Wall clock time and date at job start Thu Mar 4 2021 18:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86299 * 108.82041 * 2 1 4 4 C 1.84153 * 108.84335 * 118.48312 * 2 1 3 5 5 C 1.55336 * 109.12365 * 207.39114 * 4 2 1 6 6 C 1.45976 * 108.92341 * 290.54833 * 5 4 2 7 7 N 1.46275 * 114.57714 * 60.36140 * 6 5 4 8 8 C 1.34776 * 122.82053 * 79.18547 * 7 6 5 9 9 O 1.21613 * 119.99905 * 183.87001 * 8 7 6 10 10 C 1.47384 * 120.00305 * 3.88203 * 8 7 6 11 11 C 1.36416 * 127.18734 * 351.62993 * 10 8 7 12 12 O 1.33647 * 108.39777 * 180.02562 * 11 10 8 13 13 C 1.34217 * 110.90700 * 359.97438 * 12 11 10 14 14 C 1.50701 * 125.43985 * 180.02562 * 13 12 11 15 15 O 1.42899 * 109.47208 * 245.02652 * 14 13 12 16 16 Si 1.86305 * 109.46984 * 5.02622 * 14 13 12 17 17 H 1.48495 * 109.46898 * 299.99779 * 16 14 13 18 18 H 1.48499 * 109.46993 * 59.99971 * 16 14 13 19 19 H 1.48499 * 109.46973 * 180.02562 * 16 14 13 20 20 C 1.34181 * 109.12488 * 0.26496 * 13 12 11 21 21 C 1.44478 * 114.35620 * 259.46232 * 7 6 5 22 22 C 1.56289 * 107.52843 * 111.11602 * 21 7 6 23 23 H 1.09004 * 109.47093 * 301.51790 * 1 2 3 24 24 H 1.09003 * 109.47375 * 61.51709 * 1 2 3 25 25 H 1.08996 * 109.47502 * 181.51507 * 1 2 3 26 26 H 1.08994 * 109.47066 * 158.11404 * 3 2 1 27 27 H 1.09005 * 109.46777 * 278.11434 * 3 2 1 28 28 H 1.08999 * 109.46960 * 38.10954 * 3 2 1 29 29 H 1.08997 * 109.53012 * 87.49739 * 4 2 1 30 30 H 1.09000 * 109.58452 * 327.32323 * 4 2 1 31 31 H 1.09002 * 109.56230 * 170.72109 * 5 4 2 32 32 H 1.08994 * 109.65759 * 50.44282 * 5 4 2 33 33 H 1.08992 * 108.46617 * 299.03967 * 6 5 4 34 34 H 1.09009 * 108.33378 * 181.58269 * 6 5 4 35 35 H 1.08004 * 125.80603 * 0.03560 * 11 10 8 36 36 H 1.09007 * 109.47104 * 125.02341 * 14 13 12 37 37 H 0.96695 * 114.00134 * 60.00251 * 15 14 13 38 38 H 1.08001 * 127.02350 * 179.73253 * 20 13 12 39 39 H 1.09002 * 109.89360 * 230.32156 * 21 7 6 40 40 H 1.08994 * 109.89783 * 351.43945 * 21 7 6 41 41 H 1.08998 * 110.09610 * 204.82169 * 22 21 7 42 42 H 1.08996 * 110.23159 * 83.21620 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4640 1.7634 0.0000 4 6 2.4578 -0.8312 1.5319 5 6 3.8554 -0.2667 1.9073 6 6 4.8298 -0.7195 0.9192 7 7 4.5518 -0.2893 -0.4510 8 6 4.8374 0.9489 -0.9001 9 8 4.5204 1.2747 -2.0280 10 6 5.5341 1.9080 -0.0243 11 6 5.8149 1.7597 1.3024 12 8 6.4556 2.8546 1.7228 13 6 6.6137 3.7320 0.7196 14 6 7.2920 5.0732 0.8304 15 8 6.3372 6.1106 0.5977 16 14 8.0138 5.2649 2.5372 17 1 6.9285 5.1743 3.5466 18 1 9.0060 4.1869 2.7789 19 1 8.6817 6.5867 2.6466 20 6 6.0668 3.2267 -0.3967 21 6 3.9395 -1.3014 -1.2805 22 6 2.4719 -0.8483 -1.5699 23 1 -0.3633 0.5372 0.8761 24 1 -0.3634 0.4901 -0.9033 25 1 -0.3634 -1.0272 0.0272 26 1 3.4838 1.7996 0.3831 27 1 2.4439 2.1540 -1.0174 28 1 1.8158 2.3681 0.6342 29 1 2.5330 -1.9046 1.3583 30 1 1.7577 -0.6419 2.3456 31 1 4.1419 -0.6285 2.8948 32 1 3.8212 0.8227 1.9136 33 1 4.8612 -1.8087 0.9393 34 1 5.8110 -0.3417 1.2071 35 1 5.5625 0.9031 1.9097 36 1 8.0887 5.1398 0.0894 37 1 5.5983 6.1122 1.2214 38 1 6.0275 3.6928 -1.3702 39 1 4.4857 -1.3917 -2.2195 40 1 3.9374 -2.2579 -0.7581 41 1 1.8494 -1.7149 -1.7926 42 1 2.4513 -0.1486 -2.4054 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915400_13456056.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 18:27:21 Heat of formation + Delta-G solvation = -46.638259 kcal Electronic energy + Delta-G solvation = -23857.531320 eV Core-core repulsion = 20543.728967 eV Total energy + Delta-G solvation = -3313.802353 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 297.135 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.89594 -41.39054 -38.12658 -37.95817 -34.67228 -33.81115 -32.16910 -30.68451 -29.33170 -28.44203 -27.41915 -26.72225 -25.20172 -23.21545 -22.62721 -22.20456 -20.02420 -18.89998 -18.07466 -17.89176 -17.39131 -16.99389 -16.59138 -16.40229 -15.74037 -15.27759 -15.06631 -14.83526 -14.66961 -14.50401 -14.08672 -13.96306 -13.89303 -13.85718 -13.42862 -13.37136 -13.22842 -13.01464 -12.79491 -12.66353 -12.31003 -12.21118 -12.14912 -12.04206 -11.71491 -11.12771 -10.99341 -10.68435 -10.60355 -10.47219 -10.43540 -9.81454 -9.73329 0.20563 0.79851 1.05578 1.43041 1.50041 1.72714 1.77913 1.88871 1.92187 1.96181 2.04935 2.20626 2.73529 3.27629 3.37225 3.52267 3.75619 3.79210 4.10578 4.16855 4.35151 4.38054 4.41813 4.47850 4.49444 4.61587 4.68877 4.69785 4.73412 4.75962 4.80376 4.85692 4.89038 4.95648 5.05539 5.11292 5.22192 5.35576 5.47006 5.48167 5.53367 5.65344 5.80269 6.33936 6.53136 7.08139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.465 4.465 2 Si 1.043 2.957 3 C -0.484 4.484 4 C -0.394 4.394 5 C -0.158 4.158 6 C 0.065 3.935 7 N -0.606 5.606 8 C 0.600 3.400 9 O -0.572 6.572 10 C -0.256 4.256 11 C 0.022 3.978 12 O -0.171 6.171 13 C -0.053 4.053 14 C -0.046 4.046 15 O -0.544 6.544 16 Si 1.001 2.999 17 H -0.254 1.254 18 H -0.256 1.256 19 H -0.258 1.258 20 C -0.151 4.151 21 C 0.118 3.882 22 C -0.438 4.438 23 H 0.068 0.932 24 H 0.051 0.949 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.037 0.963 28 H 0.061 0.939 29 H 0.103 0.897 30 H 0.091 0.909 31 H 0.126 0.874 32 H 0.066 0.934 33 H 0.127 0.873 34 H 0.092 0.908 35 H 0.268 0.732 36 H 0.147 0.853 37 H 0.393 0.607 38 H 0.147 0.853 39 H 0.051 0.949 40 H 0.131 0.869 41 H 0.092 0.908 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.213 -5.182 7.955 9.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.571 4.571 2 Si 1.234 2.766 3 C -0.587 4.587 4 C -0.483 4.483 5 C -0.195 4.195 6 C -0.056 4.056 7 N -0.339 5.339 8 C 0.392 3.608 9 O -0.452 6.452 10 C -0.261 4.261 11 C -0.047 4.047 12 O -0.067 6.067 13 C -0.102 4.102 14 C -0.155 4.155 15 O -0.351 6.351 16 Si 0.822 3.178 17 H -0.178 1.178 18 H -0.179 1.179 19 H -0.182 1.182 20 C -0.171 4.171 21 C -0.004 4.004 22 C -0.523 4.523 23 H 0.087 0.913 24 H 0.071 0.929 25 H 0.096 0.904 26 H 0.098 0.902 27 H 0.057 0.943 28 H 0.080 0.920 29 H 0.121 0.879 30 H 0.110 0.890 31 H 0.144 0.856 32 H 0.084 0.916 33 H 0.145 0.855 34 H 0.109 0.891 35 H 0.283 0.717 36 H 0.164 0.836 37 H 0.242 0.758 38 H 0.165 0.835 39 H 0.070 0.930 40 H 0.149 0.851 41 H 0.111 0.889 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.941 -4.675 7.923 9.402 hybrid contribution -1.009 0.288 -1.198 1.593 sum 0.932 -4.387 6.725 8.083 Atomic orbital electron populations 1.26355 1.22480 1.04577 1.03647 0.78704 0.65282 0.65112 0.67491 1.27274 1.06536 1.22328 1.02540 1.26058 1.00752 1.07958 1.13508 1.21204 0.95416 1.01854 1.01057 1.21076 0.99772 1.04385 0.80388 1.47464 1.61359 1.11323 1.13770 1.17086 0.77238 0.81176 0.85312 1.90787 1.54897 1.77740 1.21781 1.21528 1.10780 0.98151 0.95607 1.26575 0.93456 0.90071 0.94632 1.83756 1.60081 1.24798 1.38065 1.22983 1.05962 0.95070 0.86152 1.24668 0.94659 0.79442 1.16742 1.86555 1.38855 1.49378 1.60303 0.84906 0.79971 0.80438 0.72492 1.17755 1.17941 1.18227 1.22551 1.00985 0.93661 0.99895 1.21666 0.92033 0.91171 0.95520 1.27624 1.00857 1.07824 1.16006 0.91251 0.92923 0.90431 0.90232 0.94343 0.92021 0.87887 0.88996 0.85625 0.91558 0.85454 0.89056 0.71676 0.83593 0.75751 0.83537 0.93008 0.85086 0.88907 0.93183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 -0.11 8.65 113.37 0.98 0.87 16 2 Si 1.04 -2.24 9.98 68.60 0.68 -1.55 16 3 C -0.48 -2.57 6.83 113.37 0.77 -1.80 16 4 C -0.39 3.64 4.72 72.78 0.34 3.98 16 5 C -0.16 1.75 4.30 29.24 0.13 1.87 16 6 C 0.06 -0.64 4.42 84.27 0.37 -0.27 16 7 N -0.61 0.50 1.62 -837.27 -1.36 -0.86 16 8 C 0.60 4.61 4.17 86.65 0.36 4.97 16 9 O -0.57 -9.79 15.42 -4.07 -0.06 -9.86 16 10 C -0.26 -1.28 4.60 -18.99 -0.09 -1.37 16 11 C 0.02 -0.04 8.69 67.39 0.59 0.54 16 12 O -0.17 -0.05 8.90 4.49 0.04 -0.01 16 13 C -0.05 -0.13 6.18 24.76 0.15 0.03 16 14 C -0.05 0.05 2.97 71.24 0.21 0.26 16 15 O -0.54 -0.37 12.88 -148.98 -1.92 -2.29 16 16 Si 1.00 -2.46 27.38 68.60 1.88 -0.58 16 17 H -0.25 0.41 7.11 99.48 0.71 1.11 16 18 H -0.26 0.26 7.11 99.48 0.71 0.97 16 19 H -0.26 0.10 7.11 99.48 0.71 0.81 16 20 C -0.15 -1.05 10.91 23.65 0.26 -0.80 16 21 C 0.12 -0.17 5.73 87.90 0.50 0.33 16 22 C -0.44 -0.59 5.02 73.13 0.37 -0.22 16 23 H 0.07 -0.02 7.96 -2.38 -0.02 -0.04 16 24 H 0.05 0.17 7.96 -2.39 -0.02 0.15 16 25 H 0.08 -0.14 7.96 -2.39 -0.02 -0.16 16 26 H 0.08 0.32 1.93 -2.39 0.00 0.31 16 27 H 0.04 0.47 7.25 -2.38 -0.02 0.45 16 28 H 0.06 0.27 7.96 -2.39 -0.02 0.25 16 29 H 0.10 -1.30 7.90 -2.39 -0.02 -1.32 16 30 H 0.09 -0.90 7.95 -2.39 -0.02 -0.92 16 31 H 0.13 -2.09 8.14 -2.39 -0.02 -2.11 16 32 H 0.07 -0.55 4.11 -2.39 -0.01 -0.56 16 33 H 0.13 -1.98 7.17 -2.39 -0.02 -2.00 16 34 H 0.09 -1.12 5.18 -2.38 -0.01 -1.13 16 35 H 0.27 -2.77 3.29 -2.91 -0.01 -2.78 16 36 H 0.15 -0.53 7.96 -2.38 -0.02 -0.55 16 37 H 0.39 -2.22 8.70 -74.06 -0.64 -2.87 16 38 H 0.15 1.37 8.06 -2.91 -0.02 1.34 16 39 H 0.05 0.16 8.14 -2.39 -0.02 0.14 16 40 H 0.13 -1.30 7.17 -2.39 -0.02 -1.32 16 41 H 0.09 -0.19 8.00 -2.39 -0.02 -0.21 16 42 H 0.05 0.45 7.47 -2.39 -0.02 0.43 16 Total: 0.00 -22.13 314.98 5.37 -16.76 By element: Atomic # 1 Polarization: -11.15 SS G_CDS: 1.16 Total: -10.00 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: 4.95 Total: 8.40 kcal Atomic # 7 Polarization: 0.50 SS G_CDS: -1.36 Total: -0.86 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: -1.94 Total: -12.16 kcal Atomic # 14 Polarization: -4.70 SS G_CDS: 2.56 Total: -2.14 kcal Total: -22.13 5.37 -16.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915400_13456056.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.881 kcal (2) G-P(sol) polarization free energy of solvation -22.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds