Wall clock time and date at job start Thu Mar 4 2021 18:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86305 * 1 3 3 C 1.86299 * 109.76826 * 2 1 4 4 C 1.84432 * 109.77201 * 239.20221 * 2 1 3 5 5 C 1.55423 * 115.24452 * 324.56428 * 4 2 1 6 6 C 1.55115 * 111.37135 * 318.81871 * 5 4 2 7 7 N 1.44300 * 109.16042 * 322.22447 * 6 5 4 8 8 C 1.34775 * 123.20083 * 291.09526 * 7 6 5 9 9 O 1.21283 * 119.99835 * 180.10750 * 8 7 6 10 10 C 1.50703 * 120.00196 * 0.11066 * 8 7 6 11 11 C 1.52997 * 109.47176 * 180.02562 * 10 8 7 12 12 O 1.42897 * 109.46991 * 180.02562 * 11 10 8 13 13 C 1.35903 * 117.00106 * 179.97438 * 12 11 10 14 14 C 1.38714 * 120.05431 * 359.72065 * 13 12 11 15 15 C 1.38167 * 119.94298 * 179.71935 * 14 13 12 16 16 C 1.38245 * 120.05454 * 0.58098 * 15 14 13 17 17 C 1.38288 * 120.10948 * 359.67452 * 16 15 14 18 18 C 1.50705 * 119.96942 * 180.02562 * 17 16 15 19 19 O 1.42894 * 109.47423 * 245.02069 * 18 17 16 20 20 Si 1.86302 * 109.47179 * 5.02710 * 18 17 16 21 21 H 1.48504 * 109.47241 * 59.99608 * 20 18 17 22 22 H 1.48497 * 109.47210 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46859 * 299.99554 * 20 18 17 24 24 C 1.38119 * 120.05693 * 0.04679 * 17 16 15 25 25 C 1.46960 * 113.70740 * 111.19524 * 7 6 5 26 26 C 1.45880 * 113.51698 * 260.26751 * 25 7 6 27 27 H 1.09001 * 109.46866 * 306.27754 * 1 2 3 28 28 H 1.08992 * 109.47214 * 66.28173 * 1 2 3 29 29 H 1.09006 * 109.46946 * 186.28470 * 1 2 3 30 30 H 1.08997 * 109.47361 * 180.74638 * 3 2 1 31 31 H 1.09000 * 109.47286 * 300.75228 * 3 2 1 32 32 H 1.09004 * 109.47005 * 60.74776 * 3 2 1 33 33 H 1.08992 * 108.32985 * 86.06430 * 4 2 1 34 34 H 1.09005 * 108.32782 * 203.26131 * 4 2 1 35 35 H 1.09002 * 109.09772 * 79.30439 * 5 4 2 36 36 H 1.08997 * 109.10604 * 198.39495 * 5 4 2 37 37 H 1.09007 * 109.50186 * 82.15666 * 6 5 4 38 38 H 1.08994 * 109.50337 * 202.24101 * 6 5 4 39 39 H 1.08999 * 109.46834 * 300.00156 * 10 8 7 40 40 H 1.09005 * 109.46744 * 59.99992 * 10 8 7 41 41 H 1.09006 * 109.46756 * 299.99446 * 11 10 8 42 42 H 1.09001 * 109.47247 * 59.99779 * 11 10 8 43 43 H 1.08004 * 120.02866 * 0.02562 * 14 13 12 44 44 H 1.07999 * 119.97117 * 180.28005 * 15 14 13 45 45 H 1.07995 * 119.94344 * 179.69925 * 16 15 14 46 46 H 1.09000 * 109.46671 * 125.02185 * 18 17 16 47 47 H 0.96696 * 114.00493 * 179.97438 * 19 18 17 48 48 H 1.08003 * 120.02532 * 180.02562 * 24 17 16 49 49 H 1.09002 * 108.65320 * 139.26885 * 25 7 6 50 50 H 1.08994 * 108.65587 * 21.27111 * 25 7 6 51 51 H 1.09004 * 110.23040 * 177.33790 * 26 25 7 52 52 H 1.08999 * 110.23744 * 299.35325 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4931 1.7532 0.0000 4 6 2.4869 -0.8886 -1.4908 5 6 1.6333 -2.1065 -1.9421 6 6 1.1536 -2.9422 -0.7265 7 7 2.2031 -2.9843 0.2629 8 6 3.3613 -3.6495 0.0825 9 8 4.2038 -3.6478 0.9549 10 6 3.6094 -4.3954 -1.2033 11 6 4.9873 -5.0583 -1.1506 12 8 5.2228 -5.7650 -2.3700 13 6 6.4109 -6.4145 -2.4872 14 6 7.3333 -6.3676 -1.4523 15 6 8.5380 -7.0335 -1.5715 16 6 8.8294 -7.7361 -2.7258 17 6 7.9137 -7.7800 -3.7611 18 6 8.2344 -8.5475 -5.0179 19 8 8.3311 -7.6408 -6.1181 20 14 9.8557 -9.4398 -4.8039 21 1 9.7551 -10.3821 -3.6605 22 1 10.1720 -10.1955 -6.0425 23 1 10.9328 -8.4525 -4.5384 24 6 6.7056 -7.1208 -3.6445 25 6 1.8904 -2.2354 1.4882 26 6 2.5055 -0.9135 1.5354 27 1 -0.3633 0.6081 0.8285 28 1 -0.3633 0.4133 -0.9408 29 1 -0.3633 -1.0216 0.1125 30 1 3.5830 1.7476 -0.0134 31 1 2.1215 2.2729 -0.8831 32 1 2.1434 2.2650 0.8966 33 1 2.5361 -0.1795 -2.3170 34 1 3.4975 -1.2402 -1.2824 35 1 0.7642 -1.7481 -2.4938 36 1 2.2333 -2.7404 -2.5950 37 1 0.2646 -2.4811 -0.2961 38 1 0.9171 -3.9551 -1.0519 39 1 2.8435 -5.1600 -1.3333 40 1 3.5729 -3.6983 -2.0405 41 1 5.7534 -4.2939 -1.0203 42 1 5.0234 -5.7553 -0.3134 43 1 7.1079 -5.8150 -0.5520 44 1 9.2546 -7.0010 -0.7642 45 1 9.7736 -8.2520 -2.8191 46 1 7.4438 -9.2721 -5.2127 47 1 8.5364 -8.0665 -6.9617 48 1 5.9906 -7.1557 -4.4532 49 1 2.2359 -2.8115 2.3466 50 1 0.8090 -2.1196 1.5596 51 1 2.2016 -0.3885 2.4410 52 1 3.5912 -1.0011 1.4951 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915400_4549614.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 18:29:18 Heat of formation + Delta-G solvation = -103.123593 kcal Electronic energy + Delta-G solvation = -29285.536363 eV Core-core repulsion = 25374.445625 eV Total energy + Delta-G solvation = -3911.090738 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 351.182 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.57296 -41.08526 -39.12164 -37.88690 -37.32417 -34.36906 -33.02091 -32.62212 -31.66379 -30.71716 -29.00709 -28.62299 -27.25589 -26.94469 -25.67034 -23.72865 -23.33447 -22.55502 -21.78523 -19.99880 -18.97661 -18.47380 -18.01980 -17.54532 -17.49317 -17.11043 -16.98720 -16.35220 -15.87379 -15.68922 -15.62485 -15.18699 -14.94816 -14.80594 -14.58239 -14.51914 -14.36029 -14.22728 -14.02441 -13.82974 -13.66933 -13.45023 -13.38928 -13.15691 -12.97058 -12.96638 -12.85416 -12.52025 -12.43806 -12.37795 -12.12991 -12.04886 -11.91919 -11.86594 -11.72505 -11.65770 -10.99828 -10.75349 -10.45138 -10.37834 -10.24629 -9.93825 -9.71962 -9.31948 0.15423 0.33543 1.14731 1.47044 1.47747 1.52366 1.62961 1.76778 1.91585 1.98445 2.02159 2.35705 2.59203 2.66786 3.43294 3.48862 3.70992 3.80614 3.82678 3.87638 3.94322 4.01453 4.12408 4.19366 4.21061 4.25541 4.29089 4.33391 4.46339 4.53921 4.57125 4.59606 4.67467 4.71529 4.72594 4.74935 4.76518 4.86331 4.89432 4.93774 4.98829 5.02635 5.14614 5.19598 5.29657 5.31698 5.39819 5.40915 5.45568 5.53232 5.59788 5.63989 5.74843 6.28201 6.42896 6.82064 7.06126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.445 4.445 2 Si 1.055 2.945 3 C -0.467 4.467 4 C -0.423 4.423 5 C -0.127 4.127 6 C 0.074 3.926 7 N -0.598 5.598 8 C 0.529 3.471 9 O -0.583 6.583 10 C -0.137 4.137 11 C 0.075 3.925 12 O -0.320 6.320 13 C 0.118 3.882 14 C -0.213 4.213 15 C -0.077 4.077 16 C -0.173 4.173 17 C -0.048 4.048 18 C -0.085 4.085 19 O -0.562 6.562 20 Si 0.985 3.015 21 H -0.258 1.258 22 H -0.252 1.252 23 H -0.271 1.271 24 C -0.136 4.136 25 C 0.115 3.885 26 C -0.437 4.437 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.047 0.953 35 H 0.094 0.906 36 H 0.064 0.936 37 H 0.120 0.880 38 H 0.093 0.907 39 H 0.126 0.874 40 H 0.123 0.877 41 H 0.061 0.939 42 H 0.066 0.934 43 H 0.137 0.863 44 H 0.150 0.850 45 H 0.133 0.867 46 H 0.098 0.902 47 H 0.399 0.601 48 H 0.137 0.863 49 H 0.046 0.954 50 H 0.112 0.888 51 H 0.098 0.902 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.918 -0.236 -2.540 6.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.554 4.554 2 Si 1.246 2.754 3 C -0.573 4.573 4 C -0.507 4.507 5 C -0.165 4.165 6 C -0.049 4.049 7 N -0.329 5.329 8 C 0.318 3.682 9 O -0.463 6.463 10 C -0.176 4.176 11 C 0.000 4.000 12 O -0.235 6.235 13 C 0.073 3.927 14 C -0.232 4.232 15 C -0.095 4.095 16 C -0.191 4.191 17 C -0.049 4.049 18 C -0.195 4.195 19 O -0.372 6.372 20 Si 0.809 3.191 21 H -0.182 1.182 22 H -0.176 1.176 23 H -0.196 1.196 24 C -0.154 4.154 25 C -0.006 4.006 26 C -0.520 4.520 27 H 0.091 0.909 28 H 0.097 0.903 29 H 0.103 0.897 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.066 0.934 35 H 0.112 0.888 36 H 0.082 0.918 37 H 0.137 0.863 38 H 0.112 0.888 39 H 0.144 0.856 40 H 0.140 0.860 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.154 0.846 44 H 0.168 0.832 45 H 0.151 0.849 46 H 0.116 0.884 47 H 0.250 0.750 48 H 0.155 0.845 49 H 0.065 0.935 50 H 0.130 0.870 51 H 0.117 0.883 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.947 -0.259 -1.659 5.224 hybrid contribution 0.407 0.156 -0.074 0.442 sum -4.540 -0.102 -1.733 4.860 Atomic orbital electron populations 1.26236 1.18479 1.05455 1.05248 0.78669 0.67733 0.64434 0.64548 1.26334 1.05775 1.20589 1.04624 1.26629 1.04312 1.04150 1.15657 1.22435 1.00846 0.95812 0.97397 1.22429 0.90490 1.02618 0.89358 1.47538 1.16780 1.49675 1.18957 1.20335 0.81009 0.78573 0.88269 1.90718 1.45487 1.63946 1.46165 1.21618 0.97515 1.01751 0.96718 1.22426 0.97498 0.95336 0.84755 1.85948 1.33816 1.64020 1.39672 1.19141 0.85317 0.93402 0.94861 1.21522 0.96063 1.05628 0.99945 1.21176 0.96123 0.94386 0.97775 1.21164 0.99851 1.03153 0.94904 1.19362 0.93327 0.97366 0.94814 1.24856 1.11931 0.96224 0.86475 1.86467 1.94626 1.36569 1.19499 0.85200 0.75449 0.77669 0.80822 1.18164 1.17612 1.19558 1.20357 0.98452 1.00020 0.96589 1.19898 1.01708 0.92562 0.86476 1.25659 1.04530 1.04289 1.17569 0.90862 0.90319 0.89690 0.92487 0.91041 0.91002 0.90686 0.93428 0.88774 0.91772 0.86262 0.88850 0.85565 0.85961 0.92095 0.91561 0.84572 0.83216 0.84942 0.88422 0.75016 0.84468 0.93518 0.87025 0.88308 0.92867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 3.87 8.44 113.37 0.96 4.83 16 2 Si 1.05 -6.27 10.45 68.60 0.72 -5.56 16 3 C -0.47 0.94 8.65 113.37 0.98 1.92 16 4 C -0.42 1.61 4.23 72.82 0.31 1.92 16 5 C -0.13 0.91 5.45 32.15 0.18 1.08 16 6 C 0.07 -0.59 5.07 87.51 0.44 -0.15 16 7 N -0.60 0.80 1.83 -834.57 -1.53 -0.72 16 8 C 0.53 2.33 7.02 87.66 0.62 2.95 16 9 O -0.58 -7.73 16.02 -3.04 -0.05 -7.78 16 10 C -0.14 -0.01 4.81 29.85 0.14 0.13 16 11 C 0.08 0.36 4.03 71.98 0.29 0.65 16 12 O -0.32 -2.29 10.14 -92.46 -0.94 -3.22 16 13 C 0.12 0.98 6.69 22.51 0.15 1.13 16 14 C -0.21 -1.46 9.04 22.37 0.20 -1.25 16 15 C -0.08 -0.38 10.04 22.25 0.22 -0.16 16 16 C -0.17 -0.93 8.67 22.28 0.19 -0.73 16 17 C -0.05 -0.29 5.38 -19.88 -0.11 -0.39 16 18 C -0.09 -0.05 2.79 71.24 0.20 0.14 16 19 O -0.56 -0.86 12.81 -148.98 -1.91 -2.77 16 20 Si 0.98 -0.43 25.14 68.60 1.72 1.30 16 21 H -0.26 -0.20 7.11 99.48 0.71 0.50 16 22 H -0.25 0.35 7.11 99.48 0.71 1.06 16 23 H -0.27 -0.87 7.04 99.48 0.70 -0.17 16 24 C -0.14 -1.02 9.62 22.36 0.22 -0.80 16 25 C 0.11 -0.16 4.79 84.11 0.40 0.24 16 26 C -0.44 0.45 5.16 69.80 0.36 0.81 16 27 H 0.07 -0.60 7.96 -2.39 -0.02 -0.62 16 28 H 0.08 -0.69 7.96 -2.39 -0.02 -0.71 16 29 H 0.08 -0.95 4.82 -2.38 -0.01 -0.96 16 30 H 0.06 0.02 7.96 -2.39 -0.02 0.00 16 31 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 32 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 33 H 0.07 -0.30 7.90 -2.39 -0.02 -0.32 16 34 H 0.05 0.03 7.40 -2.38 -0.02 0.02 16 35 H 0.09 -0.97 8.14 -2.39 -0.02 -0.98 16 36 H 0.06 -0.41 5.93 -2.39 -0.01 -0.42 16 37 H 0.12 -1.46 4.27 -2.38 -0.01 -1.47 16 38 H 0.09 -0.99 7.70 -2.39 -0.02 -1.01 16 39 H 0.13 -0.52 7.84 -2.39 -0.02 -0.54 16 40 H 0.12 -0.27 5.72 -2.38 -0.01 -0.28 16 41 H 0.06 0.40 7.61 -2.38 -0.02 0.38 16 42 H 0.07 0.37 7.63 -2.39 -0.02 0.36 16 43 H 0.14 0.71 6.30 -2.91 -0.02 0.69 16 44 H 0.15 0.00 8.06 -2.91 -0.02 -0.02 16 45 H 0.13 0.30 4.86 -2.91 -0.01 0.29 16 46 H 0.10 -0.36 7.96 -2.39 -0.02 -0.38 16 47 H 0.40 -3.24 8.74 -74.06 -0.65 -3.89 16 48 H 0.14 0.80 8.06 -2.91 -0.02 0.78 16 49 H 0.05 0.17 7.91 -2.39 -0.02 0.15 16 50 H 0.11 -0.91 6.14 -2.39 -0.01 -0.92 16 51 H 0.10 -0.31 8.02 -2.39 -0.02 -0.33 16 52 H 0.05 0.28 8.02 -2.39 -0.02 0.26 16 Total: 0.00 -20.17 396.36 4.80 -15.37 By element: Atomic # 1 Polarization: -9.96 SS G_CDS: 1.02 Total: -8.94 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: 5.75 Total: 12.32 kcal Atomic # 7 Polarization: 0.80 SS G_CDS: -1.53 Total: -0.72 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: -2.89 Total: -13.77 kcal Atomic # 14 Polarization: -6.70 SS G_CDS: 2.44 Total: -4.26 kcal Total: -20.17 4.80 -15.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915400_4549614.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.753 kcal (2) G-P(sol) polarization free energy of solvation -20.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds