Wall clock time and date at job start Thu Mar 4 2021 18:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37870 * 126.45516 * 2 1 4 4 C 1.46677 * 126.23582 * 0.02562 * 3 2 1 5 5 O 1.21697 * 119.99805 * 256.71518 * 4 3 2 6 6 N 1.34770 * 120.00066 * 76.71557 * 4 3 2 7 7 C 1.45485 * 116.96668 * 4.77313 * 6 4 3 8 8 C 1.52931 * 105.50239 * 81.14228 * 7 6 4 9 9 C 1.54089 * 108.12786 * 102.39779 * 8 7 6 10 10 Si 1.86978 * 109.19516 * 321.33284 * 9 8 7 11 11 C 1.86300 * 109.01703 * 199.18395 * 10 9 8 12 12 C 1.86295 * 108.95959 * 80.32574 * 10 9 8 13 13 C 1.85326 * 111.77135 * 319.77052 * 10 9 8 14 14 C 1.42431 * 116.96668 * 185.03616 * 6 4 3 15 15 N 1.37658 * 107.53113 * 180.02562 * 3 2 1 16 16 C 1.35528 * 108.64463 * 359.97438 * 15 3 2 17 17 C 1.50699 * 125.56543 * 179.97438 * 16 15 3 18 18 O 1.42909 * 109.46946 * 65.00381 * 17 16 15 19 19 Si 1.86305 * 109.47259 * 185.00070 * 17 16 15 20 20 H 1.48497 * 109.47037 * 60.00597 * 19 17 16 21 21 H 1.48500 * 109.46862 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47206 * 300.00268 * 19 17 16 23 23 C 1.35455 * 108.87340 * 0.26333 * 16 15 3 24 24 H 1.09003 * 109.46890 * 90.00632 * 1 2 3 25 25 H 1.09003 * 109.47630 * 209.99757 * 1 2 3 26 26 H 1.08999 * 109.47666 * 330.00564 * 1 2 3 27 27 H 1.08998 * 110.17858 * 200.04475 * 7 6 4 28 28 H 1.08997 * 110.17597 * 321.91477 * 7 6 4 29 29 H 1.09000 * 109.78092 * 342.70637 * 8 7 6 30 30 H 1.09004 * 109.70600 * 222.04837 * 8 7 6 31 31 H 1.09004 * 109.51734 * 201.41478 * 9 8 7 32 32 H 1.09005 * 109.56445 * 81.27538 * 9 8 7 33 33 H 1.09005 * 109.46875 * 182.26858 * 11 10 9 34 34 H 1.09005 * 109.47339 * 302.25750 * 11 10 9 35 35 H 1.09003 * 109.47722 * 62.26741 * 11 10 9 36 36 H 1.09001 * 109.47077 * 278.60944 * 12 10 9 37 37 H 1.09001 * 109.47669 * 38.60692 * 12 10 9 38 38 H 1.08998 * 109.47685 * 158.61491 * 12 10 9 39 39 H 1.09001 * 109.51328 * 324.76461 * 13 10 9 40 40 H 1.09003 * 109.51415 * 204.60669 * 13 10 9 41 41 H 1.09001 * 109.85642 * 3.72085 * 14 6 4 42 42 H 1.08994 * 109.86072 * 124.67207 * 14 6 4 43 43 H 0.96994 * 125.67395 * 179.97438 * 15 3 2 44 44 H 1.08998 * 109.47419 * 305.00834 * 17 16 15 45 45 H 0.96695 * 113.99725 * 180.02562 * 18 17 16 46 46 H 1.08001 * 126.07133 * 179.71476 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3262 1.1089 0.0000 4 6 1.8898 2.5093 0.0005 5 8 1.9396 3.1625 -1.0251 6 7 1.4337 3.0725 1.1367 7 6 1.5021 2.2668 2.3462 8 6 2.9433 2.3945 2.8414 9 6 2.9591 3.3867 4.0202 10 14 1.7707 4.7853 3.6624 11 6 2.1971 6.2372 4.7491 12 6 0.0384 4.2226 4.0538 13 6 1.8473 5.3155 1.8883 14 6 0.9242 4.3991 1.0407 15 7 3.6284 0.6625 -0.0006 16 6 3.6218 -0.6928 -0.0004 17 6 4.8433 -1.5753 -0.0014 18 8 5.5640 -1.3925 1.2191 19 14 4.3220 -3.3574 -0.1537 20 1 3.5732 -3.5473 -1.4219 21 1 5.5257 -4.2269 -0.1541 22 1 3.4515 -3.7183 0.9940 23 6 2.3379 -1.1247 -0.0055 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5137 27 1 0.8114 2.6538 3.0953 28 1 1.2682 1.2268 2.1187 29 1 3.5779 2.7677 2.0376 30 1 3.3051 1.4216 3.1743 31 1 3.9652 3.7869 4.1459 32 1 2.6543 2.8743 4.9327 33 1 1.4837 7.0429 4.5754 34 1 2.1542 5.9333 5.7950 35 1 3.2028 6.5851 4.5127 36 1 -0.3519 3.6407 3.2189 37 1 0.0510 3.6056 4.9523 38 1 -0.5975 5.0923 4.2191 39 1 2.8726 5.2331 1.5277 40 1 1.5123 6.3493 1.8025 41 1 0.9333 4.7248 0.0005 42 1 -0.0930 4.4342 1.4306 43 1 4.4190 1.2244 -0.0011 44 1 5.4823 -1.3103 -0.8437 45 1 6.3645 -1.9305 1.2874 46 1 2.0136 -2.1548 -0.0110 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915400_13940406.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 18:27:33 Heat of formation + Delta-G solvation = -40.023783 kcal Electronic energy + Delta-G solvation = -25448.714517 eV Core-core repulsion = 22077.380033 eV Total energy + Delta-G solvation = -3371.334485 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 310.163 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.76266 -41.00215 -37.93315 -37.66830 -34.11227 -33.77125 -32.27184 -30.97381 -29.20662 -28.75217 -28.19905 -26.87440 -26.72886 -23.87971 -22.76410 -21.54550 -21.39917 -20.02935 -18.82568 -18.51165 -18.04125 -16.96047 -16.47696 -16.07142 -15.49724 -15.35785 -15.25131 -15.11095 -14.95353 -14.57444 -14.44088 -14.21497 -14.13899 -13.75298 -13.66627 -13.60412 -13.54967 -13.29563 -13.17284 -12.98257 -12.92550 -12.71840 -12.57554 -12.45227 -12.05322 -11.94282 -11.89461 -11.82368 -11.22216 -10.77972 -10.50075 -10.47527 -10.43459 -9.81937 -9.71699 -9.08165 0.73890 0.99859 1.25372 1.52669 1.58207 1.67040 1.84360 1.89250 1.91329 1.96225 2.02412 2.47599 2.65210 3.37567 3.39629 3.88423 3.89931 4.03760 4.08789 4.17462 4.20836 4.32018 4.34214 4.45757 4.54835 4.62481 4.67836 4.70969 4.78353 4.80320 4.82168 4.82888 4.87142 4.90475 4.92607 5.07395 5.12693 5.21026 5.26545 5.34234 5.42915 5.57846 5.61153 5.67046 5.77180 5.89043 6.06947 6.37204 6.75541 6.93270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.119 4.119 3 C -0.045 4.045 4 C 0.580 3.420 5 O -0.573 6.573 6 N -0.577 5.577 7 C 0.062 3.938 8 C -0.118 4.118 9 C -0.421 4.421 10 Si 1.063 2.937 11 C -0.463 4.463 12 C -0.468 4.468 13 C -0.441 4.441 14 C 0.108 3.892 15 N -0.510 5.510 16 C 0.051 3.949 17 C -0.066 4.066 18 O -0.563 6.563 19 Si 1.008 2.992 20 H -0.262 1.262 21 H -0.251 1.251 22 H -0.263 1.263 23 C -0.208 4.208 24 H 0.065 0.935 25 H 0.087 0.913 26 H 0.064 0.936 27 H 0.135 0.865 28 H 0.096 0.904 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.094 0.906 41 H 0.078 0.922 42 H 0.098 0.902 43 H 0.423 0.577 44 H 0.093 0.907 45 H 0.402 0.598 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.502 -2.557 4.549 5.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.126 4.126 3 C -0.160 4.160 4 C 0.367 3.633 5 O -0.452 6.452 6 N -0.307 5.307 7 C -0.059 4.059 8 C -0.156 4.156 9 C -0.505 4.505 10 Si 1.254 2.746 11 C -0.570 4.570 12 C -0.575 4.575 13 C -0.525 4.525 14 C -0.015 4.015 15 N -0.104 5.104 16 C -0.066 4.066 17 C -0.176 4.176 18 O -0.373 6.373 19 Si 0.830 3.170 20 H -0.187 1.187 21 H -0.175 1.175 22 H -0.187 1.187 23 C -0.232 4.232 24 H 0.084 0.916 25 H 0.105 0.895 26 H 0.083 0.917 27 H 0.152 0.848 28 H 0.115 0.885 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.107 0.893 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.081 0.919 40 H 0.113 0.887 41 H 0.096 0.904 42 H 0.116 0.884 43 H 0.261 0.739 44 H 0.111 0.889 45 H 0.253 0.747 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.058 -2.494 4.087 4.788 hybrid contribution 1.277 0.617 -0.385 1.469 sum 1.218 -1.877 3.702 4.325 Atomic orbital electron populations 1.20332 0.88473 1.03404 1.02460 1.19938 0.96250 0.90417 1.06020 1.19860 0.85065 0.93094 1.18018 1.17642 0.77188 0.84745 0.83757 1.90818 1.56336 1.64039 1.33992 1.46974 1.60487 1.15083 1.08186 1.22673 0.99211 0.97365 0.86611 1.21859 0.95688 1.00090 0.97966 1.26710 1.11720 1.11086 1.01022 0.78408 0.66733 0.65390 0.64049 1.26296 1.05124 1.14985 1.10544 1.26675 1.18214 1.06594 1.05986 1.27156 1.01795 1.04258 1.19328 1.21101 0.98069 0.80072 1.02251 1.41688 1.06618 1.06612 1.55516 1.20109 0.95796 0.82523 1.08193 1.24590 0.92831 1.09638 0.90501 1.86452 1.43309 1.70476 1.37021 0.84833 0.80274 0.71683 0.80256 1.18659 1.17494 1.18737 1.20661 0.91040 0.99351 1.12169 0.91631 0.89453 0.91714 0.84796 0.88546 0.93092 0.91529 0.91061 0.89324 0.91065 0.90944 0.91825 0.90248 0.89988 0.90381 0.91894 0.88734 0.90364 0.88376 0.73899 0.88925 0.74726 0.82848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.12 9.96 71.24 0.71 0.59 16 2 C -0.12 -0.62 5.16 -19.56 -0.10 -0.72 16 3 C -0.05 -0.31 4.99 40.35 0.20 -0.11 16 4 C 0.58 5.18 6.48 86.45 0.56 5.74 16 5 O -0.57 -9.79 16.12 -4.34 -0.07 -9.86 16 6 N -0.58 -1.45 2.18 -834.47 -1.82 -3.27 16 7 C 0.06 -0.09 5.22 86.55 0.45 0.36 16 8 C -0.12 0.07 5.47 30.94 0.17 0.24 16 9 C -0.42 1.47 5.09 72.35 0.37 1.84 16 10 Si 1.06 -6.07 10.05 68.60 0.69 -5.39 16 11 C -0.46 1.57 8.65 113.37 0.98 2.55 16 12 C -0.47 3.06 7.38 113.37 0.84 3.90 16 13 C -0.44 0.54 4.96 72.76 0.36 0.90 16 14 C 0.11 0.16 5.82 87.90 0.51 0.67 16 15 N -0.51 -2.23 6.10 -171.93 -1.05 -3.28 16 16 C 0.05 0.16 6.50 41.34 0.27 0.43 16 17 C -0.07 0.15 3.07 71.24 0.22 0.37 16 18 O -0.56 1.34 12.86 -148.98 -1.92 -0.58 16 19 Si 1.01 -2.91 25.84 68.60 1.77 -1.14 16 20 H -0.26 0.11 7.11 99.48 0.71 0.82 16 21 H -0.25 0.96 7.11 99.48 0.71 1.66 16 22 H -0.26 -0.05 7.11 99.48 0.71 0.66 16 23 C -0.21 -0.84 9.27 22.01 0.20 -0.63 16 24 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 25 H 0.09 -0.19 8.14 -2.39 -0.02 -0.20 16 26 H 0.06 0.02 7.71 -2.39 -0.02 0.00 16 27 H 0.13 -0.77 2.84 -2.39 -0.01 -0.78 16 28 H 0.10 -0.07 5.57 -2.39 -0.01 -0.08 16 29 H 0.05 0.11 7.39 -2.39 -0.02 0.09 16 30 H 0.07 0.04 8.14 -2.38 -0.02 0.03 16 31 H 0.07 -0.18 7.97 -2.39 -0.02 -0.20 16 32 H 0.09 -0.46 7.97 -2.38 -0.02 -0.48 16 33 H 0.07 -0.25 7.96 -2.38 -0.02 -0.27 16 34 H 0.07 -0.26 7.96 -2.38 -0.02 -0.28 16 35 H 0.06 -0.14 7.96 -2.39 -0.02 -0.16 16 36 H 0.08 -0.54 4.90 -2.39 -0.01 -0.55 16 37 H 0.08 -0.61 7.96 -2.39 -0.02 -0.63 16 38 H 0.08 -0.51 7.96 -2.39 -0.02 -0.53 16 39 H 0.06 0.13 7.96 -2.39 -0.02 0.11 16 40 H 0.09 -0.27 7.96 -2.39 -0.02 -0.29 16 41 H 0.08 0.54 6.57 -2.39 -0.02 0.52 16 42 H 0.10 -0.33 6.56 -2.39 -0.02 -0.34 16 43 H 0.42 0.80 8.96 -92.71 -0.83 -0.03 16 44 H 0.09 -0.54 7.96 -2.39 -0.02 -0.56 16 45 H 0.40 -4.55 8.74 -74.06 -0.65 -5.19 16 46 H 0.15 0.14 6.19 -2.91 -0.02 0.12 16 Total: 0.00 -17.42 351.97 3.63 -13.80 By element: Atomic # 1 Polarization: -6.71 SS G_CDS: 0.28 Total: -6.43 kcal Atomic # 6 Polarization: 10.40 SS G_CDS: 5.74 Total: 16.14 kcal Atomic # 7 Polarization: -3.67 SS G_CDS: -2.87 Total: -6.54 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: -1.99 Total: -10.44 kcal Atomic # 14 Polarization: -8.99 SS G_CDS: 2.46 Total: -6.52 kcal Total: -17.42 3.63 -13.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915400_13940406.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.227 kcal (2) G-P(sol) polarization free energy of solvation -17.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds