Wall clock time and date at job start Thu Mar 4 2021 18:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36419 * 125.79908 * 2 1 4 4 C 1.47380 * 127.19326 * 0.05667 * 3 2 1 5 5 O 1.21615 * 120.00037 * 352.49653 * 4 3 2 6 6 N 1.34773 * 119.99826 * 172.49385 * 4 3 2 7 7 C 1.46277 * 122.82353 * 4.25808 * 6 4 3 8 8 C 1.45973 * 114.57817 * 79.18900 * 7 6 4 9 9 C 1.55342 * 108.92252 * 60.36224 * 8 7 6 10 10 Si 1.84160 * 109.12315 * 290.54942 * 9 8 7 11 11 C 1.86297 * 108.84443 * 207.39176 * 10 9 8 12 12 C 1.86298 * 108.84363 * 325.85832 * 10 9 8 13 13 C 1.88550 * 112.65807 * 86.57215 * 10 9 8 14 14 C 1.44488 * 122.81804 * 183.96522 * 6 4 3 15 15 C 1.47022 * 105.61530 * 180.02562 * 3 2 1 16 16 C 1.34177 * 105.95257 * 359.97438 * 15 3 2 17 17 C 1.50702 * 125.43591 * 179.97438 * 16 15 3 18 18 O 1.42906 * 109.47043 * 65.00592 * 17 16 15 19 19 Si 1.86301 * 109.46934 * 185.00057 * 17 16 15 20 20 H 1.48498 * 109.47272 * 179.97438 * 19 17 16 21 21 H 1.48498 * 109.47471 * 300.00077 * 19 17 16 22 22 H 1.48507 * 109.47171 * 60.00321 * 19 17 16 23 23 O 1.33654 * 125.80169 * 180.33234 * 2 1 3 24 24 H 1.08997 * 109.47171 * 89.99585 * 1 2 3 25 25 H 1.08998 * 109.47090 * 210.00206 * 1 2 3 26 26 H 1.09006 * 109.47235 * 329.99722 * 1 2 3 27 27 H 1.09001 * 108.46150 * 200.51282 * 7 6 4 28 28 H 1.08997 * 108.45686 * 318.03511 * 7 6 4 29 29 H 1.08999 * 109.55770 * 180.19033 * 8 7 6 30 30 H 1.08999 * 109.56329 * 300.41594 * 8 7 6 31 31 H 1.09005 * 109.53065 * 50.43846 * 9 8 7 32 32 H 1.08994 * 109.53108 * 170.58602 * 9 8 7 33 33 H 1.08996 * 109.47153 * 60.00142 * 11 10 9 34 34 H 1.09004 * 109.46918 * 179.97438 * 11 10 9 35 35 H 1.09001 * 109.47145 * 300.00254 * 11 10 9 36 36 H 1.09000 * 109.47189 * 39.72256 * 12 10 9 37 37 H 1.09007 * 109.46655 * 159.71890 * 12 10 9 38 38 H 1.08995 * 109.47086 * 279.71413 * 12 10 9 39 39 H 1.09002 * 110.07683 * 80.92910 * 13 10 9 40 40 H 1.08997 * 110.07782 * 202.41237 * 13 10 9 41 41 H 1.08997 * 109.89674 * 50.59695 * 14 6 4 42 42 H 1.09002 * 109.89387 * 171.70892 * 14 6 4 43 43 H 1.08001 * 127.02480 * 180.02562 * 15 3 2 44 44 H 1.08997 * 109.47531 * 305.00178 * 17 16 15 45 45 H 0.96694 * 113.99800 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.1065 0.0000 4 6 1.8739 2.5158 0.0012 5 8 0.6974 2.7919 -0.1353 6 7 2.7835 3.4986 0.1535 7 6 4.2216 3.2428 0.2315 8 6 4.8674 3.0090 -1.0566 9 6 4.6805 4.2664 -1.9494 10 14 2.9083 4.4067 -2.4304 11 6 2.7961 5.3045 -4.0589 12 6 2.2039 2.6946 -2.6382 13 6 1.8798 5.3346 -1.1512 14 6 2.4205 4.8939 0.2473 15 6 3.6849 0.5992 -0.0006 16 6 3.5859 -0.7389 -0.0004 17 6 4.7460 -1.7009 -0.0014 18 8 5.4772 -1.5666 1.2191 19 14 4.1069 -3.4442 -0.1536 20 1 5.2499 -4.3922 -0.1553 21 1 3.2143 -3.7463 0.9941 22 1 3.3469 -3.5839 -1.4219 23 8 2.2889 -1.0840 -0.0063 24 1 -0.3633 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5139 27 1 4.6993 4.0995 0.7067 28 1 4.3827 2.3668 0.8598 29 1 5.9308 2.8250 -0.9035 30 1 4.4134 2.1446 -1.5410 31 1 4.9786 5.1555 -1.3937 32 1 5.2956 4.1726 -2.8443 33 1 3.3418 4.7465 -4.8198 34 1 1.7504 5.3928 -4.3537 35 1 3.2304 6.2989 -3.9563 36 1 2.5957 2.0432 -1.8570 37 1 1.1172 2.7375 -2.5643 38 1 2.4864 2.3015 -3.6147 39 1 2.0047 6.4098 -1.2793 40 1 0.8281 5.0660 -1.2505 41 1 1.6412 5.0248 0.9980 42 1 3.2953 5.4878 0.5122 43 1 4.5928 1.1841 -0.0004 44 1 5.4011 -1.4792 -0.8438 45 1 6.2401 -2.1568 1.2874 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915400_13308374.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 18:17:59 Heat of formation + Delta-G solvation = -50.404930 kcal Electronic energy + Delta-G solvation = -26205.295341 eV Core-core repulsion = 22735.792035 eV Total energy + Delta-G solvation = -3469.503307 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 311.151 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.88737 -41.30849 -38.11313 -37.80869 -34.85281 -33.66550 -33.20502 -31.06633 -29.67391 -29.04978 -28.39743 -27.26949 -25.66863 -24.88336 -23.41242 -22.59411 -21.49579 -19.54168 -18.67798 -18.25106 -17.54255 -17.22333 -17.03221 -16.51249 -16.15358 -16.00329 -15.23668 -15.06982 -14.75869 -14.70924 -14.62046 -14.14527 -14.06691 -13.92524 -13.85858 -13.77821 -13.43417 -13.31499 -13.23123 -13.05259 -12.84399 -12.61994 -12.58676 -12.26321 -12.21049 -12.12495 -12.01204 -11.65799 -11.00829 -10.85205 -10.63334 -10.44169 -10.42432 -10.36985 -9.78493 -9.46203 0.21575 0.82730 1.04436 1.28582 1.48645 1.65281 1.80550 1.93426 1.93938 2.02026 2.09416 2.25070 2.76933 3.22546 3.54613 3.67441 3.73320 3.90726 4.11534 4.19303 4.25263 4.30578 4.41838 4.43061 4.51120 4.59006 4.62860 4.66253 4.72947 4.73485 4.75077 4.76962 4.80139 4.88140 4.98546 5.01093 5.08601 5.11363 5.22667 5.29092 5.38336 5.49180 5.51727 5.57735 5.71477 5.91769 6.41892 6.78160 7.13693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.069 3.931 3 C -0.256 4.256 4 C 0.605 3.395 5 O -0.563 6.563 6 N -0.604 5.604 7 C 0.074 3.926 8 C -0.146 4.146 9 C -0.400 4.400 10 Si 1.043 2.957 11 C -0.463 4.463 12 C -0.482 4.482 13 C -0.434 4.434 14 C 0.118 3.882 15 C -0.162 4.162 16 C -0.030 4.030 17 C -0.033 4.033 18 O -0.555 6.555 19 Si 0.972 3.028 20 H -0.227 1.227 21 H -0.285 1.285 22 H -0.270 1.270 23 O -0.186 6.186 24 H 0.095 0.905 25 H 0.094 0.906 26 H 0.098 0.902 27 H 0.112 0.888 28 H 0.086 0.914 29 H 0.111 0.889 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.044 0.956 38 H 0.059 0.941 39 H 0.091 0.909 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.123 0.877 43 H 0.204 0.796 44 H 0.133 0.867 45 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.168 -0.218 -0.159 8.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.016 3.984 3 C -0.261 4.261 4 C 0.397 3.603 5 O -0.444 6.444 6 N -0.337 5.337 7 C -0.047 4.047 8 C -0.184 4.184 9 C -0.488 4.488 10 Si 1.234 2.766 11 C -0.569 4.569 12 C -0.585 4.585 13 C -0.519 4.519 14 C -0.004 4.004 15 C -0.181 4.181 16 C -0.078 4.078 17 C -0.144 4.144 18 O -0.366 6.366 19 Si 0.796 3.204 20 H -0.149 1.149 21 H -0.210 1.210 22 H -0.194 1.194 23 O -0.084 6.084 24 H 0.113 0.887 25 H 0.112 0.888 26 H 0.116 0.884 27 H 0.130 0.870 28 H 0.104 0.896 29 H 0.129 0.871 30 H 0.087 0.913 31 H 0.115 0.885 32 H 0.106 0.894 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.064 0.936 38 H 0.078 0.922 39 H 0.109 0.891 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.141 0.859 43 H 0.220 0.780 44 H 0.150 0.850 45 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 6.691 -0.806 -0.152 6.741 hybrid contribution -0.268 0.003 -0.217 0.345 sum 6.423 -0.803 -0.370 6.483 Atomic orbital electron populations 1.20642 0.82965 1.05265 1.04948 1.23123 0.94677 0.83091 0.97480 1.21227 0.94317 0.93610 1.16911 1.16899 0.84656 0.83965 0.74768 1.90757 1.18193 1.84062 1.51360 1.47361 1.07526 1.06829 1.71964 1.20950 0.78995 1.05461 0.99344 1.21078 1.02953 0.98694 0.95691 1.26155 1.17281 1.00884 1.04518 0.78673 0.67815 0.64784 0.65340 1.26334 1.03695 1.08851 1.17997 1.27227 1.05910 1.21036 1.04362 1.27577 1.08194 1.08424 1.07678 1.21641 1.01817 0.80065 0.96894 1.23696 0.97328 0.93286 1.03749 1.21819 0.82106 0.95506 1.08322 1.23788 0.91677 1.06825 0.92060 1.86424 1.46833 1.66959 1.36432 0.85324 0.80563 0.74975 0.79502 1.14918 1.21020 1.19435 1.83634 1.17281 1.35534 1.71940 0.88682 0.88755 0.88394 0.86975 0.89578 0.87085 0.91286 0.88534 0.89378 0.91358 0.92621 0.90578 0.90134 0.93625 0.92181 0.89058 0.92517 0.92733 0.85903 0.77991 0.84971 0.73813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.40 9.82 71.24 0.70 0.30 16 2 C 0.07 0.56 7.37 25.26 0.19 0.74 16 3 C -0.26 -1.81 4.46 -18.99 -0.08 -1.90 16 4 C 0.60 4.90 4.15 86.65 0.36 5.26 16 5 O -0.56 -7.93 13.34 -4.08 -0.05 -7.99 16 6 N -0.60 -0.90 1.62 -837.27 -1.36 -2.26 16 7 C 0.07 -0.37 4.42 84.26 0.37 0.00 16 8 C -0.15 0.96 4.22 29.24 0.12 1.09 16 9 C -0.40 2.47 4.72 72.79 0.34 2.81 16 10 Si 1.04 -1.02 9.98 68.60 0.68 -0.34 16 11 C -0.46 -0.36 8.65 113.37 0.98 0.62 16 12 C -0.48 -2.72 6.83 113.37 0.77 -1.94 16 13 C -0.43 -0.75 5.01 73.12 0.37 -0.38 16 14 C 0.12 0.01 5.74 87.90 0.50 0.51 16 15 C -0.16 -0.38 7.43 23.65 0.18 -0.20 16 16 C -0.03 -0.11 6.22 24.76 0.15 0.05 16 17 C -0.03 0.12 2.96 71.24 0.21 0.33 16 18 O -0.56 2.36 12.86 -148.98 -1.92 0.45 16 19 Si 0.97 -1.12 27.37 68.60 1.88 0.75 16 20 H -0.23 1.01 7.11 99.48 0.71 1.72 16 21 H -0.28 -1.54 7.11 99.48 0.71 -0.83 16 22 H -0.27 -0.68 7.11 99.48 0.71 0.02 16 23 O -0.19 -1.42 8.90 4.42 0.04 -1.38 16 24 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 25 H 0.09 0.11 8.14 -2.39 -0.02 0.09 16 26 H 0.10 0.70 6.66 -2.38 -0.02 0.68 16 27 H 0.11 -1.13 7.17 -2.39 -0.02 -1.15 16 28 H 0.09 -0.41 5.01 -2.39 -0.01 -0.42 16 29 H 0.11 -1.22 8.14 -2.39 -0.02 -1.24 16 30 H 0.07 -0.26 4.14 -2.39 -0.01 -0.27 16 31 H 0.10 -0.88 7.90 -2.38 -0.02 -0.90 16 32 H 0.09 -0.61 7.95 -2.39 -0.02 -0.63 16 33 H 0.07 0.03 7.96 -2.39 -0.02 0.01 16 34 H 0.05 0.17 7.96 -2.38 -0.02 0.15 16 35 H 0.08 -0.08 7.96 -2.39 -0.02 -0.10 16 36 H 0.08 0.44 2.00 -2.39 0.00 0.44 16 37 H 0.04 0.49 7.24 -2.38 -0.02 0.48 16 38 H 0.06 0.29 7.96 -2.39 -0.02 0.27 16 39 H 0.09 -0.14 8.00 -2.39 -0.02 -0.16 16 40 H 0.06 0.46 7.46 -2.39 -0.02 0.44 16 41 H 0.05 0.20 8.14 -2.39 -0.02 0.18 16 42 H 0.12 -0.89 7.17 -2.39 -0.02 -0.90 16 43 H 0.20 -0.74 3.77 -2.91 -0.01 -0.75 16 44 H 0.13 -1.39 7.96 -2.39 -0.02 -1.41 16 45 H 0.41 -5.84 8.74 -74.06 -0.65 -6.49 16 Total: 0.00 -19.47 333.00 5.56 -13.91 By element: Atomic # 1 Polarization: -11.56 SS G_CDS: 1.12 Total: -10.43 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: 5.17 Total: 7.29 kcal Atomic # 7 Polarization: -0.90 SS G_CDS: -1.36 Total: -2.26 kcal Atomic # 8 Polarization: -6.99 SS G_CDS: -1.93 Total: -8.92 kcal Atomic # 14 Polarization: -2.15 SS G_CDS: 2.56 Total: 0.42 kcal Total: -19.47 5.56 -13.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915400_13308374.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.498 kcal (2) G-P(sol) polarization free energy of solvation -19.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds