Wall clock time and date at job start Thu Mar 4 2021 18:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86292 * 109.60985 * 2 1 4 4 C 1.88875 * 109.60799 * 120.33344 * 2 1 3 5 5 C 1.46945 * 108.02560 * 55.37870 * 4 2 1 6 6 C 1.52539 * 114.65802 * 62.65820 * 5 4 2 7 7 N 1.45039 * 107.75442 * 268.14484 * 6 5 4 8 8 C 1.34774 * 120.98579 * 285.04791 * 7 6 5 9 9 O 1.21632 * 120.00482 * 174.73926 * 8 7 6 10 10 C 1.47270 * 120.00001 * 354.73443 * 8 7 6 11 11 C 1.36335 * 126.96576 * 135.44456 * 10 8 7 12 12 C 1.50997 * 126.79321 * 0.63513 * 11 10 8 13 13 C 1.53399 * 108.30174 * 163.95020 * 12 11 10 14 14 C 1.53161 * 109.04119 * 48.28295 * 13 12 11 15 15 C 1.53124 * 109.53005 * 290.43076 * 14 13 12 16 16 N 1.35215 * 108.65908 * 179.97438 * 11 10 8 17 17 C 1.36429 * 109.89764 * 0.35356 * 16 11 10 18 18 C 1.50700 * 125.49362 * 179.82085 * 17 16 11 19 19 O 1.42897 * 109.47170 * 29.98511 * 18 17 16 20 20 Si 1.86302 * 109.47051 * 149.98602 * 18 17 16 21 21 H 1.48499 * 109.46770 * 180.02562 * 20 18 17 22 22 H 1.48498 * 109.46929 * 299.99901 * 20 18 17 23 23 H 1.48493 * 109.47328 * 59.99645 * 20 18 17 24 24 C 1.34494 * 109.01103 * 359.78927 * 17 16 11 25 25 C 1.47146 * 118.16567 * 105.02107 * 7 6 5 26 26 C 1.53991 * 113.91680 * 320.05667 * 25 7 6 27 27 H 1.09005 * 109.46559 * 299.66527 * 1 2 3 28 28 H 1.08994 * 109.47178 * 59.66694 * 1 2 3 29 29 H 1.08997 * 109.47122 * 179.66779 * 1 2 3 30 30 H 1.08997 * 109.47625 * 180.33737 * 3 2 1 31 31 H 1.09001 * 109.47214 * 300.33543 * 3 2 1 32 32 H 1.09002 * 109.47248 * 60.32674 * 3 2 1 33 33 H 1.09002 * 109.75016 * 295.75226 * 4 2 1 34 34 H 1.09000 * 109.79709 * 175.03658 * 4 2 1 35 35 H 1.08999 * 108.42564 * 183.94570 * 5 4 2 36 36 H 1.09002 * 108.42077 * 301.37494 * 5 4 2 37 37 H 1.08998 * 109.78295 * 27.86767 * 6 5 4 38 38 H 1.09002 * 109.77820 * 148.68339 * 6 5 4 39 39 H 1.08998 * 109.84819 * 44.14671 * 12 11 10 40 40 H 1.09005 * 109.55107 * 283.57468 * 12 11 10 41 41 H 1.08997 * 109.54146 * 288.41507 * 13 12 11 42 42 H 1.09000 * 109.54180 * 168.15401 * 13 12 11 43 43 H 1.09006 * 109.46171 * 170.40634 * 14 13 12 44 44 H 1.09002 * 109.45947 * 50.44946 * 14 13 12 45 45 H 1.09010 * 109.56093 * 291.14316 * 15 14 13 46 46 H 1.09005 * 109.65455 * 170.86576 * 15 14 13 47 47 H 1.09004 * 109.47233 * 269.98308 * 18 17 16 48 48 H 0.96703 * 114.00121 * 180.02562 * 19 18 17 49 49 H 1.08004 * 126.81358 * 179.97438 * 24 17 16 50 50 H 1.08994 * 108.59678 * 198.90841 * 25 7 6 51 51 H 1.08999 * 108.59327 * 81.19835 * 25 7 6 52 52 H 1.08992 * 108.89233 * 196.65704 * 26 25 7 53 53 H 1.09000 * 108.88681 * 78.17719 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4882 1.7549 0.0000 4 6 2.4968 -0.8986 1.5357 5 6 1.9016 -2.2419 1.5546 6 6 2.2897 -3.1267 0.3742 7 7 1.2911 -2.9451 -0.6619 8 6 0.0682 -3.5006 -0.5519 9 8 -0.7866 -3.2592 -1.3828 10 6 -0.2333 -4.4003 0.5745 11 6 -1.3569 -4.3991 1.3466 12 6 -2.5483 -3.4817 1.2084 13 6 -3.7159 -4.0862 1.9986 14 6 -3.2230 -4.4832 3.3933 15 6 -2.2743 -5.6797 3.2796 16 7 -1.2473 -5.3794 2.2715 17 6 -0.0551 -6.0261 2.1235 18 6 0.4288 -7.1739 2.9717 19 8 -0.6923 -7.9265 3.4392 20 14 1.5351 -8.2746 1.9543 21 1 2.0115 -9.4059 2.7900 22 1 0.7750 -8.8032 0.7933 23 1 2.7001 -7.4925 1.4684 24 6 0.6182 -5.4746 1.0982 25 6 1.6494 -2.1363 -1.8378 26 6 2.4851 -0.8864 -1.5047 27 1 -0.3632 0.5087 0.8930 28 1 -0.3633 0.5190 -0.8869 29 1 -0.3633 -1.0276 -0.0060 30 1 3.5782 1.7523 -0.0061 31 1 2.1212 2.2713 -0.8870 32 1 2.1309 2.2679 0.8929 33 1 2.2005 -0.3518 2.4309 34 1 3.5832 -0.9776 1.4951 35 1 2.2069 -2.7411 2.4741 36 1 0.8166 -2.1378 1.5647 37 1 3.2708 -2.8336 0.0004 38 1 2.3100 -4.1707 0.6867 39 1 -2.8242 -3.3892 0.1580 40 1 -2.3011 -2.4996 1.6114 41 1 -4.0897 -4.9685 1.4791 42 1 -4.5143 -3.3498 2.0899 43 1 -4.0755 -4.7534 4.0165 44 1 -2.6953 -3.6430 3.8447 45 1 -2.8362 -6.5635 2.9771 46 1 -1.7974 -5.8624 4.2426 47 1 0.9868 -6.7859 3.8240 48 1 -0.4550 -8.6826 3.9934 49 1 1.5923 -5.7647 0.7330 50 1 0.7323 -1.8190 -2.3340 51 1 2.2169 -2.7598 -2.5286 52 1 2.4538 -0.2043 -2.3542 53 1 3.5186 -1.1881 -1.3346 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915400_16915396.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 18:28:20 Heat of formation + Delta-G solvation = -54.208366 kcal Electronic energy + Delta-G solvation = -31743.124614 eV Core-core repulsion = 27931.873661 eV Total energy + Delta-G solvation = -3811.250953 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 350.194 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.79372 -40.72993 -37.91123 -37.64246 -36.83164 -34.18354 -33.53104 -31.72885 -31.19916 -29.36410 -29.02119 -28.38645 -27.17121 -26.58310 -24.59174 -24.50154 -22.73893 -22.13811 -21.61702 -20.30879 -19.00940 -18.42931 -18.06989 -17.36215 -16.91777 -16.54896 -16.39967 -16.00412 -15.68676 -15.20430 -15.16674 -14.96515 -14.93798 -14.84840 -14.59343 -14.47581 -14.27831 -13.91352 -13.86975 -13.82507 -13.70128 -13.42311 -13.22751 -13.19584 -13.09914 -12.85651 -12.73835 -12.50635 -12.18994 -12.15410 -12.10957 -12.01005 -11.95608 -11.78328 -11.75770 -11.70874 -10.95634 -10.77067 -10.56366 -10.53148 -10.16440 -9.70717 -9.37839 -8.97184 0.84370 0.98327 1.40670 1.48067 1.55814 1.78379 1.87450 1.89784 2.01597 2.02047 2.14298 2.34650 2.70691 3.25994 3.56347 3.61863 3.75976 3.80044 3.83390 3.94667 4.03663 4.22941 4.24088 4.36762 4.38804 4.40154 4.44118 4.48171 4.56300 4.62210 4.71032 4.72786 4.76218 4.77887 4.79742 4.81740 4.83832 4.85326 4.88003 4.93710 4.98313 5.02442 5.05949 5.11106 5.19287 5.21130 5.27693 5.43688 5.53637 5.56460 5.62442 5.72533 5.77890 6.11063 6.28050 6.51757 6.77372 7.25150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.464 4.464 2 Si 1.042 2.958 3 C -0.453 4.453 4 C -0.395 4.395 5 C -0.121 4.121 6 C 0.091 3.909 7 N -0.601 5.601 8 C 0.597 3.403 9 O -0.586 6.586 10 C -0.240 4.240 11 C 0.089 3.911 12 C -0.060 4.060 13 C -0.122 4.122 14 C -0.133 4.133 15 C 0.113 3.887 16 N -0.423 5.423 17 C 0.033 3.967 18 C -0.049 4.049 19 O -0.563 6.563 20 Si 0.989 3.011 21 H -0.244 1.244 22 H -0.291 1.291 23 H -0.248 1.248 24 C -0.188 4.188 25 C 0.120 3.880 26 C -0.426 4.426 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.069 0.931 36 H 0.045 0.955 37 H 0.108 0.892 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.062 0.938 42 H 0.090 0.910 43 H 0.108 0.892 44 H 0.073 0.927 45 H 0.084 0.916 46 H 0.106 0.894 47 H 0.107 0.893 48 H 0.404 0.596 49 H 0.160 0.840 50 H 0.061 0.939 51 H 0.063 0.937 52 H 0.096 0.904 53 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.116 -1.021 7.516 8.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.234 2.766 3 C -0.561 4.561 4 C -0.481 4.481 5 C -0.159 4.159 6 C -0.031 4.031 7 N -0.333 5.333 8 C 0.388 3.612 9 O -0.468 6.468 10 C -0.249 4.249 11 C -0.028 4.028 12 C -0.098 4.098 13 C -0.160 4.160 14 C -0.171 4.171 15 C -0.007 4.007 16 N -0.098 5.098 17 C -0.077 4.077 18 C -0.159 4.159 19 O -0.373 6.373 20 Si 0.812 3.188 21 H -0.167 1.167 22 H -0.216 1.216 23 H -0.172 1.172 24 C -0.212 4.212 25 C -0.002 4.002 26 C -0.511 4.511 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.111 0.889 35 H 0.087 0.913 36 H 0.064 0.936 37 H 0.126 0.874 38 H 0.108 0.892 39 H 0.093 0.907 40 H 0.101 0.899 41 H 0.081 0.919 42 H 0.109 0.891 43 H 0.127 0.873 44 H 0.092 0.908 45 H 0.103 0.897 46 H 0.124 0.876 47 H 0.125 0.875 48 H 0.255 0.745 49 H 0.178 0.822 50 H 0.080 0.920 51 H 0.081 0.919 52 H 0.115 0.885 53 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.639 -1.124 6.527 7.556 hybrid contribution -0.379 -0.130 -0.016 0.401 sum 3.260 -1.254 6.510 7.388 Atomic orbital electron populations 1.26487 1.23845 1.03174 1.03381 0.78858 0.64652 0.66261 0.66843 1.26153 1.06831 1.18789 1.04334 1.25092 1.05962 1.02488 1.14552 1.20331 1.00549 0.96280 0.98779 1.21787 0.92264 1.01600 0.87488 1.47763 1.12873 1.50263 1.22378 1.17546 0.81205 0.78624 0.83801 1.90734 1.47781 1.63884 1.44375 1.19774 0.98042 1.04499 1.02630 1.20337 0.96652 0.93625 0.92208 1.20466 0.90910 0.96579 1.01848 1.21655 0.97248 1.01638 0.95440 1.21940 0.99945 0.97494 0.97675 1.22189 0.88387 0.98903 0.91236 1.43936 1.15331 1.24797 1.25744 1.19992 0.88067 0.98767 1.00870 1.24376 0.95108 0.93997 1.02424 1.86406 1.31814 1.46419 1.72611 0.85180 0.77095 0.78228 0.78301 1.16672 1.21621 1.17164 1.21758 1.00991 1.00117 0.98317 1.21183 0.99698 0.92589 0.86768 1.26570 1.05342 1.02200 1.16981 0.91805 0.92431 0.93025 0.90294 0.91565 0.91264 0.90297 0.88938 0.91286 0.93610 0.87366 0.89216 0.90658 0.89861 0.91907 0.89128 0.87339 0.90810 0.89736 0.87631 0.87517 0.74483 0.82237 0.92006 0.91896 0.88535 0.88398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 -2.17 8.41 113.37 0.95 -1.22 16 2 Si 1.04 -2.50 10.48 68.60 0.72 -1.78 16 3 C -0.45 1.00 8.65 113.37 0.98 1.98 16 4 C -0.39 1.32 4.77 70.10 0.33 1.65 16 5 C -0.12 0.06 4.71 28.56 0.13 0.20 16 6 C 0.09 -0.03 5.07 86.50 0.44 0.41 16 7 N -0.60 -3.35 1.85 -826.82 -1.53 -4.88 16 8 C 0.60 7.32 5.56 86.62 0.48 7.80 16 9 O -0.59 -11.62 15.71 -4.13 -0.06 -11.69 16 10 C -0.24 -2.33 4.67 -19.12 -0.09 -2.42 16 11 C 0.09 0.73 6.57 41.69 0.27 1.00 16 12 C -0.06 -0.37 5.92 30.08 0.18 -0.20 16 13 C -0.12 -0.07 5.98 30.78 0.18 0.12 16 14 C -0.13 0.40 5.92 30.69 0.18 0.58 16 15 C 0.11 -0.10 5.32 86.32 0.46 0.36 16 16 N -0.42 -1.91 3.11 -493.62 -1.54 -3.45 16 17 C 0.03 0.11 6.18 40.99 0.25 0.37 16 18 C -0.05 0.17 2.98 71.24 0.21 0.38 16 19 O -0.56 2.52 10.65 -148.98 -1.59 0.94 16 20 Si 0.99 -2.39 26.55 68.60 1.82 -0.57 16 21 H -0.24 1.02 7.11 99.48 0.71 1.72 16 22 H -0.29 -1.45 7.11 99.48 0.71 -0.74 16 23 H -0.25 0.59 6.80 99.48 0.68 1.27 16 24 C -0.19 -1.00 7.80 23.64 0.18 -0.82 16 25 C 0.12 0.49 5.75 86.59 0.50 0.99 16 26 C -0.43 0.89 4.36 72.32 0.32 1.21 16 27 H 0.06 0.24 7.96 -2.38 -0.02 0.22 16 28 H 0.06 0.34 7.96 -2.39 -0.02 0.32 16 29 H 0.05 0.48 5.73 -2.39 -0.01 0.47 16 30 H 0.08 -0.30 7.96 -2.39 -0.02 -0.32 16 31 H 0.07 -0.09 7.96 -2.39 -0.02 -0.11 16 32 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 33 H 0.08 -0.26 8.00 -2.39 -0.02 -0.28 16 34 H 0.09 -0.58 8.00 -2.39 -0.02 -0.60 16 35 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 36 H 0.05 0.18 5.88 -2.39 -0.01 0.17 16 37 H 0.11 -0.53 6.71 -2.39 -0.02 -0.54 16 38 H 0.09 -0.07 4.62 -2.39 -0.01 -0.09 16 39 H 0.07 0.82 7.51 -2.39 -0.02 0.80 16 40 H 0.08 0.43 8.14 -2.38 -0.02 0.41 16 41 H 0.06 0.14 8.12 -2.39 -0.02 0.12 16 42 H 0.09 -0.18 8.14 -2.39 -0.02 -0.20 16 43 H 0.11 -0.75 8.14 -2.38 -0.02 -0.77 16 44 H 0.07 -0.19 8.11 -2.39 -0.02 -0.21 16 45 H 0.08 -0.01 8.00 -2.38 -0.02 -0.03 16 46 H 0.11 -0.38 7.68 -2.38 -0.02 -0.39 16 47 H 0.11 -0.93 7.96 -2.38 -0.02 -0.95 16 48 H 0.40 -5.46 8.74 -74.06 -0.65 -6.11 16 49 H 0.16 0.27 5.43 -2.91 -0.02 0.26 16 50 H 0.06 0.56 7.10 -2.39 -0.02 0.54 16 51 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 52 H 0.10 -0.31 7.93 -2.39 -0.02 -0.33 16 53 H 0.10 -0.56 7.30 -2.39 -0.02 -0.58 16 Total: 0.00 -19.86 391.34 4.78 -15.08 By element: Atomic # 1 Polarization: -7.03 SS G_CDS: 0.98 Total: -6.05 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: 5.97 Total: 12.40 kcal Atomic # 7 Polarization: -5.26 SS G_CDS: -3.06 Total: -8.33 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: -1.65 Total: -10.75 kcal Atomic # 14 Polarization: -4.89 SS G_CDS: 2.54 Total: -2.35 kcal Total: -19.86 4.78 -15.08 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915400_16915396.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.130 kcal (2) G-P(sol) polarization free energy of solvation -19.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds