Wall clock time and date at job start Thu Mar 4 2021 18:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86307 * 1 3 3 C 1.86304 * 108.81669 * 2 1 4 4 C 1.84152 * 108.84536 * 118.48282 * 2 1 3 5 5 C 1.55339 * 109.12637 * 207.39544 * 4 2 1 6 6 C 1.45983 * 108.92188 * 290.55259 * 5 4 2 7 7 N 1.46267 * 114.57707 * 60.35198 * 6 5 4 8 8 C 1.34776 * 122.81946 * 79.19977 * 7 6 5 9 9 O 1.21591 * 119.99870 * 4.37441 * 8 7 6 10 10 C 1.47539 * 120.00545 * 184.37384 * 8 7 6 11 11 C 1.39674 * 120.18734 * 353.54030 * 10 8 7 12 12 C 1.37822 * 119.90808 * 179.73099 * 11 10 8 13 13 C 1.38511 * 120.30167 * 0.24439 * 12 11 10 14 14 C 1.50694 * 119.80827 * 180.02562 * 13 12 11 15 15 O 1.42899 * 109.47358 * 119.99966 * 14 13 12 16 16 Si 1.86302 * 109.46972 * 359.97438 * 14 13 12 17 17 H 1.48496 * 109.47187 * 60.00390 * 16 14 13 18 18 H 1.48500 * 109.47069 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47195 * 300.00297 * 16 14 13 20 20 C 1.38100 * 120.38394 * 359.97438 * 13 12 11 21 21 C 1.38664 * 120.08975 * 0.02562 * 20 13 12 22 22 O 1.35653 * 120.15236 * 180.02562 * 21 20 13 23 23 C 1.44484 * 114.36241 * 259.46452 * 7 6 5 24 24 C 1.56282 * 107.52606 * 111.11933 * 23 7 6 25 25 H 1.09000 * 109.47047 * 301.52013 * 1 2 3 26 26 H 1.08997 * 109.46968 * 61.51344 * 1 2 3 27 27 H 1.08995 * 109.46913 * 181.52160 * 1 2 3 28 28 H 1.09002 * 109.46530 * 158.90679 * 3 2 1 29 29 H 1.08994 * 109.46943 * 278.90288 * 3 2 1 30 30 H 1.08998 * 109.47501 * 38.90675 * 3 2 1 31 31 H 1.09002 * 109.52894 * 87.49764 * 4 2 1 32 32 H 1.09001 * 109.58513 * 327.32186 * 4 2 1 33 33 H 1.08995 * 109.56207 * 170.72064 * 5 4 2 34 34 H 1.09001 * 109.65597 * 50.43704 * 5 4 2 35 35 H 1.09003 * 108.45711 * 299.03883 * 6 5 4 36 36 H 1.08995 * 108.33184 * 181.58478 * 6 5 4 37 37 H 1.07999 * 120.04555 * 359.97438 * 11 10 8 38 38 H 1.08001 * 119.85086 * 180.22909 * 12 11 10 39 39 H 1.09005 * 109.47157 * 240.00415 * 14 13 12 40 40 H 0.96696 * 114.00125 * 180.02562 * 15 14 13 41 41 H 1.08003 * 119.95515 * 180.02562 * 20 13 12 42 42 H 0.96703 * 113.99915 * 89.99945 * 22 21 20 43 43 H 1.09005 * 109.89331 * 230.32837 * 23 7 6 44 44 H 1.09001 * 109.89360 * 351.44549 * 23 7 6 45 45 H 1.08995 * 110.10068 * 204.82595 * 24 23 7 46 46 H 1.09000 * 110.14152 * 83.17249 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4640 1.7635 0.0000 4 6 2.4579 -0.8311 1.5319 5 6 3.8555 -0.2666 1.9073 6 6 4.8300 -0.7192 0.9191 7 7 4.5518 -0.2892 -0.4509 8 6 4.8375 0.9490 -0.9001 9 8 5.4203 1.7372 -0.1808 10 6 4.4430 1.3481 -2.2646 11 6 3.8955 0.4081 -3.1407 12 6 3.5238 0.7885 -4.4122 13 6 3.6953 2.0985 -4.8279 14 6 3.2845 2.5024 -6.2204 15 8 2.2890 3.5248 -6.1457 16 14 2.5910 1.0237 -7.1167 17 1 1.4080 0.5092 -6.3813 18 1 2.1868 1.4215 -8.4891 19 1 3.6260 -0.0384 -7.1943 20 6 4.2396 3.0370 -3.9734 21 6 4.6192 2.6718 -2.6906 22 8 5.1535 3.5927 -1.8500 23 6 3.9396 -1.3013 -1.2806 24 6 2.4721 -0.8482 -1.5699 25 1 -0.3633 0.5373 0.8760 26 1 -0.3633 0.4901 -0.9032 27 1 -0.3633 -1.0273 0.0273 28 1 3.4887 1.7980 0.3699 29 1 2.4306 2.1586 -1.0152 30 1 1.8243 2.3654 0.6454 31 1 2.5332 -1.9046 1.3582 32 1 1.7579 -0.6418 2.3456 33 1 4.1420 -0.6284 2.8948 34 1 3.8213 0.8229 1.9136 35 1 4.8614 -1.8086 0.9393 36 1 5.8110 -0.3415 1.2071 37 1 3.7599 -0.6145 -2.8208 38 1 3.0971 0.0617 -5.0875 39 1 4.1530 2.8796 -6.7604 40 1 1.9769 3.8336 -7.0073 41 1 4.3699 4.0567 -4.3046 42 1 4.5001 4.0587 -1.3105 43 1 4.4858 -1.3915 -2.2196 44 1 3.9376 -2.2579 -0.7581 45 1 1.8495 -1.7147 -1.7925 46 1 2.4532 -0.1480 -2.4050 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915400_13422076.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 18:18:25 Heat of formation + Delta-G solvation = -34.845040 kcal Electronic energy + Delta-G solvation = -27778.044385 eV Core-core repulsion = 24180.989665 eV Total energy + Delta-G solvation = -3597.054720 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.151 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.44971 -40.25928 -38.68349 -37.82873 -37.18406 -35.24113 -32.49562 -31.68814 -30.41622 -29.34373 -28.43122 -27.80030 -26.57432 -24.67426 -23.74217 -23.03959 -22.34227 -20.51304 -19.03266 -18.51086 -18.38300 -17.79064 -17.16185 -16.88288 -16.57234 -16.18277 -15.87102 -15.52195 -15.45635 -15.00104 -14.84515 -14.52579 -14.21825 -13.96244 -13.80361 -13.77026 -13.57104 -13.45682 -13.29749 -13.21621 -13.00819 -12.71227 -12.56498 -12.28069 -12.22990 -12.08695 -12.01921 -11.92234 -11.63838 -11.30519 -10.84995 -10.74614 -10.51438 -10.44388 -10.33518 -9.88416 -9.61604 -9.60258 -0.36239 0.17621 1.15401 1.49778 1.55613 1.71198 1.76938 1.90067 1.93328 2.00535 2.02585 2.56227 2.74602 3.15341 3.33087 3.48853 3.76952 3.86134 3.97353 4.03073 4.09625 4.12298 4.27398 4.34246 4.37586 4.55153 4.58344 4.67177 4.69327 4.71358 4.76004 4.79345 4.80306 4.87656 4.90190 4.96971 5.05119 5.07326 5.11604 5.24394 5.28257 5.40849 5.46647 5.55473 5.59956 5.61942 5.66168 6.38143 6.66126 6.78073 7.12483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.464 4.464 2 Si 1.052 2.948 3 C -0.499 4.499 4 C -0.413 4.413 5 C -0.132 4.132 6 C 0.103 3.897 7 N -0.606 5.606 8 C 0.579 3.421 9 O -0.560 6.560 10 C -0.184 4.184 11 C -0.106 4.106 12 C -0.162 4.162 13 C -0.035 4.035 14 C -0.097 4.097 15 O -0.562 6.562 16 Si 0.981 3.019 17 H -0.256 1.256 18 H -0.259 1.259 19 H -0.247 1.247 20 C -0.150 4.150 21 C 0.152 3.848 22 O -0.496 6.496 23 C 0.079 3.921 24 C -0.467 4.467 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.101 0.899 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.047 0.953 35 H 0.119 0.881 36 H 0.053 0.947 37 H 0.231 0.769 38 H 0.151 0.849 39 H 0.094 0.906 40 H 0.399 0.601 41 H 0.134 0.866 42 H 0.401 0.599 43 H 0.109 0.891 44 H 0.137 0.863 45 H 0.127 0.873 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.747 -7.462 -3.972 9.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.242 2.758 3 C -0.601 4.601 4 C -0.500 4.500 5 C -0.170 4.170 6 C -0.018 4.018 7 N -0.339 5.339 8 C 0.371 3.629 9 O -0.439 6.439 10 C -0.188 4.188 11 C -0.122 4.122 12 C -0.180 4.180 13 C -0.036 4.036 14 C -0.206 4.206 15 O -0.372 6.372 16 Si 0.803 3.197 17 H -0.180 1.180 18 H -0.183 1.183 19 H -0.171 1.171 20 C -0.168 4.168 21 C 0.106 3.894 22 O -0.308 6.308 23 C -0.042 4.042 24 C -0.553 4.553 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.120 0.880 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.066 0.934 35 H 0.137 0.863 36 H 0.072 0.928 37 H 0.246 0.754 38 H 0.168 0.832 39 H 0.112 0.888 40 H 0.250 0.750 41 H 0.152 0.848 42 H 0.260 0.740 43 H 0.126 0.874 44 H 0.154 0.846 45 H 0.145 0.855 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.101 -7.974 -3.605 9.284 hybrid contribution -0.294 1.876 0.172 1.907 sum -3.394 -6.098 -3.433 7.777 Atomic orbital electron populations 1.26354 1.22333 1.04683 1.03667 0.78445 0.65007 0.64706 0.67612 1.27378 1.07020 1.22858 1.02878 1.26386 1.00099 1.08302 1.15174 1.20735 0.95579 1.00924 0.99799 1.20281 0.98726 1.01971 0.80855 1.47511 1.61488 1.11775 1.13102 1.17872 0.77392 0.81441 0.86215 1.90808 1.42315 1.52061 1.58763 1.20306 1.07792 0.95206 0.95453 1.23985 0.91511 1.04836 0.91864 1.21290 1.03624 0.95749 0.97330 1.19716 0.95272 0.93571 0.95025 1.25042 0.95887 1.02061 0.97600 1.86453 1.57655 1.56644 1.36418 0.85238 0.80365 0.76078 0.77993 1.17978 1.18299 1.17053 1.21272 1.01125 1.01097 0.93348 1.18780 0.92360 0.88194 0.90108 1.84718 1.36840 1.53702 1.55570 1.22513 0.92370 0.92415 0.96938 1.28423 1.00311 1.10410 1.16134 0.92364 0.91900 0.90189 0.90549 0.92874 0.92857 0.87989 0.90654 0.89373 0.93382 0.86319 0.92845 0.75443 0.83208 0.88814 0.74996 0.84791 0.74008 0.87399 0.84561 0.85515 0.87533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 0.82 8.65 113.37 0.98 1.80 16 2 Si 1.05 -4.09 9.89 68.60 0.68 -3.41 16 3 C -0.50 -2.40 6.76 113.37 0.77 -1.63 16 4 C -0.41 1.92 4.72 72.79 0.34 2.26 16 5 C -0.13 0.12 5.50 29.24 0.16 0.28 16 6 C 0.10 -0.20 4.87 84.27 0.41 0.21 16 7 N -0.61 0.45 1.62 -896.18 -1.45 -1.00 16 8 C 0.58 4.34 4.15 86.70 0.36 4.70 16 9 O -0.56 -8.94 13.80 16.82 0.23 -8.71 16 10 C -0.18 -1.08 4.06 -20.01 -0.08 -1.16 16 11 C -0.11 0.07 5.58 22.52 0.13 0.20 16 12 C -0.16 0.08 8.61 22.24 0.19 0.28 16 13 C -0.04 -0.09 5.43 -19.83 -0.11 -0.20 16 14 C -0.10 0.19 2.80 71.23 0.20 0.39 16 15 O -0.56 0.41 12.74 -148.98 -1.90 -1.49 16 16 Si 0.98 -4.23 25.05 68.60 1.72 -2.51 16 17 H -0.26 0.62 7.11 99.48 0.71 1.33 16 18 H -0.26 0.98 7.11 99.48 0.71 1.69 16 19 H -0.25 1.08 7.11 99.48 0.71 1.78 16 20 C -0.15 -0.95 9.53 22.34 0.21 -0.74 16 21 C 0.15 1.37 6.55 22.84 0.15 1.52 16 22 O -0.50 -5.82 11.60 -68.85 -0.80 -6.62 16 23 C 0.08 -0.70 5.23 87.90 0.46 -0.24 16 24 C -0.47 3.92 4.22 73.12 0.31 4.22 16 25 H 0.06 0.01 7.96 -2.39 -0.02 -0.01 16 26 H 0.06 -0.04 7.96 -2.39 -0.02 -0.06 16 27 H 0.08 -0.33 7.96 -2.39 -0.02 -0.35 16 28 H 0.08 0.66 2.68 -2.39 -0.01 0.65 16 29 H 0.05 0.33 6.56 -2.39 -0.02 0.31 16 30 H 0.05 0.31 7.96 -2.39 -0.02 0.29 16 31 H 0.10 -0.95 7.90 -2.39 -0.02 -0.97 16 32 H 0.07 -0.26 7.95 -2.39 -0.02 -0.28 16 33 H 0.09 -0.23 8.14 -2.39 -0.02 -0.25 16 34 H 0.05 0.24 6.02 -2.39 -0.01 0.22 16 35 H 0.12 -1.11 7.17 -2.39 -0.02 -1.13 16 36 H 0.05 0.15 7.85 -2.39 -0.02 0.13 16 37 H 0.23 -1.71 1.92 -24.55 -0.05 -1.75 16 38 H 0.15 -0.82 4.85 -2.91 -0.01 -0.84 16 39 H 0.09 -0.47 7.96 -2.38 -0.02 -0.49 16 40 H 0.40 -3.88 8.74 -74.06 -0.65 -4.53 16 41 H 0.13 0.78 8.06 -2.91 -0.02 0.76 16 42 H 0.40 2.40 9.06 -74.06 -0.67 1.73 16 43 H 0.11 -1.19 5.67 -2.38 -0.01 -1.21 16 44 H 0.14 -2.11 7.17 -2.39 -0.02 -2.13 16 45 H 0.13 -1.76 8.00 -2.39 -0.02 -1.78 16 46 H 0.11 -0.66 3.93 -19.60 -0.08 -0.73 16 Total: 0.00 -22.77 334.21 3.33 -19.44 By element: Atomic # 1 Polarization: -7.97 SS G_CDS: 0.37 Total: -7.60 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: 4.48 Total: 11.89 kcal Atomic # 7 Polarization: 0.45 SS G_CDS: -1.45 Total: -1.00 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -2.46 Total: -16.81 kcal Atomic # 14 Polarization: -8.32 SS G_CDS: 2.40 Total: -5.92 kcal Total: -22.77 3.33 -19.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915400_13422076.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.400 kcal (2) G-P(sol) polarization free energy of solvation -22.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds