Wall clock time and date at job start Thu Mar 4 2021 18:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86294 * 1 3 3 C 1.86303 * 109.44015 * 2 1 4 4 C 1.88799 * 109.44147 * 119.92423 * 2 1 3 5 5 C 1.49874 * 108.19207 * 50.78233 * 4 2 1 6 6 C 1.54333 * 114.58760 * 84.45359 * 5 4 2 7 7 N 1.47121 * 117.93537 * 314.26075 * 6 5 4 8 8 C 1.34772 * 118.22834 * 134.72079 * 7 6 5 9 9 O 1.21284 * 119.99979 * 179.97438 * 8 7 6 10 10 C 1.50705 * 120.00258 * 359.97438 * 8 7 6 11 11 C 1.50707 * 109.46966 * 179.97438 * 10 8 7 12 12 C 1.34849 * 125.88836 * 274.68271 * 11 10 8 13 13 C 1.40891 * 107.41275 * 179.88954 * 12 11 10 14 14 C 1.34846 * 107.41805 * 0.38061 * 13 12 11 15 15 C 1.50705 * 125.88734 * 179.73153 * 14 13 12 16 16 O 1.42896 * 109.46789 * 120.04433 * 15 14 13 17 17 Si 1.86299 * 109.47198 * 0.04607 * 15 14 13 18 18 H 1.48492 * 109.47481 * 59.99588 * 17 15 14 19 19 H 1.48498 * 109.46843 * 180.02562 * 17 15 14 20 20 H 1.48509 * 109.47016 * 299.99639 * 17 15 14 21 21 N 1.36335 * 125.89031 * 95.00177 * 11 10 8 22 22 C 1.42774 * 123.53698 * 314.70878 * 7 6 5 23 23 C 1.54950 * 107.21088 * 96.96223 * 22 7 6 24 24 H 1.08996 * 109.47250 * 300.07869 * 1 2 3 25 25 H 1.09005 * 109.46871 * 60.07779 * 1 2 3 26 26 H 1.08999 * 109.47512 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46999 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47108 * 299.92458 * 3 2 1 29 29 H 1.08996 * 109.47097 * 59.92409 * 3 2 1 30 30 H 1.09002 * 109.72754 * 170.47128 * 4 2 1 31 31 H 1.08998 * 109.72375 * 291.09767 * 4 2 1 32 32 H 1.09008 * 108.45437 * 205.85374 * 5 4 2 33 33 H 1.09000 * 108.45658 * 323.19464 * 5 4 2 34 34 H 1.09001 * 107.76556 * 192.10691 * 6 5 4 35 35 H 1.08998 * 107.69398 * 76.36579 * 6 5 4 36 36 H 1.09006 * 109.46383 * 299.99380 * 10 8 7 37 37 H 1.08998 * 109.47285 * 59.99692 * 10 8 7 38 38 H 1.08003 * 126.28958 * 0.03533 * 12 11 10 39 39 H 1.08002 * 126.28390 * 180.13241 * 13 12 11 40 40 H 1.08995 * 109.46993 * 240.04025 * 15 14 13 41 41 H 0.96702 * 114.00335 * 300.00068 * 16 15 14 42 42 H 0.97006 * 125.63867 * 359.97438 * 21 11 10 43 43 H 1.08997 * 109.90809 * 337.53291 * 22 7 6 44 44 H 1.09004 * 109.97040 * 216.42889 * 22 7 6 45 45 H 1.09001 * 109.04513 * 163.35044 * 23 22 7 46 46 H 1.09000 * 109.04663 * 44.46738 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4830 1.7568 0.0000 4 6 2.4913 -0.8881 1.5430 5 6 1.7982 -2.2138 1.6348 6 6 2.4535 -3.3398 0.8074 7 7 2.8527 -3.0359 -0.5756 8 6 4.0678 -3.4434 -0.9925 9 8 4.4294 -3.2104 -2.1265 10 6 4.9772 -4.1886 -0.0498 11 6 6.2642 -4.5280 -0.7566 12 6 6.4786 -5.6102 -1.5320 13 6 7.8073 -5.5402 -1.9954 14 6 8.3568 -4.4225 -1.4787 15 6 9.7692 -3.9472 -1.7032 16 8 9.7455 -2.6563 -2.3157 17 14 10.6584 -5.1468 -2.8170 18 1 9.9511 -5.2302 -4.1200 19 1 12.0503 -4.6787 -3.0378 20 1 10.6830 -6.4884 -2.1805 21 7 7.4144 -3.7970 -0.7173 22 6 2.0222 -2.3328 -1.4999 23 6 2.4633 -0.8476 -1.4748 24 1 -0.3633 0.5150 0.8892 25 1 -0.3633 0.5127 -0.8907 26 1 -0.3634 -1.0276 0.0005 27 1 3.5730 1.7574 0.0005 28 1 2.1205 2.2700 -0.8906 29 1 2.1183 2.2708 0.8893 30 1 3.5680 -1.0404 1.4671 31 1 2.2655 -0.2929 2.4277 32 1 1.7766 -2.5202 2.6807 33 1 0.7702 -2.0900 1.2943 34 1 1.7571 -4.1777 0.7758 35 1 3.3421 -3.6714 1.3446 36 1 5.1922 -3.5639 0.8173 37 1 4.4889 -5.1070 0.2761 38 1 5.7626 -6.3864 -1.7583 39 1 8.2970 -6.2533 -2.6421 40 1 10.2883 -3.8860 -0.7468 41 1 9.2979 -2.6356 -3.1726 42 1 7.5414 -2.9688 -0.2285 43 1 0.9782 -2.4150 -1.1977 44 1 2.1514 -2.7416 -2.5021 45 1 2.0706 -0.3449 -2.3586 46 1 3.5521 -0.7996 -1.4942 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915400_14644196.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 18:27:44 Heat of formation + Delta-G solvation = -59.797593 kcal Electronic energy + Delta-G solvation = -24486.627406 eV Core-core repulsion = 21114.435465 eV Total energy + Delta-G solvation = -3372.191941 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 310.163 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.38515 -41.04632 -37.77180 -37.42821 -34.12970 -33.43136 -31.97136 -31.48055 -29.38397 -28.83644 -28.37518 -27.04359 -25.48814 -23.91732 -22.32726 -21.41631 -21.28834 -19.81491 -18.83439 -18.35126 -17.31593 -16.99512 -16.56871 -16.31515 -15.62538 -15.43952 -15.14330 -14.93263 -14.82660 -14.44602 -14.37965 -14.22332 -14.13676 -13.95878 -13.92390 -13.51035 -13.45407 -13.33198 -13.16029 -13.10392 -12.88835 -12.74995 -12.54000 -12.26844 -12.12062 -12.04303 -11.80039 -11.66684 -10.85026 -10.76292 -10.63309 -10.58226 -10.16896 -9.82380 -9.59799 -8.96949 1.04657 1.19537 1.52556 1.56500 1.60304 1.84908 1.90516 1.90832 1.95964 2.02170 2.21668 2.46975 2.75339 3.49519 3.58882 3.76178 3.82166 3.90352 4.14372 4.17146 4.33637 4.39623 4.40789 4.47480 4.50700 4.56030 4.61512 4.72170 4.76390 4.76575 4.76877 4.86340 4.90537 4.96491 5.04882 5.07499 5.22191 5.24597 5.34945 5.38362 5.51412 5.56481 5.67930 5.81505 5.96288 6.10133 6.34147 6.56011 6.66955 7.21611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.456 4.456 2 Si 1.074 2.926 3 C -0.471 4.471 4 C -0.400 4.400 5 C -0.121 4.121 6 C 0.089 3.911 7 N -0.595 5.595 8 C 0.503 3.497 9 O -0.573 6.573 10 C -0.070 4.070 11 C 0.035 3.965 12 C -0.201 4.201 13 C -0.215 4.215 14 C -0.017 4.017 15 C -0.060 4.060 16 O -0.557 6.557 17 Si 1.015 2.985 18 H -0.264 1.264 19 H -0.269 1.269 20 H -0.255 1.255 21 N -0.533 5.533 22 C 0.128 3.872 23 C -0.463 4.463 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.077 0.923 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.129 0.871 37 H 0.142 0.858 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.128 0.872 41 H 0.388 0.612 42 H 0.421 0.579 43 H 0.104 0.896 44 H 0.053 0.947 45 H 0.075 0.925 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.682 -0.538 6.691 7.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.563 4.563 2 Si 1.264 2.736 3 C -0.576 4.576 4 C -0.487 4.487 5 C -0.159 4.159 6 C -0.033 4.033 7 N -0.327 5.327 8 C 0.291 3.709 9 O -0.452 6.452 10 C -0.110 4.110 11 C -0.079 4.079 12 C -0.225 4.225 13 C -0.240 4.240 14 C -0.131 4.131 15 C -0.170 4.170 16 O -0.364 6.364 17 Si 0.837 3.163 18 H -0.188 1.188 19 H -0.193 1.193 20 H -0.179 1.179 21 N -0.128 5.128 22 C 0.004 3.996 23 C -0.546 4.546 24 H 0.092 0.908 25 H 0.083 0.917 26 H 0.096 0.904 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.105 0.895 32 H 0.113 0.887 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.116 0.884 36 H 0.146 0.854 37 H 0.160 0.840 38 H 0.156 0.844 39 H 0.157 0.843 40 H 0.146 0.854 41 H 0.237 0.763 42 H 0.259 0.741 43 H 0.122 0.878 44 H 0.071 0.929 45 H 0.094 0.906 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.739 -0.705 6.151 6.770 hybrid contribution -0.408 0.732 -0.628 1.047 sum -3.148 0.027 5.523 6.357 Atomic orbital electron populations 1.26280 1.20744 1.04838 1.04487 0.77954 0.66285 0.64271 0.65049 1.26396 1.05814 1.21148 1.04263 1.25600 1.04729 1.03383 1.14967 1.21068 1.00107 0.93745 1.00967 1.22202 1.02842 0.98574 0.79643 1.47238 1.15827 1.56316 1.13285 1.21079 0.82444 0.79116 0.88215 1.90739 1.74528 1.57755 1.22221 1.20370 0.89651 1.03680 0.97269 1.19909 0.88478 0.94430 1.05070 1.20801 0.97289 1.00774 1.03683 1.20873 0.96415 0.99874 1.06866 1.20993 0.93561 0.96948 1.01568 1.24847 0.93596 0.92837 1.05733 1.86442 1.81039 1.29281 1.39631 0.84737 0.77480 0.76433 0.77643 1.18816 1.19331 1.17919 1.41841 1.09739 1.21828 1.39441 1.20664 0.95261 0.90363 0.93263 1.27018 1.05791 1.03218 1.18620 0.90812 0.91719 0.90403 0.92206 0.92021 0.90820 0.91124 0.89475 0.88747 0.91074 0.89909 0.88354 0.85356 0.84050 0.84398 0.84252 0.85448 0.76300 0.74146 0.87829 0.92885 0.90620 0.92621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.52 8.35 113.37 0.95 3.47 16 2 Si 1.07 -6.02 10.48 68.60 0.72 -5.30 16 3 C -0.47 0.70 8.65 113.37 0.98 1.68 16 4 C -0.40 3.05 4.83 70.98 0.34 3.39 16 5 C -0.12 1.20 5.32 30.04 0.16 1.35 16 6 C 0.09 -0.79 5.83 86.71 0.51 -0.28 16 7 N -0.59 1.01 2.45 -822.72 -2.01 -1.01 16 8 C 0.50 1.80 7.19 87.66 0.63 2.43 16 9 O -0.57 -8.11 15.25 -3.04 -0.05 -8.15 16 10 C -0.07 0.20 4.52 29.11 0.13 0.33 16 11 C 0.04 0.14 5.66 41.08 0.23 0.37 16 12 C -0.20 -1.43 10.77 22.14 0.24 -1.19 16 13 C -0.22 -1.51 9.37 22.14 0.21 -1.30 16 14 C -0.02 -0.08 6.50 41.08 0.27 0.19 16 15 C -0.06 -0.08 3.08 71.24 0.22 0.14 16 16 O -0.56 -1.77 12.88 -148.98 -1.92 -3.69 16 17 Si 1.01 1.01 25.87 68.60 1.77 2.78 16 18 H -0.26 -0.82 7.11 99.48 0.71 -0.11 16 19 H -0.27 -0.80 7.11 99.48 0.71 -0.09 16 20 H -0.26 -0.48 7.11 99.48 0.71 0.23 16 21 N -0.53 -1.83 6.07 -171.12 -1.04 -2.87 16 22 C 0.13 0.04 5.36 87.73 0.47 0.51 16 23 C -0.46 -0.21 4.47 72.65 0.32 0.12 16 24 H 0.07 -0.43 7.96 -2.39 -0.02 -0.45 16 25 H 0.06 -0.26 7.96 -2.38 -0.02 -0.28 16 26 H 0.08 -0.55 6.53 -2.39 -0.02 -0.56 16 27 H 0.06 0.00 7.96 -2.39 -0.02 -0.02 16 28 H 0.06 -0.02 7.96 -2.39 -0.02 -0.03 16 29 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 30 H 0.07 -0.46 7.90 -2.39 -0.02 -0.48 16 31 H 0.09 -0.75 7.99 -2.39 -0.02 -0.77 16 32 H 0.09 -1.15 8.14 -2.38 -0.02 -1.17 16 33 H 0.07 -0.76 5.94 -2.39 -0.01 -0.78 16 34 H 0.08 -0.92 8.14 -2.39 -0.02 -0.94 16 35 H 0.10 -1.22 5.49 -2.39 -0.01 -1.23 16 36 H 0.13 -1.11 7.44 -2.38 -0.02 -1.13 16 37 H 0.14 -1.13 7.93 -2.39 -0.02 -1.15 16 38 H 0.14 0.71 8.06 -2.91 -0.02 0.69 16 39 H 0.14 0.67 6.22 -2.91 -0.02 0.65 16 40 H 0.13 -0.21 7.96 -2.39 -0.02 -0.23 16 41 H 0.39 -0.38 8.70 -74.06 -0.64 -1.02 16 42 H 0.42 -0.19 8.96 -92.70 -0.83 -1.02 16 43 H 0.10 -0.53 7.14 -2.39 -0.02 -0.54 16 44 H 0.05 0.33 7.46 -2.39 -0.02 0.31 16 45 H 0.07 0.09 7.89 -2.39 -0.02 0.07 16 46 H 0.05 0.31 7.28 -2.39 -0.02 0.29 16 Total: 0.00 -20.40 359.23 3.39 -17.00 By element: Atomic # 1 Polarization: -10.23 SS G_CDS: 0.26 Total: -9.97 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: 5.66 Total: 11.21 kcal Atomic # 7 Polarization: -0.83 SS G_CDS: -3.05 Total: -3.88 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: -1.97 Total: -11.84 kcal Atomic # 14 Polarization: -5.01 SS G_CDS: 2.49 Total: -2.52 kcal Total: -20.40 3.39 -17.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915400_14644196.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.793 kcal (2) G-P(sol) polarization free energy of solvation -20.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds