Wall clock time and date at job start Thu Mar 4 2021 18:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86294 * 1 3 3 C 1.86303 * 109.44015 * 2 1 4 4 C 1.88799 * 109.44147 * 119.92423 * 2 1 3 5 5 C 1.49874 * 108.19207 * 50.78233 * 4 2 1 6 6 C 1.54333 * 114.58760 * 84.45359 * 5 4 2 7 7 N 1.47121 * 117.93537 * 314.26075 * 6 5 4 8 8 C 1.34772 * 118.22834 * 134.72079 * 7 6 5 9 9 O 1.21284 * 119.99979 * 179.97438 * 8 7 6 10 10 C 1.50705 * 120.00258 * 359.97438 * 8 7 6 11 11 O 1.42900 * 109.47097 * 179.97438 * 10 8 7 12 12 C 1.35900 * 116.99839 * 179.97438 * 11 10 8 13 13 C 1.38712 * 120.05497 * 359.97438 * 12 11 10 14 14 C 1.38169 * 119.94150 * 180.02562 * 13 12 11 15 15 C 1.38245 * 120.05794 * 359.97438 * 14 13 12 16 16 C 1.38290 * 120.11036 * 0.02562 * 15 14 13 17 17 C 1.38129 * 120.05388 * 359.68407 * 16 15 14 18 18 C 1.50698 * 120.02395 * 180.32338 * 17 16 15 19 19 O 1.42901 * 109.47362 * 105.26925 * 18 17 16 20 20 Si 1.86296 * 109.47450 * 345.26632 * 18 17 16 21 21 H 1.48503 * 109.47024 * 60.00539 * 20 18 17 22 22 H 1.48499 * 109.47241 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47381 * 300.00650 * 20 18 17 24 24 C 1.42774 * 123.53698 * 314.70878 * 7 6 5 25 25 C 1.54950 * 107.21088 * 96.96223 * 24 7 6 26 26 H 1.08996 * 109.47250 * 300.07869 * 1 2 3 27 27 H 1.09005 * 109.46871 * 60.07779 * 1 2 3 28 28 H 1.08999 * 109.47512 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46999 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47108 * 299.92458 * 3 2 1 31 31 H 1.08996 * 109.47097 * 59.92409 * 3 2 1 32 32 H 1.09002 * 109.72754 * 170.47128 * 4 2 1 33 33 H 1.08998 * 109.72375 * 291.09767 * 4 2 1 34 34 H 1.09008 * 108.45437 * 205.85374 * 5 4 2 35 35 H 1.09000 * 108.45658 * 323.19464 * 5 4 2 36 36 H 1.09001 * 107.76556 * 192.10691 * 6 5 4 37 37 H 1.08998 * 107.69398 * 76.36579 * 6 5 4 38 38 H 1.09006 * 109.46383 * 299.99380 * 10 8 7 39 39 H 1.08998 * 109.47285 * 59.99692 * 10 8 7 40 40 H 1.07998 * 120.03092 * 0.02562 * 13 12 11 41 41 H 1.07997 * 119.97053 * 179.97438 * 14 13 12 42 42 H 1.07997 * 119.94530 * 180.02562 * 15 14 13 43 43 H 1.07997 * 119.97338 * 179.97438 * 16 15 14 44 44 H 1.09002 * 109.46608 * 225.26819 * 18 17 16 45 45 H 0.96695 * 114.00018 * 179.97438 * 19 18 17 46 46 H 1.08997 * 109.90809 * 337.53291 * 24 7 6 47 47 H 1.09004 * 109.97040 * 216.42889 * 24 7 6 48 48 H 1.09001 * 109.04513 * 163.35044 * 25 24 7 49 49 H 1.09000 * 109.04663 * 44.46738 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4830 1.7568 0.0000 4 6 2.4913 -0.8881 1.5430 5 6 1.7982 -2.2138 1.6348 6 6 2.4535 -3.3398 0.8074 7 7 2.8527 -3.0359 -0.5756 8 6 4.0678 -3.4434 -0.9925 9 8 4.4294 -3.2104 -2.1265 10 6 4.9772 -4.1886 -0.0498 11 8 6.1976 -4.5104 -0.7199 12 6 7.1341 -5.1875 -0.0049 13 6 6.8838 -5.5345 1.3146 14 6 7.8379 -6.2225 2.0396 15 6 9.0408 -6.5655 1.4509 16 6 9.2926 -6.2207 0.1356 17 6 8.3398 -5.5382 -0.5953 18 6 8.6121 -5.1692 -2.0308 19 8 7.8664 -6.0302 -2.8937 20 14 10.4311 -5.3578 -2.3862 21 1 10.8378 -6.7666 -2.1517 22 1 10.6995 -4.9935 -3.8006 23 1 11.2061 -4.4630 -1.4895 24 6 2.0222 -2.3328 -1.4999 25 6 2.4633 -0.8476 -1.4748 26 1 -0.3633 0.5150 0.8892 27 1 -0.3633 0.5127 -0.8907 28 1 -0.3634 -1.0276 0.0005 29 1 3.5730 1.7574 0.0005 30 1 2.1205 2.2700 -0.8906 31 1 2.1183 2.2708 0.8893 32 1 3.5680 -1.0404 1.4671 33 1 2.2655 -0.2929 2.4277 34 1 1.7766 -2.5202 2.6807 35 1 0.7702 -2.0900 1.2943 36 1 1.7571 -4.1777 0.7758 37 1 3.3421 -3.6714 1.3446 38 1 5.1922 -3.5639 0.8173 39 1 4.4889 -5.1070 0.2761 40 1 5.9441 -5.2672 1.7749 41 1 7.6437 -6.4925 3.0671 42 1 9.7850 -7.1036 2.0192 43 1 10.2333 -6.4894 -0.3220 44 1 8.3136 -4.1351 -2.2029 45 1 7.9931 -5.8493 -3.8351 46 1 0.9782 -2.4150 -1.1977 47 1 2.1514 -2.7416 -2.5021 48 1 2.0706 -0.3449 -2.3586 49 1 3.5521 -0.7996 -1.4942 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915400_2989392.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 18:28:37 Heat of formation + Delta-G solvation = -101.478238 kcal Electronic energy + Delta-G solvation = -28067.870420 eV Core-core repulsion = 24312.388649 eV Total energy + Delta-G solvation = -3755.481771 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.167 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.78662 -40.91443 -38.60876 -37.56135 -37.44797 -34.06874 -32.97143 -32.36409 -31.07808 -29.38140 -28.69604 -28.36152 -27.11192 -26.64690 -24.54386 -23.18813 -22.53692 -22.24129 -19.92614 -19.42554 -18.52265 -18.16681 -17.60200 -17.47157 -16.93937 -16.71281 -16.16996 -15.85350 -15.47160 -15.31803 -15.06977 -15.04938 -14.81263 -14.41622 -14.33311 -14.16428 -13.94800 -13.86106 -13.58188 -13.43372 -13.41293 -13.16306 -13.09895 -12.99370 -12.92378 -12.66498 -12.57865 -12.22569 -12.15672 -12.08757 -11.77563 -11.75408 -11.74039 -10.87186 -10.76001 -10.59071 -10.28132 -10.17445 -9.97584 -9.71571 -9.22709 0.21165 0.39879 1.12120 1.38983 1.42179 1.46599 1.49892 1.84010 1.90038 1.95598 2.03252 2.45207 2.66045 2.75363 3.28251 3.50993 3.74830 3.83162 3.89319 3.93944 3.99195 4.11845 4.14499 4.22284 4.27759 4.32220 4.35052 4.42223 4.50818 4.56262 4.63921 4.71398 4.75499 4.77503 4.87577 4.90179 4.94357 4.95931 5.01316 5.03359 5.27106 5.33608 5.36184 5.37285 5.49998 5.51847 5.54504 5.63691 5.73215 5.77384 6.14642 6.35029 6.76412 7.03786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.454 4.454 2 Si 1.074 2.926 3 C -0.471 4.471 4 C -0.403 4.403 5 C -0.120 4.120 6 C 0.086 3.914 7 N -0.588 5.588 8 C 0.505 3.495 9 O -0.566 6.566 10 C 0.035 3.965 11 O -0.311 6.311 12 C 0.130 3.870 13 C -0.211 4.211 14 C -0.073 4.073 15 C -0.156 4.156 16 C -0.099 4.099 17 C -0.135 4.135 18 C -0.084 4.084 19 O -0.562 6.562 20 Si 0.990 3.010 21 H -0.254 1.254 22 H -0.259 1.259 23 H -0.253 1.253 24 C 0.128 3.872 25 C -0.467 4.467 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.122 0.878 39 H 0.118 0.882 40 H 0.158 0.842 41 H 0.159 0.841 42 H 0.151 0.849 43 H 0.136 0.864 44 H 0.063 0.937 45 H 0.391 0.609 46 H 0.111 0.889 47 H 0.055 0.945 48 H 0.079 0.921 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.383 0.044 7.880 8.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.562 4.562 2 Si 1.264 2.736 3 C -0.576 4.576 4 C -0.489 4.489 5 C -0.158 4.158 6 C -0.035 4.035 7 N -0.321 5.321 8 C 0.292 3.708 9 O -0.444 6.444 10 C -0.043 4.043 11 O -0.224 6.224 12 C 0.084 3.916 13 C -0.229 4.229 14 C -0.091 4.091 15 C -0.174 4.174 16 C -0.117 4.117 17 C -0.135 4.135 18 C -0.193 4.193 19 O -0.370 6.370 20 Si 0.812 3.188 21 H -0.178 1.178 22 H -0.184 1.184 23 H -0.177 1.177 24 C 0.004 3.996 25 C -0.550 4.550 26 H 0.093 0.907 27 H 0.084 0.916 28 H 0.097 0.903 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.116 0.884 35 H 0.093 0.907 36 H 0.107 0.893 37 H 0.112 0.888 38 H 0.139 0.861 39 H 0.136 0.864 40 H 0.176 0.824 41 H 0.176 0.824 42 H 0.169 0.831 43 H 0.153 0.847 44 H 0.081 0.919 45 H 0.240 0.760 46 H 0.129 0.871 47 H 0.073 0.927 48 H 0.098 0.902 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.528 -0.109 7.441 7.860 hybrid contribution -0.224 0.573 -1.036 1.205 sum -2.753 0.463 6.405 6.987 Atomic orbital electron populations 1.26251 1.20388 1.04946 1.04584 0.77962 0.66467 0.64292 0.64868 1.26394 1.05776 1.21140 1.04325 1.25624 1.04648 1.03456 1.15194 1.21069 1.00207 0.93494 1.00985 1.22289 1.02807 0.99157 0.79274 1.47147 1.15027 1.56183 1.13707 1.20564 0.82802 0.79556 0.87848 1.90741 1.74381 1.57303 1.21977 1.22847 0.84262 1.01981 0.95209 1.86166 1.25291 1.70685 1.40218 1.19032 0.88578 0.92823 0.91134 1.21610 1.03160 1.05289 0.92854 1.21407 0.92229 0.94610 1.00880 1.21390 0.98993 1.02354 0.94624 1.21156 0.98567 0.96326 0.95611 1.18929 0.94219 1.05008 0.95377 1.24832 1.09331 0.95805 0.89288 1.86459 1.71205 1.58470 1.20857 0.85177 0.72653 0.80595 0.80368 1.17796 1.18371 1.17690 1.20758 0.95278 0.90367 0.93153 1.27058 1.05852 1.03038 1.19017 0.90718 0.91638 0.90275 0.92303 0.91949 0.90752 0.91324 0.89205 0.88396 0.90652 0.89330 0.88829 0.86065 0.86408 0.82432 0.82357 0.83136 0.84651 0.91867 0.76022 0.87061 0.92660 0.90211 0.92691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 2.78 8.35 113.37 0.95 3.72 16 2 Si 1.07 -6.06 10.48 68.60 0.72 -5.34 16 3 C -0.47 0.67 8.65 113.37 0.98 1.65 16 4 C -0.40 3.05 4.83 70.98 0.34 3.39 16 5 C -0.12 1.23 5.32 30.04 0.16 1.39 16 6 C 0.09 -0.74 5.83 86.71 0.51 -0.24 16 7 N -0.59 0.32 2.45 -822.72 -2.01 -1.70 16 8 C 0.50 3.33 7.27 87.66 0.64 3.97 16 9 O -0.57 -9.97 15.71 15.99 0.25 -9.72 16 10 C 0.03 0.04 3.50 71.24 0.25 0.29 16 11 O -0.31 -3.15 9.00 -73.39 -0.66 -3.81 16 12 C 0.13 0.98 6.66 22.51 0.15 1.13 16 13 C -0.21 -0.13 9.04 22.37 0.20 0.07 16 14 C -0.07 0.09 10.04 22.26 0.22 0.31 16 15 C -0.16 -0.12 10.04 22.28 0.22 0.10 16 16 C -0.10 -0.48 8.66 22.26 0.19 -0.29 16 17 C -0.13 -1.16 5.31 -19.77 -0.10 -1.27 16 18 C -0.08 -0.66 2.37 71.24 0.17 -0.49 16 19 O -0.56 -5.45 12.86 -148.98 -1.92 -7.36 16 20 Si 0.99 3.26 25.48 68.60 1.75 5.01 16 21 H -0.25 -0.98 6.74 99.48 0.67 -0.31 16 22 H -0.26 -0.88 7.11 99.48 0.71 -0.17 16 23 H -0.25 -0.91 7.11 99.48 0.71 -0.20 16 24 C 0.13 0.08 5.36 87.73 0.47 0.55 16 25 C -0.47 -0.34 4.47 72.65 0.32 -0.01 16 26 H 0.07 -0.48 7.96 -2.39 -0.02 -0.50 16 27 H 0.06 -0.30 7.96 -2.38 -0.02 -0.32 16 28 H 0.08 -0.62 6.53 -2.39 -0.02 -0.64 16 29 H 0.06 0.02 7.96 -2.39 -0.02 0.00 16 30 H 0.06 -0.02 7.96 -2.39 -0.02 -0.04 16 31 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 32 H 0.07 -0.40 7.90 -2.39 -0.02 -0.42 16 33 H 0.09 -0.80 7.99 -2.39 -0.02 -0.82 16 34 H 0.10 -1.26 8.14 -2.38 -0.02 -1.28 16 35 H 0.07 -0.87 5.94 -2.39 -0.01 -0.88 16 36 H 0.09 -1.01 8.14 -2.39 -0.02 -1.03 16 37 H 0.09 -1.12 5.49 -2.39 -0.01 -1.14 16 38 H 0.12 -0.65 6.96 -2.38 -0.02 -0.67 16 39 H 0.12 -0.54 7.45 -2.39 -0.02 -0.56 16 40 H 0.16 -1.01 6.30 -2.91 -0.02 -1.03 16 41 H 0.16 -1.19 8.06 -2.91 -0.02 -1.22 16 42 H 0.15 -0.65 8.06 -2.91 -0.02 -0.67 16 43 H 0.14 0.31 4.89 -2.91 -0.01 0.30 16 44 H 0.06 0.57 7.83 -2.39 -0.02 0.55 16 45 H 0.39 0.53 8.74 -74.06 -0.65 -0.12 16 46 H 0.11 -0.63 7.14 -2.39 -0.02 -0.65 16 47 H 0.05 0.35 7.46 -2.39 -0.02 0.34 16 48 H 0.08 0.08 7.89 -2.39 -0.02 0.06 16 49 H 0.05 0.35 7.28 -2.39 -0.02 0.33 16 Total: 0.00 -24.75 380.66 4.82 -19.93 By element: Atomic # 1 Polarization: -12.32 SS G_CDS: 1.02 Total: -11.30 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: 5.67 Total: 14.30 kcal Atomic # 7 Polarization: 0.32 SS G_CDS: -2.01 Total: -1.70 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -2.32 Total: -20.89 kcal Atomic # 14 Polarization: -2.80 SS G_CDS: 2.47 Total: -0.34 kcal Total: -24.75 4.82 -19.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915400_2989392.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.547 kcal (2) G-P(sol) polarization free energy of solvation -24.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds