Wall clock time and date at job start Thu Mar 4 2021 18:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86304 * 1 3 3 C 1.86295 * 108.94348 * 2 1 4 4 C 1.86976 * 109.01887 * 241.13147 * 2 1 3 5 5 C 1.54089 * 109.19669 * 199.18270 * 4 2 1 6 6 C 1.52892 * 108.12568 * 321.34270 * 5 4 2 7 7 N 1.45476 * 105.52784 * 102.39779 * 6 5 4 8 8 C 1.34775 * 116.96417 * 81.14876 * 7 6 5 9 9 O 1.21284 * 120.00306 * 4.98662 * 8 7 6 10 10 C 1.50698 * 120.00022 * 184.98257 * 8 7 6 11 11 C 1.53540 * 109.82746 * 275.27266 * 10 8 7 12 12 C 1.53031 * 108.56628 * 179.44867 * 11 10 8 13 13 C 1.50205 * 110.31916 * 49.56906 * 12 11 10 14 14 C 1.50695 * 118.54871 * 159.92787 * 13 12 11 15 15 O 1.42912 * 109.47320 * 69.99960 * 14 13 12 16 16 Si 1.86302 * 109.47331 * 189.99791 * 14 13 12 17 17 H 1.48502 * 109.46591 * 59.99989 * 16 14 13 18 18 H 1.48498 * 109.47095 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47112 * 300.00107 * 16 14 13 20 20 C 1.31117 * 122.90366 * 340.20668 * 13 12 11 21 21 N 1.38920 * 121.85248 * 359.88930 * 20 13 12 22 22 C 1.42433 * 126.06564 * 260.86381 * 7 6 5 23 23 C 1.55252 * 107.47649 * 64.49957 * 22 7 6 24 24 H 1.09005 * 109.46969 * 301.13102 * 1 2 3 25 25 H 1.08993 * 109.47138 * 61.12701 * 1 2 3 26 26 H 1.08997 * 109.47400 * 181.13295 * 1 2 3 27 27 H 1.09005 * 109.47006 * 159.69321 * 3 2 1 28 28 H 1.09003 * 109.47269 * 279.69349 * 3 2 1 29 29 H 1.09000 * 109.47544 * 39.69035 * 3 2 1 30 30 H 1.08998 * 109.51465 * 319.10155 * 4 2 1 31 31 H 1.09000 * 109.51540 * 79.27026 * 4 2 1 32 32 H 1.09007 * 109.73192 * 81.05728 * 5 4 2 33 33 H 1.09001 * 109.73586 * 201.75002 * 5 4 2 34 34 H 1.09005 * 110.17972 * 343.47791 * 6 5 4 35 35 H 1.08998 * 110.42983 * 221.44976 * 6 5 4 36 36 H 1.09008 * 109.81455 * 36.13328 * 10 8 7 37 37 H 1.09005 * 109.62178 * 59.71943 * 11 10 8 38 38 H 1.09007 * 109.62036 * 299.16842 * 11 10 8 39 39 H 1.09006 * 109.33149 * 289.30997 * 12 11 10 40 40 H 1.09003 * 109.19427 * 169.74292 * 12 11 10 41 41 H 1.08999 * 109.47422 * 310.00010 * 14 13 12 42 42 H 0.96693 * 113.99511 * 180.02562 * 15 14 13 43 43 H 1.08005 * 119.07192 * 180.12320 * 20 13 12 44 44 H 0.96993 * 120.51383 * 166.92310 * 21 20 13 45 45 H 1.09005 * 109.85351 * 183.99086 * 22 7 6 46 46 H 1.08996 * 109.85956 * 305.00453 * 22 7 6 47 47 H 1.09007 * 109.51082 * 57.36446 * 23 22 7 48 48 H 1.08996 * 109.51220 * 177.52128 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4678 1.7621 0.0000 4 6 2.4724 -0.8534 -1.5480 5 6 3.9368 -1.2872 -1.3444 6 6 4.6548 -0.1862 -0.5634 7 7 4.7482 -0.6758 0.8033 8 6 5.7458 -1.5400 1.0761 9 8 6.5681 -1.8052 0.2249 10 6 5.8396 -2.1768 2.4387 11 6 6.5842 -1.2403 3.4010 12 6 6.6508 -1.9077 4.7765 13 6 7.1487 -3.3190 4.6479 14 6 7.7197 -3.9952 5.8676 15 8 6.6698 -4.2620 6.7997 16 14 8.5286 -5.5974 5.3680 17 1 9.6195 -5.3200 4.3994 18 1 9.0917 -6.2634 6.5698 19 1 7.5197 -6.4853 4.7364 20 6 7.1134 -3.9868 3.5200 21 7 6.6051 -3.4292 2.3536 22 6 3.8869 -0.3225 1.8813 23 6 2.4670 -0.8459 1.5344 24 1 -0.3633 0.5313 0.8797 25 1 -0.3633 0.4962 -0.8999 26 1 -0.3634 -1.0274 0.0203 27 1 3.4974 1.7928 0.3567 28 1 2.4221 2.1619 -1.0130 29 1 1.8379 2.3625 0.6563 30 1 1.8568 -1.7309 -1.7463 31 1 2.4102 -0.1658 -2.3914 32 1 3.9695 -2.2201 -0.7815 33 1 4.4183 -1.4239 -2.3127 34 1 4.0744 0.7359 -0.5937 35 1 5.6514 -0.0182 -0.9716 36 1 4.8393 -2.3803 2.8211 37 1 6.0486 -0.2941 3.4787 38 1 7.5942 -1.0629 3.0310 39 1 5.6561 -1.9153 5.2224 40 1 7.3287 -1.3429 5.4165 41 1 8.4602 -3.3434 6.3312 42 1 6.9655 -4.6972 7.6110 43 1 7.4866 -5.0000 3.4982 44 1 6.7562 -3.8575 1.4965 45 1 4.2377 -0.7868 2.8030 46 1 3.8639 0.7611 1.9971 47 1 2.5070 -1.9220 1.3652 48 1 1.7882 -0.6313 2.3597 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915400_15413834.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 18:27:55 Heat of formation + Delta-G solvation = -56.364705 kcal Electronic energy + Delta-G solvation = -25687.684963 eV Core-core repulsion = 22288.330404 eV Total energy + Delta-G solvation = -3399.354559 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.178 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.01328 -39.74981 -37.86332 -37.31479 -34.74412 -33.28475 -32.82508 -31.06316 -29.21263 -28.81060 -27.93072 -26.32238 -25.29474 -24.16312 -23.23718 -22.52214 -20.49443 -19.25887 -18.82127 -18.28952 -17.84236 -17.34086 -16.53484 -16.34958 -15.50799 -15.27501 -15.23814 -15.10133 -14.86178 -14.63762 -14.46899 -14.31730 -14.14048 -14.05407 -13.71840 -13.64750 -13.57361 -13.47964 -13.16227 -12.99913 -12.77254 -12.66020 -12.51278 -12.38880 -12.12490 -11.96663 -11.75262 -11.67945 -11.66351 -11.23813 -10.79273 -10.73263 -10.46652 -10.44952 -10.07575 -9.64929 -8.46510 1.24551 1.29991 1.40688 1.45548 1.52178 1.82498 1.91005 1.92211 1.94521 1.98903 2.57462 2.68325 3.30559 3.69426 3.72043 3.91971 3.97598 4.02800 4.06722 4.15552 4.23669 4.31512 4.39606 4.43528 4.54561 4.54881 4.62822 4.67797 4.75001 4.80803 4.81809 4.82852 4.85450 4.91555 4.96212 5.03318 5.08993 5.22119 5.25547 5.30122 5.38582 5.46178 5.57649 5.61018 5.65034 5.67445 6.16751 6.34813 6.74982 6.96404 7.03184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.465 4.465 2 Si 1.065 2.935 3 C -0.471 4.471 4 C -0.429 4.429 5 C -0.117 4.117 6 C 0.075 3.925 7 N -0.590 5.590 8 C 0.499 3.501 9 O -0.569 6.569 10 C 0.132 3.868 11 C -0.126 4.126 12 C -0.050 4.050 13 C -0.246 4.246 14 C -0.053 4.053 15 O -0.565 6.565 16 Si 0.963 3.037 17 H -0.268 1.268 18 H -0.260 1.260 19 H -0.273 1.273 20 C 0.119 3.881 21 N -0.739 5.739 22 C 0.093 3.907 23 C -0.439 4.439 24 H 0.074 0.926 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.133 0.867 35 H 0.073 0.927 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.390 0.610 43 H 0.127 0.873 44 H 0.404 0.596 45 H 0.105 0.895 46 H 0.101 0.899 47 H 0.073 0.927 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.311 3.381 3.392 5.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.571 4.571 2 Si 1.256 2.744 3 C -0.577 4.577 4 C -0.513 4.513 5 C -0.156 4.156 6 C -0.046 4.046 7 N -0.321 5.321 8 C 0.287 3.713 9 O -0.448 6.448 10 C 0.023 3.977 11 C -0.165 4.165 12 C -0.087 4.087 13 C -0.257 4.257 14 C -0.165 4.165 15 O -0.373 6.373 16 Si 0.791 3.209 17 H -0.192 1.192 18 H -0.184 1.184 19 H -0.198 1.198 20 C -0.001 4.001 21 N -0.371 5.371 22 C -0.029 4.029 23 C -0.526 4.526 24 H 0.093 0.907 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.098 0.902 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.150 0.850 35 H 0.092 0.908 36 H 0.126 0.874 37 H 0.122 0.878 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.240 0.760 43 H 0.144 0.856 44 H 0.239 0.761 45 H 0.123 0.877 46 H 0.119 0.881 47 H 0.092 0.908 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.957 2.866 2.235 4.686 hybrid contribution 0.307 -0.540 -0.260 0.673 sum -2.650 2.326 1.975 4.042 Atomic orbital electron populations 1.26322 1.22014 1.04195 1.04561 0.78375 0.65126 0.65962 0.64986 1.26721 1.06256 1.19453 1.05260 1.26865 0.99065 1.07947 1.17383 1.21793 0.95913 0.97931 0.99951 1.22265 1.02782 0.99347 0.80165 1.47038 1.29677 1.44311 1.11047 1.21088 0.80896 0.79845 0.89493 1.90696 1.41531 1.62703 1.49856 1.21261 0.97513 0.86304 0.92611 1.21951 1.00936 0.98437 0.95126 1.19976 1.01807 0.91453 0.95511 1.20245 1.14029 0.97936 0.93444 1.24436 0.94012 1.06595 0.91440 1.86486 1.35331 1.82959 1.32499 0.85559 0.77993 0.77395 0.79991 1.19249 1.18443 1.19846 1.20464 0.96605 0.95983 0.87054 1.44332 1.59860 1.25431 1.07526 1.21583 0.89295 1.02673 0.89371 1.27012 1.00706 1.07695 1.17152 0.90733 0.91560 0.91749 0.90216 0.90835 0.90142 0.91274 0.90178 0.92738 0.92713 0.84956 0.90830 0.87446 0.87786 0.92055 0.90694 0.89993 0.89954 0.76049 0.85582 0.76066 0.87665 0.88107 0.90816 0.87529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.24 8.65 113.37 0.98 3.22 16 2 Si 1.06 -8.05 10.05 68.60 0.69 -7.36 16 3 C -0.47 3.57 7.38 113.37 0.84 4.40 16 4 C -0.43 1.18 5.09 72.35 0.37 1.55 16 5 C -0.12 -0.15 5.76 30.93 0.18 0.03 16 6 C 0.08 -0.03 5.32 86.54 0.46 0.43 16 7 N -0.59 0.73 2.18 -829.84 -1.81 -1.07 16 8 C 0.50 2.11 6.17 87.66 0.54 2.66 16 9 O -0.57 -7.00 15.49 -3.04 -0.05 -7.05 16 10 C 0.13 0.18 2.42 44.32 0.11 0.29 16 11 C -0.13 0.09 5.13 30.79 0.16 0.25 16 12 C -0.05 0.00 5.85 29.70 0.17 0.18 16 13 C -0.25 -0.76 5.40 -16.76 -0.09 -0.85 16 14 C -0.05 -0.01 2.80 71.23 0.20 0.19 16 15 O -0.56 -0.43 12.86 -148.98 -1.92 -2.34 16 16 Si 0.96 0.84 25.20 68.60 1.73 2.57 16 17 H -0.27 -0.89 7.11 99.48 0.71 -0.19 16 18 H -0.26 -0.19 7.11 99.48 0.71 0.52 16 19 H -0.27 -1.11 6.87 99.48 0.68 -0.43 16 20 C 0.12 0.53 9.61 83.41 0.80 1.33 16 21 N -0.74 -3.43 5.46 -328.99 -1.80 -5.22 16 22 C 0.09 -0.63 5.22 87.90 0.46 -0.18 16 23 C -0.44 3.27 4.96 72.75 0.36 3.63 16 24 H 0.07 -0.41 7.96 -2.38 -0.02 -0.43 16 25 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 26 H 0.06 -0.24 7.96 -2.39 -0.02 -0.26 16 27 H 0.08 -0.64 4.91 -2.38 -0.01 -0.66 16 28 H 0.07 -0.51 7.96 -2.39 -0.02 -0.53 16 29 H 0.08 -0.66 7.96 -2.39 -0.02 -0.67 16 30 H 0.07 -0.12 7.97 -2.39 -0.02 -0.14 16 31 H 0.08 -0.28 7.97 -2.39 -0.02 -0.29 16 32 H 0.05 0.22 7.39 -2.38 -0.02 0.20 16 33 H 0.05 0.20 8.14 -2.39 -0.02 0.18 16 34 H 0.13 -0.70 2.85 -2.38 -0.01 -0.71 16 35 H 0.07 0.26 7.42 -2.39 -0.02 0.25 16 36 H 0.11 -0.16 6.59 -2.38 -0.02 -0.18 16 37 H 0.10 -0.60 6.98 -2.38 -0.02 -0.62 16 38 H 0.06 0.19 8.14 -2.38 -0.02 0.17 16 39 H 0.07 -0.05 8.14 -2.38 -0.02 -0.07 16 40 H 0.08 -0.12 8.14 -2.39 -0.02 -0.14 16 41 H 0.08 -0.25 7.96 -2.39 -0.02 -0.27 16 42 H 0.39 -2.97 8.74 -74.06 -0.65 -3.62 16 43 H 0.13 0.41 4.33 -2.91 -0.01 0.40 16 44 H 0.40 2.22 8.18 -92.71 -0.76 1.46 16 45 H 0.11 -0.88 4.15 -2.38 -0.01 -0.89 16 46 H 0.10 -1.06 6.55 -2.39 -0.02 -1.08 16 47 H 0.07 -0.37 7.96 -2.38 -0.02 -0.39 16 48 H 0.11 -1.08 7.96 -2.39 -0.02 -1.10 16 Total: 0.00 -15.80 352.39 2.69 -13.11 By element: Atomic # 1 Polarization: -10.06 SS G_CDS: 0.30 Total: -9.76 kcal Atomic # 6 Polarization: 11.59 SS G_CDS: 5.54 Total: 17.12 kcal Atomic # 7 Polarization: -2.69 SS G_CDS: -3.60 Total: -6.30 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: -1.96 Total: -9.39 kcal Atomic # 14 Polarization: -7.21 SS G_CDS: 2.42 Total: -4.79 kcal Total: -15.80 2.69 -13.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915400_15413834.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.254 kcal (2) G-P(sol) polarization free energy of solvation -15.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds