.142 0.858 41 H 0.130 0.870 42 H 0.148 0.852 43 H 0.150 0.850 44 H 0.156 0.844 45 H 0.138 0.862 46 H 0.191 0.809 47 H 0.171 0.829 48 H 0.170 0.830 49 H 0.141 0.859 50 H 0.229 0.771 51 H 0.150 0.850 52 H 0.159 0.841 53 H 0.088 0.912 54 H 0.104 0.896 55 H 0.082 0.918 56 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.864 3.700 -6.106 7.379 hybrid contribution -0.770 -0.699 0.770 1.294 sum -2.634 3.001 -5.336 6.665 Atomic orbital electron populations 1.26378 1.22638 1.04027 1.04388 0.78406 0.64815 0.66128 0.65185 1.26713 1.06088 1.19229 1.05454 1.26593 1.00078 1.07888 1.15565 1.21988 0.95685 0.97912 1.01352 1.22609 1.04938 0.99920 0.78940 1.47016 1.29681 1.44931 1.11254 1.21196 0.81843 0.78456 0.89411 1.90711 1.73670 1.56314 1.25349 1.20919 0.95223 1.00754 0.97165 1.19585 0.94610 0.94005 0.98394 1.21016 0.93169 1.00106 0.97366 1.20892 0.99711 0.91126 0.99365 1.17778 0.90564 0.88971 1.00524 1.41547 1.06469 1.25040 1.33580 1.22295 1.01244 0.93271 0.97998 1.21183 0.92176 1.03767 1.05290 1.21025 1.00398 0.99310 1.02815 1.21331 0.83777 1.02711 1.05212 1.24902 1.00090 1.02315 0.89522 1.86500 1.63255 1.37281 1.47690 0.84790 0.75043 0.77564 0.78959 1.18908 1.18870 1.17740 1.21086 0.93382 1.00707 0.99221 1.21024 0.99018 0.92457 0.99233 1.20871 0.89226 1.00622 0.90430 1.27200 1.00364 1.07445 1.17684 0.91651 0.90994 0.91888 0.90234 0.89901 0.91207 0.91012 0.89132 0.89140 0.92034 0.85760 0.87039 0.85185 0.84998 0.84400 0.86218 0.80895 0.82891 0.83019 0.85852 0.77066 0.85017 0.84102 0.91211 0.89631 0.91773 0.89921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 1.80 8.65 113.37 0.98 2.78 16 2 Si 1.06 -7.97 10.05 68.60 0.69 -7.28 16 3 C -0.47 3.61 7.38 113.37 0.84 4.45 16 4 C -0.42 3.34 5.08 72.40 0.37 3.71 16 5 C -0.13 1.12 4.75 30.80 0.15 1.26 16 6 C 0.06 -0.49 5.15 86.36 0.45 -0.05 16 7 N -0.60 1.25 2.19 -830.85 -1.82 -0.57 16 8 C 0.50 1.32 7.02 87.66 0.62 1.94 16 9 O -0.58 -7.48 15.03 -3.02 -0.05 -7.52 16 10 C -0.10 0.39 4.31 29.10 0.13 0.52 16 11 C -0.07 -0.11 4.37 -19.85 -0.09 -0.20 16 12 C -0.10 -0.33 9.69 22.25 0.22 -0.11 16 13 C -0.09 -0.53 7.67 22.38 0.17 -0.36 16 14 C 0.11 0.69 4.89 38.08 0.19 0.88 16 15 N -0.39 -2.74 2.87 -333.40 -0.96 -3.70 16 16 C -0.02 -0.13 11.12 83.18 0.93 0.79 16 17 C -0.20 -1.21 10.86 22.15 0.24 -0.97 16 18 C -0.21 -1.24 9.43 22.15 0.21 -1.03 16 19 C -0.02 -0.11 6.02 41.04 0.25 0.13 16 20 C -0.06 -0.08 2.29 71.24 0.16 0.08 16 21 O -0.54 -0.94 9.87 -148.98 -1.47 -2.41 16 22 Si 1.01 0.08 26.58 68.60 1.82 1.90 16 23 H -0.27 -0.56 7.11 99.48 0.71 0.15 16 24 H -0.26 -0.47 7.11 99.48 0.71 0.24 16 25 H -0.25 -0.17 6.82 99.48 0.68 0.51 16 26 C -0.12 -0.51 9.66 22.38 0.22 -0.29 16 27 C -0.10 -0.22 9.69 22.25 0.22 0.00 16 28 C 0.11 0.03 5.83 87.90 0.51 0.54 16 29 C -0.44 0.92 4.96 72.75 0.36 1.28 16 30 H 0.06 -0.20 7.96 -2.39 -0.02 -0.22 16 31 H 0.07 -0.31 7.96 -2.39 -0.02 -0.32 16 32 H 0.06 -0.17 7.96 -2.38 -0.02 -0.19 16 33 H 0.08 -0.64 4.91 -2.38 -0.01 -0.65 16 34 H 0.08 -0.75 7.96 -2.39 -0.02 -0.77 16 35 H 0.07 -0.44 7.96 -2.39 -0.02 -0.46 16 36 H 0.07 -0.47 7.97 -2.39 -0.02 -0.49 16 37 H 0.09 -0.90 7.97 -2.39 -0.02 -0.92 16 38 H 0.09 -1.03 8.14 -2.39 -0.02 -1.04 16 39 H 0.06 -0.35 6.98 -2.39 -0.02 -0.37 16 40 H 0.12 -1.32 2.84 -2.39 -0.01 -1.33 16 41 H 0.11 -1.45 6.47 -2.38 -0.02 -1.46 16 42 H 0.13 -1.11 6.55 -2.39 -0.02 -1.13 16 43 H 0.13 -1.22 7.18 -2.39 -0.02 -1.24 16 44 H 0.14 0.00 8.06 -2.91 -0.02 -0.03 16 45 H 0.12 0.71 7.68 -2.91 -0.02 0.69 16 46 H 0.17 0.55 8.06 -2.91 -0.02 0.53 16 47 H 0.15 0.39 8.06 -2.91 -0.02 0.36 16 48 H 0.15 0.42 6.70 -2.91 -0.02 0.40 16 49 H 0.12 -0.04 7.96 -2.39 -0.02 -0.05 16 50 H 0.38 -0.74 8.70 -74.06 -0.64 -1.39 16 51 H 0.13 0.28 8.06 -2.91 -0.02 0.26 16 52 H 0.14 -0.22 8.06 -2.91 -0.02 -0.24 16 53 H 0.07 0.48 6.55 -2.39 -0.02 0.47 16 54 H 0.09 -0.27 6.56 -2.39 -0.02 -0.29 16 55 H 0.06 0.05 7.96 -2.39 -0.02 0.03 16 56 H 0.08 -0.17 7.96 -2.39 -0.02 -0.19 16 Total: 0.00 -19.67 425.63 6.28 -13.40 By element: Atomic # 1 Polarization: -10.12 SS G_CDS: 0.96 Total: -9.16 kcal Atomic # 6 Polarization: 8.25 SS G_CDS: 7.09 Total: 15.35 kcal Atomic # 7 Polarization: -1.49 SS G_CDS: -2.78 Total: -4.27 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: -1.52 Total: -9.94 kcal Atomic # 14 Polarization: -7.89 SS G_CDS: 2.51 Total: -5.38 kcal Total: -19.67 6.28 -13.40 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915400_13287746.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.481 kcal (2) G-P(sol) polarization free energy of solvation -19.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds