Wall clock time and date at job start Thu Mar 4 2021 18:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86296 * 109.44068 * 2 1 4 4 C 1.88797 * 109.44074 * 119.92528 * 2 1 3 5 5 C 1.49872 * 108.19981 * 50.78101 * 4 2 1 6 6 C 1.54329 * 114.58697 * 84.44547 * 5 4 2 7 7 N 1.47117 * 117.93967 * 314.27744 * 6 5 4 8 8 C 1.34771 * 118.23467 * 134.71948 * 7 6 5 9 9 O 1.21596 * 120.00142 * 345.37025 * 8 7 6 10 10 C 1.47558 * 120.00414 * 165.37026 * 8 7 6 11 11 C 1.39831 * 120.00177 * 48.20824 * 10 8 7 12 12 C 1.36563 * 120.00407 * 179.74483 * 11 10 8 13 13 C 1.39826 * 119.99410 * 0.55800 * 12 11 10 14 14 C 1.47565 * 119.99610 * 179.71866 * 13 12 11 15 15 C 1.34978 * 125.27492 * 359.97438 * 14 13 12 16 16 C 1.37798 * 114.70070 * 179.97438 * 15 14 13 17 17 C 1.33741 * 115.08026 * 0.02562 * 16 15 14 18 18 C 1.50699 * 125.11892 * 180.02562 * 17 16 15 19 19 O 1.42892 * 109.47535 * 65.00103 * 18 17 16 20 20 Si 1.86299 * 109.47174 * 185.00266 * 18 17 16 21 21 H 1.48495 * 109.47472 * 59.99933 * 20 18 17 22 22 H 1.48507 * 109.47217 * 180.02562 * 20 18 17 23 23 H 1.48508 * 109.47054 * 299.99726 * 20 18 17 24 24 S 1.75863 * 109.76276 * 359.77074 * 17 16 15 25 25 C 1.39817 * 120.00465 * 359.69817 * 13 12 11 26 26 C 1.36561 * 120.00028 * 0.02562 * 25 13 12 27 27 C 1.42779 * 123.53322 * 314.69306 * 7 6 5 28 28 C 1.54960 * 107.20458 * 96.96968 * 27 7 6 29 29 H 1.08994 * 109.47346 * 300.07554 * 1 2 3 30 30 H 1.08996 * 109.46919 * 60.07694 * 1 2 3 31 31 H 1.09001 * 109.46913 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47402 * 179.97438 * 3 2 1 33 33 H 1.09006 * 109.46608 * 299.92484 * 3 2 1 34 34 H 1.08998 * 109.47578 * 59.92124 * 3 2 1 35 35 H 1.09002 * 109.72793 * 170.47489 * 4 2 1 36 36 H 1.09005 * 109.72400 * 291.09292 * 4 2 1 37 37 H 1.09002 * 108.45589 * 205.85655 * 5 4 2 38 38 H 1.09006 * 108.45068 * 323.19499 * 5 4 2 39 39 H 1.08997 * 107.77059 * 192.11048 * 6 5 4 40 40 H 1.09010 * 107.68825 * 76.37568 * 6 5 4 41 41 H 1.08009 * 119.99586 * 0.02675 * 11 10 8 42 42 H 1.07999 * 120.00350 * 180.27721 * 12 11 10 43 43 H 1.07996 * 122.64920 * 359.94644 * 15 14 13 44 44 H 1.08001 * 122.45965 * 179.97438 * 16 15 14 45 45 H 1.09005 * 109.47278 * 304.99603 * 18 17 16 46 46 H 0.96703 * 114.00153 * 59.99816 * 19 18 17 47 47 H 1.08000 * 120.00003 * 180.02562 * 25 13 12 48 48 H 1.08002 * 119.99819 * 179.97438 * 26 25 13 49 49 H 1.08995 * 109.90365 * 337.54244 * 27 7 6 50 50 H 1.08999 * 109.90598 * 216.39572 * 27 7 6 51 51 H 1.09002 * 109.03846 * 163.34976 * 28 27 7 52 52 H 1.08999 * 109.04503 * 44.46622 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4831 1.7567 0.0000 4 6 2.4914 -0.8882 1.5430 5 6 1.7983 -2.2138 1.6349 6 6 2.4535 -3.3397 0.8075 7 7 2.8528 -3.0359 -0.5755 8 6 4.0678 -3.4435 -0.9925 9 8 4.9005 -3.8012 -0.1818 10 6 4.3878 -3.4557 -2.4329 11 6 4.1055 -2.3359 -3.2214 12 6 4.4064 -2.3452 -4.5534 13 6 4.9861 -3.4788 -5.1312 14 6 5.3056 -3.4912 -6.5718 15 6 5.0840 -2.4716 -7.4281 16 6 5.4673 -2.7182 -8.7285 17 6 5.9984 -3.9267 -8.9435 18 6 6.4926 -4.4322 -10.2744 19 8 7.6145 -3.6526 -10.6933 20 14 7.0027 -6.2165 -10.1105 21 1 5.8369 -7.0267 -9.6754 22 1 7.4904 -6.7144 -11.4219 23 1 8.0884 -6.3304 -9.1036 24 16 6.0398 -4.8345 -7.4379 25 6 5.2635 -4.6005 -4.3439 26 6 4.9678 -4.5892 -3.0108 27 6 2.0222 -2.3329 -1.4998 28 6 2.4634 -0.8476 -1.4747 29 1 -0.3634 0.5150 0.8892 30 1 -0.3633 0.5126 -0.8906 31 1 -0.3633 -1.0277 0.0005 32 1 3.5730 1.7574 0.0005 33 1 2.1205 2.2699 -0.8907 34 1 2.1183 2.2709 0.8892 35 1 3.5680 -1.0404 1.4671 36 1 2.2656 -0.2928 2.4277 37 1 1.7767 -2.5201 2.6808 38 1 0.7702 -2.0899 1.2944 39 1 1.7572 -4.1777 0.7759 40 1 3.3422 -3.6714 1.3447 41 1 3.6535 -1.4619 -2.7759 42 1 4.1924 -1.4786 -5.1614 43 1 4.6409 -1.5367 -7.1186 44 1 5.3470 -1.9895 -9.5164 45 1 5.6958 -4.3486 -11.0135 46 1 8.3631 -3.6803 -10.0817 47 1 5.7117 -5.4760 -4.7902 48 1 5.1818 -5.4558 -2.4028 49 1 0.9782 -2.4152 -1.1975 50 1 2.1528 -2.7420 -2.5016 51 1 2.0707 -0.3450 -2.3586 52 1 3.5522 -0.7996 -1.4941 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915400_13308390.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 18:18:10 Heat of formation + Delta-G solvation = -19.097355 kcal Electronic energy + Delta-G solvation = -31293.194654 eV Core-core repulsion = 27280.677443 eV Total energy + Delta-G solvation = -4012.517210 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 389.139 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.91627 -40.02783 -39.02601 -37.73039 -37.38865 -34.86930 -33.25443 -32.46731 -31.24758 -30.49396 -28.96387 -28.32017 -27.85957 -26.66424 -24.88486 -24.33774 -23.73628 -23.42903 -22.07809 -20.31028 -20.19092 -18.93817 -18.55771 -17.77146 -17.59818 -16.90237 -16.64960 -16.38269 -16.19904 -16.07625 -15.67601 -15.22099 -15.18771 -15.00492 -14.86002 -14.58212 -14.43644 -14.28110 -14.00935 -13.91078 -13.78559 -13.59936 -13.43843 -13.40117 -13.32812 -13.11801 -13.10476 -13.02092 -12.73922 -12.59089 -12.56643 -12.40459 -12.30591 -12.21886 -11.95356 -11.67732 -11.48815 -11.10262 -10.76495 -10.68598 -10.53147 -10.45543 -10.19379 -10.12083 -9.67434 -9.58410 -9.01937 -0.83190 0.30842 0.33901 0.36190 0.73131 1.10500 1.34011 1.44836 1.47945 1.77441 1.84220 1.87342 1.95830 2.01328 2.06321 2.71788 2.75084 3.36347 3.44441 3.53538 3.72262 3.79892 3.84436 3.88577 4.07572 4.14534 4.22383 4.30588 4.35979 4.42117 4.44020 4.52859 4.56365 4.61763 4.65300 4.69547 4.82752 4.84553 4.90792 4.91947 4.94117 4.94248 4.98301 4.99267 5.03480 5.12276 5.24043 5.25365 5.27041 5.28015 5.33797 5.49644 5.53483 5.60494 5.63537 5.74311 5.77038 6.26940 6.59543 6.99250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.457 4.457 2 Si 1.091 2.909 3 C -0.469 4.469 4 C -0.426 4.426 5 C -0.113 4.113 6 C 0.101 3.899 7 N -0.587 5.587 8 C 0.554 3.446 9 O -0.579 6.579 10 C -0.142 4.142 11 C -0.106 4.106 12 C -0.105 4.105 13 C -0.001 4.001 14 C -0.152 4.152 15 C -0.116 4.116 16 C -0.103 4.103 17 C -0.219 4.219 18 C -0.031 4.031 19 O -0.544 6.544 20 Si 0.912 3.088 21 H -0.246 1.246 22 H -0.239 1.239 23 H -0.243 1.243 24 S 0.081 5.919 25 C -0.127 4.127 26 C -0.074 4.074 27 C 0.105 3.895 28 C -0.483 4.483 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.052 0.948 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.061 0.939 41 H 0.187 0.813 42 H 0.162 0.838 43 H 0.169 0.831 44 H 0.162 0.838 45 H 0.140 0.860 46 H 0.389 0.611 47 H 0.130 0.870 48 H 0.125 0.875 49 H 0.109 0.891 50 H 0.094 0.906 51 H 0.125 0.875 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.895 3.788 -2.905 7.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.564 4.564 2 Si 1.281 2.719 3 C -0.575 4.575 4 C -0.508 4.508 5 C -0.151 4.151 6 C -0.021 4.021 7 N -0.317 5.317 8 C 0.343 3.657 9 O -0.460 6.460 10 C -0.146 4.146 11 C -0.123 4.123 12 C -0.124 4.124 13 C -0.003 4.003 14 C -0.269 4.269 15 C -0.147 4.147 16 C -0.133 4.133 17 C -0.337 4.337 18 C -0.144 4.144 19 O -0.351 6.351 20 Si 0.734 3.266 21 H -0.170 1.170 22 H -0.162 1.162 23 H -0.166 1.166 24 S 0.348 5.652 25 C -0.146 4.146 26 C -0.093 4.093 27 C -0.018 4.018 28 C -0.567 4.567 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.094 0.906 40 H 0.080 0.920 41 H 0.203 0.797 42 H 0.179 0.821 43 H 0.187 0.813 44 H 0.179 0.821 45 H 0.158 0.842 46 H 0.239 0.761 47 H 0.148 0.852 48 H 0.143 0.857 49 H 0.127 0.873 50 H 0.112 0.888 51 H 0.143 0.857 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.103 1.334 -2.502 5.838 hybrid contribution 0.306 1.216 0.436 1.327 sum -4.797 2.550 -2.066 5.812 Atomic orbital electron populations 1.26282 1.20460 1.04870 1.04820 0.77667 0.66189 0.64104 0.63961 1.26364 1.05898 1.20639 1.04633 1.26011 1.04019 1.03371 1.17429 1.20992 1.00315 0.93872 0.99899 1.21785 1.00804 0.98421 0.81090 1.47055 1.15793 1.56154 1.12748 1.18745 0.82047 0.76414 0.88451 1.90778 1.48367 1.50444 1.56384 1.19966 1.04553 0.97262 0.92810 1.22536 0.96900 0.99148 0.93742 1.21235 0.98180 0.97859 0.95173 1.18455 0.97531 0.94810 0.89522 1.23071 1.08900 0.98466 0.96439 1.20688 1.01693 1.00136 0.92134 1.20234 0.98743 0.96612 0.97738 1.25174 1.10208 0.99556 0.98715 1.24282 0.92268 1.05184 0.92707 1.86511 1.25932 1.71910 1.50757 0.86021 0.82193 0.75709 0.82667 1.16972 1.16212 1.16586 1.84400 1.60967 1.18730 1.01053 1.20957 1.01524 0.98474 0.93616 1.20819 0.95916 0.97678 0.94899 1.21420 0.96050 0.90224 0.94088 1.27153 1.06807 1.02867 1.19869 0.91508 0.90411 0.90549 0.92129 0.90585 0.91590 0.92863 0.90382 0.90737 0.89848 0.90626 0.91997 0.79680 0.82092 0.81336 0.82081 0.84204 0.76121 0.85250 0.85692 0.87274 0.88818 0.85674 0.89670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 3.75 8.35 113.37 0.95 4.70 16 2 Si 1.09 -8.77 10.48 68.60 0.72 -8.05 16 3 C -0.47 2.19 8.65 113.37 0.98 3.17 16 4 C -0.43 0.99 4.83 70.98 0.34 1.34 16 5 C -0.11 0.34 5.32 30.04 0.16 0.50 16 6 C 0.10 0.10 6.00 86.71 0.52 0.62 16 7 N -0.59 -0.60 2.45 -826.44 -2.02 -2.62 16 8 C 0.55 4.34 6.73 86.70 0.58 4.92 16 9 O -0.58 -9.74 16.23 -4.02 -0.07 -9.81 16 10 C -0.14 -0.65 5.10 -20.05 -0.10 -0.76 16 11 C -0.11 0.12 7.25 22.26 0.16 0.28 16 12 C -0.10 0.22 9.48 22.26 0.21 0.43 16 13 C 0.00 0.00 5.88 -20.05 -0.12 -0.12 16 14 C -0.15 -0.19 6.37 23.98 0.15 -0.03 16 15 C -0.12 0.23 9.64 21.42 0.21 0.43 16 16 C -0.10 0.17 10.03 21.14 0.21 0.38 16 17 C -0.22 0.06 5.71 24.66 0.14 0.20 16 18 C -0.03 0.06 2.96 71.24 0.21 0.27 16 19 O -0.54 0.56 12.88 -148.98 -1.92 -1.36 16 20 Si 0.91 -0.49 26.25 68.60 1.80 1.31 16 21 H -0.25 -0.31 7.11 99.48 0.71 0.39 16 22 H -0.24 -0.30 7.11 99.48 0.71 0.41 16 23 H -0.24 -0.15 7.11 99.48 0.71 0.56 16 24 S 0.08 0.16 19.48 -56.49 -1.10 -0.94 16 25 C -0.13 -0.47 9.54 22.26 0.21 -0.26 16 26 C -0.07 -0.41 9.65 22.26 0.21 -0.20 16 27 C 0.10 -0.62 5.08 87.73 0.45 -0.17 16 28 C -0.48 4.01 2.68 72.65 0.19 4.21 16 29 H 0.07 -0.45 7.96 -2.39 -0.02 -0.47 16 30 H 0.08 -0.70 7.96 -2.39 -0.02 -0.71 16 31 H 0.08 -0.70 6.53 -2.39 -0.02 -0.71 16 32 H 0.06 -0.17 7.96 -2.39 -0.02 -0.19 16 33 H 0.08 -0.45 7.96 -2.38 -0.02 -0.47 16 34 H 0.06 -0.24 7.96 -2.39 -0.02 -0.26 16 35 H 0.05 0.13 7.90 -2.39 -0.02 0.12 16 36 H 0.08 -0.22 7.99 -2.38 -0.02 -0.24 16 37 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 38 H 0.08 -0.60 5.94 -2.38 -0.01 -0.62 16 39 H 0.08 -0.13 8.14 -2.39 -0.02 -0.14 16 40 H 0.06 0.44 6.70 -2.38 -0.02 0.42 16 41 H 0.19 -1.10 2.73 -2.91 -0.01 -1.11 16 42 H 0.16 -1.32 6.74 -2.91 -0.02 -1.34 16 43 H 0.17 -1.23 6.88 -2.91 -0.02 -1.25 16 44 H 0.16 -0.73 8.06 -2.91 -0.02 -0.76 16 45 H 0.14 -0.67 7.96 -2.38 -0.02 -0.69 16 46 H 0.39 -2.58 8.70 -74.06 -0.64 -3.22 16 47 H 0.13 0.30 7.26 -2.91 -0.02 0.28 16 48 H 0.13 0.75 8.06 -2.91 -0.02 0.72 16 49 H 0.11 -1.10 7.13 -2.39 -0.02 -1.11 16 50 H 0.09 -0.57 5.41 -2.39 -0.01 -0.59 16 51 H 0.13 -1.70 7.81 -2.39 -0.02 -1.72 16 52 H 0.09 -0.49 5.73 -2.39 -0.01 -0.50 16 Total: 0.00 -19.14 411.99 4.15 -14.98 By element: Atomic # 1 Polarization: -14.49 SS G_CDS: 1.06 Total: -13.43 kcal Atomic # 6 Polarization: 14.24 SS G_CDS: 5.68 Total: 19.92 kcal Atomic # 7 Polarization: -0.60 SS G_CDS: -2.02 Total: -2.62 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: -1.98 Total: -11.17 kcal Atomic # 14 Polarization: -9.26 SS G_CDS: 2.52 Total: -6.74 kcal Atomic # 16 Polarization: 0.16 SS G_CDS: -1.10 Total: -0.94 kcal Total: -19.14 4.15 -14.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915400_13308390.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.112 kcal (2) G-P(sol) polarization free energy of solvation -19.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds