Wall clock time and date at job start Thu Mar 4 2021 18:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38502 * 119.84762 * 2 1 4 4 C 1.38092 * 120.38735 * 180.02562 * 3 2 1 5 5 C 1.50703 * 119.95751 * 180.02562 * 4 3 2 6 6 O 1.42896 * 109.47547 * 104.97460 * 5 4 3 7 7 Si 1.86307 * 109.46973 * 344.97603 * 5 4 3 8 8 H 1.48502 * 109.47119 * 299.99921 * 7 5 4 9 9 H 1.48499 * 109.47023 * 59.99770 * 7 5 4 10 10 H 1.48497 * 109.46865 * 180.02562 * 7 5 4 11 11 C 1.38669 * 120.08785 * 359.97438 * 4 3 2 12 12 O 1.35656 * 120.14994 * 180.02562 * 11 4 3 13 13 C 1.40169 * 119.69977 * 0.02562 * 11 4 3 14 14 C 1.47539 * 120.19489 * 179.97438 * 13 11 4 15 15 O 1.21587 * 119.99301 * 42.88805 * 14 13 11 16 16 N 1.34776 * 120.00197 * 222.88544 * 14 13 11 17 17 C 1.45041 * 120.98310 * 340.83199 * 16 14 13 18 18 C 1.52525 * 107.75650 * 285.04015 * 17 16 14 19 19 C 1.46939 * 114.66235 * 268.14801 * 18 17 16 20 20 Si 1.88881 * 108.02327 * 62.65904 * 19 18 17 21 21 C 1.86292 * 109.60807 * 55.38226 * 20 19 18 22 22 C 1.86298 * 109.60495 * 175.71355 * 20 19 18 23 23 C 1.85389 * 108.65241 * 295.62927 * 20 19 18 24 24 C 1.47145 * 120.84937 * 160.85224 * 16 14 13 25 25 C 1.37832 * 119.84973 * 180.26191 * 2 1 3 26 26 H 1.09006 * 109.47519 * 90.00008 * 1 2 3 27 27 H 1.09002 * 109.47075 * 209.99665 * 1 2 3 28 28 H 1.08998 * 109.47595 * 329.99677 * 1 2 3 29 29 H 1.08004 * 119.80552 * 0.02562 * 3 2 1 30 30 H 1.09004 * 109.47520 * 224.97694 * 5 4 3 31 31 H 0.96696 * 114.00325 * 180.02562 * 6 5 4 32 32 H 0.96695 * 114.00644 * 269.98078 * 12 11 4 33 33 H 1.09009 * 109.93737 * 165.42258 * 17 16 14 34 34 H 1.08996 * 109.73046 * 44.54080 * 17 16 14 35 35 H 1.08998 * 108.41850 * 146.85571 * 18 17 16 36 36 H 1.08997 * 108.41240 * 29.43554 * 18 17 16 37 37 H 1.09002 * 109.74974 * 182.28525 * 19 18 17 38 38 H 1.08992 * 109.75217 * 302.97108 * 19 18 17 39 39 H 1.08993 * 109.47516 * 60.00338 * 21 20 19 40 40 H 1.09006 * 109.46814 * 180.02562 * 21 20 19 41 41 H 1.09003 * 109.47489 * 299.99548 * 21 20 19 42 42 H 1.09003 * 109.47382 * 60.00005 * 22 20 19 43 43 H 1.09001 * 109.46988 * 179.97438 * 22 20 19 44 44 H 1.08995 * 109.47612 * 300.00002 * 22 20 19 45 45 H 1.08999 * 108.89342 * 200.88642 * 23 20 19 46 46 H 1.09003 * 108.89095 * 319.36608 * 23 20 19 47 47 H 1.09004 * 108.59906 * 18.88828 * 24 16 14 48 48 H 1.08998 * 108.48331 * 261.10038 * 24 16 14 49 49 H 1.08000 * 120.05085 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.2013 0.0000 4 6 3.5772 1.2143 -0.0005 5 6 4.3174 2.5270 0.0001 6 8 4.8551 2.7702 1.3015 7 14 3.1445 3.9015 -0.4539 8 1 2.5857 3.6489 -1.8064 9 1 2.0390 3.9561 0.5361 10 1 3.8740 5.1949 -0.4539 11 6 4.2836 0.0211 -0.0005 12 8 5.6401 0.0324 -0.0005 13 6 3.5897 -1.1968 -0.0005 14 6 4.3304 -2.4728 -0.0011 15 8 5.3031 -2.6113 0.7151 16 7 3.9287 -3.4848 -0.7955 17 6 2.5831 -3.5212 -1.3355 18 6 1.6393 -3.9217 -0.2062 19 6 1.3895 -5.3657 -0.0989 20 14 3.0312 -6.2156 0.2885 21 6 3.7785 -5.4632 1.8201 22 6 2.7434 -8.0357 0.5627 23 6 4.1782 -5.9722 -1.1474 24 6 4.8448 -4.5842 -1.1383 25 6 2.1930 -1.1955 -0.0055 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5139 29 1 1.6506 2.1334 0.0004 30 1 5.1288 2.4870 -0.7267 31 1 5.3455 3.6003 1.3757 32 1 6.0335 0.0354 -0.8838 33 1 2.5257 -4.2531 -2.1414 34 1 2.3108 -2.5352 -1.7118 35 1 0.6852 -3.4175 -0.3597 36 1 2.0632 -3.5745 0.7360 37 1 0.6771 -5.5576 0.7034 38 1 0.9925 -5.7419 -1.0417 39 1 3.0959 -5.5945 2.6597 40 1 4.7259 -5.9550 2.0414 41 1 3.9515 -4.3997 1.6553 42 1 2.3117 -8.4748 -0.3367 43 1 3.6921 -8.5240 0.7856 44 1 2.0582 -8.1733 1.3991 45 1 4.9545 -6.7367 -1.1126 46 1 3.6141 -6.0867 -2.0731 47 1 5.6605 -4.5952 -0.4154 48 1 5.2607 -4.3918 -2.1273 49 1 1.6514 -2.1298 -0.0093 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915400_13422088.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 18:18:43 Heat of formation + Delta-G solvation = -93.868089 kcal Electronic energy + Delta-G solvation = -29209.702555 eV Core-core repulsion = 25454.550784 eV Total energy + Delta-G solvation = -3755.151770 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.167 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.11082 -40.33876 -38.46046 -37.63882 -37.58897 -34.49914 -33.21846 -33.09122 -31.14557 -29.11312 -28.40634 -27.61600 -27.47676 -26.60572 -25.42394 -23.05453 -22.89374 -21.69101 -19.97512 -19.50052 -18.56315 -18.11871 -17.80839 -17.40313 -16.66220 -16.44958 -16.08185 -15.71313 -15.27192 -15.18091 -14.93345 -14.84916 -14.65554 -14.54785 -14.32053 -14.14294 -13.86637 -13.74455 -13.53143 -13.34341 -13.22315 -13.14342 -13.01607 -12.88891 -12.83960 -12.68862 -12.44540 -12.29708 -12.17808 -12.11715 -11.86572 -11.76011 -11.54431 -10.98958 -10.78228 -10.58408 -10.31548 -10.19156 -10.05976 -9.69517 -9.45200 -0.26083 0.05857 1.10268 1.43287 1.48080 1.52312 1.78635 1.85947 1.88062 1.97723 2.01907 2.40742 2.68486 3.08327 3.37497 3.41413 3.70916 3.86931 3.87665 4.03742 4.08976 4.11164 4.25632 4.30822 4.39067 4.43547 4.49308 4.61613 4.67773 4.69593 4.74061 4.77612 4.80571 4.83743 4.86103 4.87382 4.90677 4.98807 5.02015 5.06226 5.15348 5.20729 5.25394 5.32804 5.40919 5.52006 5.54208 5.61375 5.67267 5.69434 6.33431 6.67524 6.79465 7.04032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.095 4.095 3 C -0.097 4.097 4 C -0.120 4.120 5 C -0.085 4.085 6 O -0.564 6.564 7 Si 0.987 3.013 8 H -0.246 1.246 9 H -0.261 1.261 10 H -0.255 1.255 11 C 0.157 3.843 12 O -0.493 6.493 13 C -0.174 4.174 14 C 0.567 3.433 15 O -0.559 6.559 16 N -0.605 5.605 17 C 0.084 3.916 18 C -0.147 4.147 19 C -0.389 4.389 20 Si 1.045 2.955 21 C -0.475 4.475 22 C -0.456 4.456 23 C -0.426 4.426 24 C 0.121 3.879 25 C -0.101 4.101 26 H 0.094 0.906 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.143 0.857 30 H 0.085 0.915 31 H 0.395 0.605 32 H 0.401 0.599 33 H 0.120 0.880 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.049 0.951 37 H 0.085 0.915 38 H 0.103 0.897 39 H 0.058 0.942 40 H 0.051 0.949 41 H 0.050 0.950 42 H 0.081 0.919 43 H 0.062 0.938 44 H 0.067 0.933 45 H 0.095 0.905 46 H 0.104 0.896 47 H 0.057 0.943 48 H 0.071 0.929 49 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.913 -0.364 -7.617 10.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.095 4.095 3 C -0.115 4.115 4 C -0.121 4.121 5 C -0.194 4.194 6 O -0.373 6.373 7 Si 0.809 3.191 8 H -0.170 1.170 9 H -0.186 1.186 10 H -0.179 1.179 11 C 0.111 3.889 12 O -0.305 6.305 13 C -0.178 4.178 14 C 0.356 3.644 15 O -0.437 6.437 16 N -0.338 5.338 17 C -0.038 4.038 18 C -0.185 4.185 19 C -0.476 4.476 20 Si 1.237 2.763 21 C -0.578 4.578 22 C -0.563 4.563 23 C -0.511 4.511 24 C -0.001 4.001 25 C -0.118 4.118 26 H 0.113 0.887 27 H 0.102 0.898 28 H 0.093 0.907 29 H 0.161 0.839 30 H 0.103 0.897 31 H 0.245 0.755 32 H 0.260 0.740 33 H 0.138 0.862 34 H 0.112 0.888 35 H 0.117 0.883 36 H 0.068 0.932 37 H 0.104 0.896 38 H 0.121 0.879 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.100 0.900 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.113 0.887 46 H 0.123 0.877 47 H 0.076 0.924 48 H 0.090 0.910 49 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -7.227 -0.340 -6.729 9.881 hybrid contribution 1.568 0.283 0.188 1.605 sum -5.659 -0.057 -6.541 8.650 Atomic orbital electron populations 1.20936 0.87917 1.04292 1.04281 1.20170 0.98245 0.91651 0.99402 1.21363 0.92612 0.99672 0.97872 1.19829 0.94068 0.93935 1.04283 1.24878 1.04282 1.01150 0.89082 1.86526 1.74915 1.46502 1.29328 0.85202 0.77992 0.75853 0.80071 1.16969 1.18558 1.17927 1.18396 0.83271 0.90613 0.96663 1.84839 1.15441 1.96146 1.34032 1.20411 0.95411 0.92703 1.09274 1.18198 0.83389 0.83693 0.79077 1.90812 1.30343 1.82509 1.40054 1.47761 1.14862 1.22021 1.49127 1.21955 0.79650 1.04771 0.97464 1.20747 1.00967 0.98408 0.98389 1.24989 1.14966 1.00609 1.07072 0.78823 0.67369 0.65802 0.64333 1.26666 1.06395 1.06744 1.18009 1.26182 1.04646 1.20217 1.05282 1.26558 1.11072 0.96924 1.16568 1.21234 0.92089 0.86080 1.00648 1.22671 0.91677 1.01529 0.95960 0.88747 0.89822 0.90736 0.83949 0.89706 0.75512 0.74039 0.86152 0.88827 0.88285 0.93237 0.89593 0.87879 0.92224 0.92990 0.93055 0.90008 0.91909 0.91381 0.88677 0.87747 0.92397 0.91034 0.79817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.75 10.00 71.24 0.71 1.46 16 2 C -0.09 -0.01 5.87 -19.90 -0.12 -0.13 16 3 C -0.10 -0.25 8.30 22.30 0.19 -0.07 16 4 C -0.12 -0.71 5.30 -19.80 -0.10 -0.82 16 5 C -0.09 -0.19 2.37 71.24 0.17 -0.02 16 6 O -0.56 -3.20 12.86 -148.98 -1.92 -5.12 16 7 Si 0.99 -1.43 25.49 68.60 1.75 0.31 16 8 H -0.25 0.46 7.11 99.48 0.71 1.16 16 9 H -0.26 -0.18 6.73 99.48 0.67 0.49 16 10 H -0.26 0.36 7.11 99.48 0.71 1.07 16 11 C 0.16 1.45 6.66 22.84 0.15 1.60 16 12 O -0.49 -5.19 11.69 -76.12 -0.89 -6.08 16 13 C -0.17 -1.33 5.46 -20.01 -0.11 -1.44 16 14 C 0.57 5.57 5.35 86.70 0.46 6.04 16 15 O -0.56 -10.84 15.03 9.61 0.14 -10.69 16 16 N -0.60 -1.07 1.85 -826.56 -1.53 -2.59 16 17 C 0.08 -0.46 4.92 86.50 0.43 -0.04 16 18 C -0.15 0.88 3.10 28.56 0.09 0.97 16 19 C -0.39 2.95 4.77 70.10 0.33 3.28 16 20 Si 1.04 -4.43 10.48 68.60 0.72 -3.71 16 21 C -0.48 -2.67 8.41 113.37 0.95 -1.72 16 22 C -0.46 1.49 8.65 113.37 0.98 2.47 16 23 C -0.43 2.02 4.36 72.31 0.32 2.34 16 24 C 0.12 0.11 5.80 86.59 0.50 0.61 16 25 C -0.10 -0.15 6.98 22.52 0.16 0.01 16 26 H 0.09 -0.90 8.14 -2.38 -0.02 -0.92 16 27 H 0.08 -0.70 8.08 -2.39 -0.02 -0.72 16 28 H 0.07 -0.48 8.08 -2.39 -0.02 -0.50 16 29 H 0.14 -0.11 4.86 -2.91 -0.01 -0.12 16 30 H 0.09 -0.12 7.83 -2.38 -0.02 -0.14 16 31 H 0.39 -1.54 8.74 -74.06 -0.65 -2.19 16 32 H 0.40 0.39 9.06 -74.06 -0.67 -0.28 16 33 H 0.12 -1.26 6.72 -2.38 -0.02 -1.28 16 34 H 0.09 -0.63 5.85 -2.39 -0.01 -0.64 16 35 H 0.10 -1.02 7.33 -2.39 -0.02 -1.04 16 36 H 0.05 -0.04 5.43 -2.39 -0.01 -0.05 16 37 H 0.09 -0.65 8.00 -2.39 -0.02 -0.67 16 38 H 0.10 -1.18 8.00 -2.39 -0.02 -1.20 16 39 H 0.06 0.31 7.96 -2.39 -0.02 0.29 16 40 H 0.05 0.40 7.96 -2.38 -0.02 0.38 16 41 H 0.05 0.55 5.20 -2.39 -0.01 0.54 16 42 H 0.08 -0.44 7.96 -2.39 -0.02 -0.46 16 43 H 0.06 -0.11 7.96 -2.39 -0.02 -0.13 16 44 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 45 H 0.09 -0.48 7.93 -2.39 -0.02 -0.50 16 46 H 0.10 -0.98 7.30 -2.39 -0.02 -0.99 16 47 H 0.06 0.40 7.10 -2.38 -0.02 0.39 16 48 H 0.07 -0.09 8.14 -2.39 -0.02 -0.11 16 49 H 0.19 -0.67 2.23 -3.18 -0.01 -0.67 16 Total: 0.00 -25.59 368.48 3.78 -21.81 By element: Atomic # 1 Polarization: -8.87 SS G_CDS: 0.39 Total: -8.48 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: 5.11 Total: 14.55 kcal Atomic # 7 Polarization: -1.07 SS G_CDS: -1.53 Total: -2.59 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -2.66 Total: -21.88 kcal Atomic # 14 Polarization: -5.86 SS G_CDS: 2.47 Total: -3.40 kcal Total: -25.59 3.78 -21.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915400_13422088.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.060 kcal (2) G-P(sol) polarization free energy of solvation -25.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds