Wall clock time and date at job start Thu Mar 4 2021 18:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86291 * 108.82128 * 2 1 4 4 C 1.84157 * 108.84313 * 118.48633 * 2 1 3 5 5 C 1.55343 * 109.12098 * 207.39000 * 4 2 1 6 6 C 1.45976 * 108.92369 * 290.54755 * 5 4 2 7 7 N 1.46273 * 114.57748 * 60.36319 * 6 5 4 8 8 C 1.34775 * 122.82241 * 79.18742 * 7 6 5 9 9 O 1.21654 * 119.99896 * 3.01087 * 8 7 6 10 10 C 1.47043 * 119.99973 * 183.00870 * 8 7 6 11 11 C 1.36229 * 123.49203 * 172.01234 * 10 8 7 12 12 Cl 1.73595 * 124.60507 * 0.27066 * 11 10 8 13 13 S 1.70446 * 110.79045 * 179.97438 * 11 10 8 14 14 C 1.75506 * 92.46575 * 0.02562 * 13 11 10 15 15 C 1.50691 * 124.68499 * 180.02562 * 14 13 11 16 16 O 1.42906 * 109.47227 * 244.97323 * 15 14 13 17 17 Si 1.86302 * 109.47473 * 4.97289 * 15 14 13 18 18 H 1.48504 * 109.47019 * 300.00367 * 17 15 14 19 19 H 1.48500 * 109.47059 * 59.99741 * 17 15 14 20 20 H 1.48494 * 109.47495 * 180.02562 * 17 15 14 21 21 C 1.32693 * 110.62868 * 359.97438 * 14 13 11 22 22 C 1.44485 * 114.35824 * 259.46178 * 7 6 5 23 23 C 1.56283 * 107.52691 * 111.11421 * 22 7 6 24 24 H 1.09006 * 109.46893 * 301.51673 * 1 2 3 25 25 H 1.09005 * 109.47045 * 61.51330 * 1 2 3 26 26 H 1.08998 * 109.47440 * 181.51993 * 1 2 3 27 27 H 1.09003 * 109.47453 * 156.33300 * 3 2 1 28 28 H 1.09001 * 109.47360 * 276.33224 * 3 2 1 29 29 H 1.09006 * 109.47099 * 36.33173 * 3 2 1 30 30 H 1.08997 * 109.53005 * 87.49726 * 4 2 1 31 31 H 1.08997 * 109.58726 * 327.31963 * 4 2 1 32 32 H 1.09008 * 109.55911 * 170.71760 * 5 4 2 33 33 H 1.08997 * 109.65733 * 50.44163 * 5 4 2 34 34 H 1.08998 * 108.46509 * 299.04026 * 6 5 4 35 35 H 1.08997 * 108.33391 * 181.58693 * 6 5 4 36 36 H 1.08995 * 109.47610 * 124.97403 * 15 14 13 37 37 H 0.96697 * 114.00340 * 180.02562 * 16 15 14 38 38 H 1.07993 * 123.45141 * 179.97438 * 21 14 13 39 39 H 1.08996 * 109.89772 * 230.32627 * 22 7 6 40 40 H 1.09007 * 109.89045 * 351.44252 * 22 7 6 41 41 H 1.09002 * 110.09859 * 204.82629 * 23 22 7 42 42 H 1.08996 * 110.23534 * 83.22683 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4640 1.7633 0.0000 4 6 2.4578 -0.8313 1.5319 5 6 3.8555 -0.2667 1.9072 6 6 4.8299 -0.7195 0.9191 7 7 4.5518 -0.2893 -0.4510 8 6 4.8375 0.9489 -0.9001 9 8 5.3984 1.7457 -0.1718 10 6 4.4711 1.3366 -2.2704 11 6 4.5809 2.6082 -2.7466 12 17 5.1698 3.9579 -1.8272 13 16 4.0693 2.6925 -4.3703 14 6 3.6949 0.9786 -4.4205 15 6 3.1516 0.2545 -5.6252 16 8 1.8355 -0.2239 -5.3399 17 14 3.0870 1.4225 -7.0751 18 1 2.2034 2.5702 -6.7472 19 1 4.4546 1.9197 -7.3715 20 1 2.5510 0.7092 -8.2620 21 6 3.9574 0.4083 -3.2515 22 6 3.9395 -1.3014 -1.2807 23 6 2.4720 -0.8482 -1.5699 24 1 -0.3633 0.5372 0.8761 25 1 -0.3633 0.4902 -0.9033 26 1 -0.3634 -1.0273 0.0273 27 1 3.4721 1.8036 0.4125 28 1 2.4739 2.1438 -1.0214 29 1 1.7975 2.3743 0.6089 30 1 2.5330 -1.9047 1.3582 31 1 1.7578 -0.6420 2.3456 32 1 4.1420 -0.6286 2.8948 33 1 3.8213 0.8227 1.9136 34 1 4.8613 -1.8089 0.9392 35 1 5.8110 -0.3419 1.2071 36 1 3.8000 -0.5879 -5.8659 37 1 1.4232 -0.7016 -6.0726 38 1 3.8022 -0.6419 -3.0533 39 1 4.4856 -1.3917 -2.2196 40 1 3.9374 -2.2580 -0.7581 41 1 1.8494 -1.7148 -1.7926 42 1 2.4512 -0.1486 -2.4054 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915400_13431040.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 18:27:11 Heat of formation + Delta-G solvation = -12.984489 kcal Electronic energy + Delta-G solvation = -26181.383780 eV Core-core repulsion = 22633.311651 eV Total energy + Delta-G solvation = -3548.072129 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 347.069 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.00422 -38.98696 -38.19294 -37.67611 -37.13888 -34.46117 -31.90444 -30.91647 -29.25998 -28.42044 -27.51786 -26.82428 -25.51163 -23.80241 -22.22889 -21.50969 -20.03387 -19.03849 -18.35735 -17.76790 -17.27341 -16.80380 -16.57951 -16.09494 -15.74055 -15.34472 -14.99497 -14.91428 -14.68326 -14.49933 -14.31719 -13.94113 -13.77369 -13.75532 -13.38373 -13.29301 -13.22526 -13.02187 -12.97125 -12.67293 -12.53225 -12.28408 -12.19144 -12.13644 -12.08701 -11.90664 -11.81913 -11.45881 -10.89802 -10.71554 -10.45888 -10.43329 -10.32955 -9.85976 -9.62462 -9.49092 -0.61635 -0.22260 0.48402 0.77180 1.01380 1.11983 1.41813 1.45629 1.82267 1.91214 1.93426 2.00371 2.09039 2.20718 2.78591 3.26548 3.64820 3.84476 3.92809 4.06458 4.13286 4.17725 4.35617 4.43630 4.47283 4.59176 4.64639 4.70628 4.73590 4.77350 4.81123 4.82072 4.92363 4.98293 5.02328 5.06600 5.14006 5.26997 5.44398 5.52686 5.56000 5.65615 5.67603 6.38916 6.87934 7.09517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.462 4.462 2 Si 1.042 2.958 3 C -0.495 4.495 4 C -0.410 4.410 5 C -0.133 4.133 6 C 0.105 3.895 7 N -0.600 5.600 8 C 0.592 3.408 9 O -0.555 6.555 10 C -0.155 4.155 11 C -0.136 4.136 12 Cl -0.001 7.001 13 S 0.198 5.802 14 C -0.198 4.198 15 C -0.024 4.024 16 O -0.551 6.551 17 Si 0.884 3.116 18 H -0.258 1.258 19 H -0.245 1.245 20 H -0.210 1.210 21 C -0.093 4.093 22 C 0.085 3.915 23 C -0.447 4.447 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.048 0.952 29 H 0.046 0.954 30 H 0.102 0.898 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.046 0.954 34 H 0.120 0.880 35 H 0.056 0.944 36 H 0.127 0.873 37 H 0.404 0.596 38 H 0.229 0.771 39 H 0.102 0.898 40 H 0.132 0.868 41 H 0.119 0.881 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.292 -9.783 -5.099 11.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.568 4.568 2 Si 1.233 2.767 3 C -0.597 4.597 4 C -0.497 4.497 5 C -0.171 4.171 6 C -0.016 4.016 7 N -0.333 5.333 8 C 0.381 3.619 9 O -0.435 6.435 10 C -0.175 4.175 11 C -0.282 4.282 12 Cl 0.028 6.972 13 S 0.464 5.536 14 C -0.314 4.314 15 C -0.138 4.138 16 O -0.361 6.361 17 Si 0.706 3.294 18 H -0.183 1.183 19 H -0.169 1.169 20 H -0.131 1.131 21 C -0.120 4.120 22 C -0.036 4.036 23 C -0.534 4.534 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.098 0.902 27 H 0.095 0.905 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.121 0.879 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.065 0.935 34 H 0.138 0.862 35 H 0.075 0.925 36 H 0.145 0.855 37 H 0.256 0.744 38 H 0.244 0.756 39 H 0.119 0.881 40 H 0.150 0.850 41 H 0.137 0.863 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.910 -7.164 -5.845 9.441 hybrid contribution -0.027 -0.097 1.351 1.355 sum -1.938 -7.260 -4.494 8.755 Atomic orbital electron populations 1.26339 1.22438 1.04588 1.03458 0.78633 0.65159 0.64696 0.68208 1.27393 1.06916 1.22717 1.02684 1.26343 1.00165 1.08260 1.14914 1.20746 0.95573 1.00880 0.99908 1.20283 0.98743 1.01998 0.80623 1.47443 1.61099 1.11585 1.13172 1.17207 0.77477 0.81724 0.85459 1.90847 1.43119 1.51332 1.58221 1.20352 1.08336 0.92109 0.96721 1.25514 1.08316 0.93943 1.00442 1.98411 1.85850 1.40715 1.72192 1.83406 1.59776 1.08335 1.02074 1.23913 1.11172 0.95225 1.01123 1.23774 0.87986 1.03580 0.98444 1.86466 1.27534 1.77132 1.44952 0.86398 0.82497 0.80580 0.79904 1.18253 1.16876 1.13107 1.22746 0.95980 1.04112 0.89117 1.22483 0.92360 0.91938 0.96868 1.28066 1.00303 1.09805 1.15218 0.92549 0.92073 0.90180 0.90496 0.93285 0.93417 0.87908 0.90805 0.89293 0.93491 0.86214 0.92516 0.85540 0.74411 0.75577 0.88067 0.84989 0.86292 0.88147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 -0.03 8.65 113.37 0.98 0.95 16 2 Si 1.04 -2.22 9.91 68.60 0.68 -1.54 16 3 C -0.49 -3.75 6.80 113.37 0.77 -2.98 16 4 C -0.41 1.49 4.72 72.79 0.34 1.83 16 5 C -0.13 0.05 5.50 29.24 0.16 0.21 16 6 C 0.11 -0.22 4.86 84.27 0.41 0.19 16 7 N -0.60 0.42 1.62 -837.66 -1.36 -0.94 16 8 C 0.59 4.29 4.16 86.55 0.36 4.65 16 9 O -0.56 -8.36 13.50 -4.20 -0.06 -8.41 16 10 C -0.16 -0.86 4.11 -19.84 -0.08 -0.94 16 11 C -0.14 -1.13 6.62 67.35 0.45 -0.68 16 12 Cl 0.00 -0.01 27.23 -2.72 -0.07 -0.08 16 13 S 0.20 0.76 20.19 -56.49 -1.14 -0.38 16 14 C -0.20 0.18 5.69 24.51 0.14 0.32 16 15 C -0.02 0.17 2.93 71.23 0.21 0.37 16 16 O -0.55 4.21 12.86 -148.98 -1.92 2.29 16 17 Si 0.88 -3.55 26.20 68.60 1.80 -1.76 16 18 H -0.26 -0.25 7.11 99.48 0.71 0.45 16 19 H -0.25 0.39 7.11 99.48 0.71 1.10 16 20 H -0.21 1.31 7.11 99.48 0.71 2.01 16 21 C -0.09 0.11 5.94 22.70 0.13 0.24 16 22 C 0.08 -0.72 5.24 87.90 0.46 -0.26 16 23 C -0.45 3.06 4.21 73.12 0.31 3.37 16 24 H 0.06 0.11 7.96 -2.38 -0.02 0.09 16 25 H 0.06 0.09 7.96 -2.38 -0.02 0.07 16 26 H 0.08 -0.21 7.96 -2.39 -0.02 -0.22 16 27 H 0.08 0.85 2.73 -2.39 -0.01 0.84 16 28 H 0.05 0.47 6.38 -2.39 -0.02 0.46 16 29 H 0.05 0.43 7.96 -2.38 -0.02 0.42 16 30 H 0.10 -0.88 7.90 -2.39 -0.02 -0.90 16 31 H 0.07 -0.17 7.95 -2.39 -0.02 -0.19 16 32 H 0.09 -0.20 8.14 -2.38 -0.02 -0.22 16 33 H 0.05 0.28 5.97 -2.39 -0.01 0.26 16 34 H 0.12 -1.14 7.17 -2.39 -0.02 -1.16 16 35 H 0.06 0.11 7.87 -2.39 -0.02 0.09 16 36 H 0.13 -1.70 7.96 -2.39 -0.02 -1.72 16 37 H 0.40 -6.67 8.74 -74.06 -0.65 -7.32 16 38 H 0.23 -1.70 3.00 -2.91 -0.01 -1.71 16 39 H 0.10 -1.10 5.44 -2.39 -0.01 -1.12 16 40 H 0.13 -1.96 7.17 -2.38 -0.02 -1.97 16 41 H 0.12 -1.37 8.00 -2.39 -0.02 -1.39 16 42 H 0.10 -0.39 4.17 -2.42 -0.01 -0.40 16 Total: 0.00 -19.83 332.72 3.76 -16.07 By element: Atomic # 1 Polarization: -13.71 SS G_CDS: 1.18 Total: -12.53 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: 4.64 Total: 7.27 kcal Atomic # 7 Polarization: 0.42 SS G_CDS: -1.36 Total: -0.94 kcal Atomic # 8 Polarization: -4.15 SS G_CDS: -1.97 Total: -6.12 kcal Atomic # 14 Polarization: -5.77 SS G_CDS: 2.48 Total: -3.29 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -1.14 Total: -0.38 kcal Atomic # 17 Polarization: -0.01 SS G_CDS: -0.07 Total: -0.08 kcal Total: -19.83 3.76 -16.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915400_13431040.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.086 kcal (2) G-P(sol) polarization free energy of solvation -19.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds