Wall clock time and date at job start Thu Mar 4 2021 18:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86294 * 1 3 3 C 1.86303 * 109.44015 * 2 1 4 4 C 1.88799 * 109.44147 * 119.92423 * 2 1 3 5 5 C 1.49874 * 108.19207 * 50.78233 * 4 2 1 6 6 C 1.54273 * 114.56146 * 84.46152 * 5 4 2 7 7 N 1.47118 * 117.97541 * 314.21664 * 6 5 4 8 8 C 1.34772 * 118.22962 * 134.74121 * 7 6 5 9 9 O 1.21284 * 119.99979 * 180.02562 * 8 7 6 10 10 C 1.50705 * 120.00258 * 0.02963 * 8 7 6 11 11 C 1.53005 * 109.47215 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.47134 * 180.02562 * 11 10 8 13 13 O 1.42899 * 109.47332 * 179.97438 * 12 11 10 14 14 C 1.35900 * 117.00155 * 179.97438 * 13 12 11 15 15 C 1.38708 * 120.05609 * 359.72390 * 14 13 12 16 16 C 1.38160 * 119.94384 * 179.72062 * 15 14 13 17 17 C 1.38246 * 120.05615 * 0.57484 * 16 15 14 18 18 C 1.38288 * 120.10883 * 359.68149 * 17 16 15 19 19 C 1.50702 * 119.97016 * 180.02562 * 18 17 16 20 20 O 1.42905 * 109.47052 * 245.02005 * 19 18 17 21 21 Si 1.86302 * 109.47177 * 5.02067 * 19 18 17 22 22 H 1.48497 * 109.47051 * 59.99779 * 21 19 18 23 23 H 1.48496 * 109.47004 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46927 * 299.99779 * 21 19 18 25 25 C 1.38114 * 120.05677 * 0.04092 * 18 17 16 26 26 C 1.42774 * 123.53569 * 314.77322 * 7 6 5 27 27 C 1.54950 * 107.21088 * 96.91820 * 26 7 6 28 28 H 1.08996 * 109.47250 * 300.07869 * 1 2 3 29 29 H 1.09005 * 109.46871 * 60.07779 * 1 2 3 30 30 H 1.08999 * 109.47512 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46999 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47108 * 299.92458 * 3 2 1 33 33 H 1.08996 * 109.47097 * 59.92409 * 3 2 1 34 34 H 1.09002 * 109.72754 * 170.47128 * 4 2 1 35 35 H 1.08998 * 109.72375 * 291.09767 * 4 2 1 36 36 H 1.09008 * 108.45437 * 205.85374 * 5 4 2 37 37 H 1.09000 * 108.45658 * 323.19464 * 5 4 2 38 38 H 1.09004 * 107.72788 * 192.06635 * 6 5 4 39 39 H 1.08999 * 107.68523 * 76.34268 * 6 5 4 40 40 H 1.09006 * 109.46383 * 299.99380 * 10 8 7 41 41 H 1.08998 * 109.47285 * 59.99692 * 10 8 7 42 42 H 1.09006 * 109.46535 * 299.99700 * 11 10 8 43 43 H 1.08995 * 109.47483 * 59.99220 * 11 10 8 44 44 H 1.09005 * 109.46816 * 299.99734 * 12 11 10 45 45 H 1.08995 * 109.47583 * 59.99268 * 12 11 10 46 46 H 1.08003 * 120.02972 * 0.02562 * 15 14 13 47 47 H 1.08008 * 119.97336 * 180.27602 * 16 15 14 48 48 H 1.08000 * 119.94595 * 179.69484 * 17 16 15 49 49 H 1.08997 * 109.47207 * 125.02088 * 19 18 17 50 50 H 0.96696 * 113.99697 * 60.00129 * 20 19 18 51 51 H 1.08008 * 120.02897 * 180.02562 * 25 18 17 52 52 H 1.08997 * 109.90809 * 337.48889 * 26 7 6 53 53 H 1.09004 * 109.97040 * 216.38486 * 26 7 6 54 54 H 1.09001 * 109.04513 * 163.35044 * 27 26 7 55 55 H 1.09000 * 109.04663 * 44.46738 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4830 1.7568 0.0000 4 6 2.4913 -0.8881 1.5430 5 6 1.7982 -2.2138 1.6348 6 6 2.4539 -3.3389 0.8077 7 7 2.8527 -3.0359 -0.5756 8 6 4.0678 -3.4434 -0.9925 9 8 4.4295 -3.2103 -2.1265 10 6 4.9771 -4.1889 -0.0499 11 6 6.2838 -4.5334 -0.7674 12 6 7.2066 -5.2907 0.1895 13 8 8.4268 -5.6131 -0.4808 14 6 9.3630 -6.2909 0.2340 15 6 9.1147 -6.6337 1.5550 16 6 10.0658 -7.3279 2.2777 17 6 11.2688 -7.6706 1.6892 18 6 11.5209 -7.3254 0.3740 19 6 12.8332 -7.7010 -0.2647 20 8 13.5653 -6.5154 -0.5816 21 14 13.8236 -8.7447 0.9188 22 1 13.0628 -9.9767 1.2482 23 1 15.1169 -9.1143 0.2897 24 1 14.0807 -7.9744 2.1621 25 6 10.5711 -6.6364 -0.3545 26 6 2.0222 -2.3328 -1.4999 27 6 2.4633 -0.8476 -1.4748 28 1 -0.3633 0.5150 0.8892 29 1 -0.3633 0.5127 -0.8907 30 1 -0.3634 -1.0276 0.0005 31 1 3.5730 1.7574 0.0005 32 1 2.1205 2.2700 -0.8906 33 1 2.1183 2.2708 0.8893 34 1 3.5680 -1.0404 1.4671 35 1 2.2655 -0.2929 2.4277 36 1 1.7766 -2.5202 2.6807 37 1 0.7702 -2.0900 1.2943 38 1 1.7576 -4.1770 0.7767 39 1 3.3426 -3.6699 1.3449 40 1 5.1920 -3.5643 0.8173 41 1 4.4887 -5.1073 0.2758 42 1 6.0684 -5.1580 -1.6344 43 1 6.7723 -3.6152 -1.0935 44 1 7.4220 -4.6665 1.0567 45 1 6.7179 -6.2089 0.5152 46 1 8.1768 -6.3624 2.0166 47 1 9.8711 -7.5989 3.3050 48 1 12.0130 -8.2089 2.2574 49 1 12.6445 -8.2663 -1.1772 50 1 13.7690 -5.9622 0.1849 51 1 10.7683 -6.3674 -1.3818 52 1 0.9782 -2.4150 -1.1977 53 1 2.1514 -2.7416 -2.5021 54 1 2.0706 -0.3449 -2.3586 55 1 3.5521 -0.7996 -1.4942 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915400_4549616.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 18:29:34 Heat of formation + Delta-G solvation = -119.898107 kcal Electronic energy + Delta-G solvation = -30508.102093 eV Core-core repulsion = 26440.746338 eV Total energy + Delta-G solvation = -4067.355755 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.198 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.42411 -41.16721 -39.20862 -37.59685 -37.27843 -35.10576 -33.94382 -32.46209 -31.98373 -31.06378 -29.12551 -28.37470 -28.16937 -27.04264 -26.79653 -24.57226 -23.71067 -22.93826 -22.21188 -21.82368 -19.70902 -19.08351 -18.33566 -17.95343 -17.54428 -17.26504 -17.06239 -16.87265 -16.61442 -16.15730 -15.65553 -15.44252 -15.31742 -15.01727 -14.94317 -14.66358 -14.45476 -14.40188 -14.23390 -14.03576 -13.93509 -13.53971 -13.46184 -13.31118 -13.19457 -13.12549 -13.11298 -13.05203 -12.86492 -12.74741 -12.53057 -12.34403 -12.26839 -12.12042 -12.10504 -11.87975 -11.66576 -11.60121 -11.49855 -10.82472 -10.75850 -10.58270 -10.46114 -10.16326 -9.92581 -9.61433 -9.25132 0.21350 0.39369 1.16189 1.47435 1.54537 1.58734 1.88321 1.91030 1.95845 1.96337 2.02815 2.31256 2.67518 2.75806 3.44092 3.53495 3.69470 3.83012 3.85763 3.90241 3.94258 4.04947 4.10842 4.17118 4.21710 4.30101 4.33286 4.36040 4.41954 4.45634 4.48702 4.55359 4.57488 4.63407 4.70574 4.73173 4.76802 4.77297 4.86517 4.90200 4.95960 4.98899 4.99387 5.06198 5.08941 5.15050 5.28038 5.35174 5.36948 5.38668 5.43908 5.52205 5.57269 5.67808 5.73487 5.81115 6.34149 6.43207 6.68295 7.19303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.456 4.456 2 Si 1.072 2.928 3 C -0.471 4.471 4 C -0.400 4.400 5 C -0.121 4.121 6 C 0.089 3.911 7 N -0.596 5.596 8 C 0.500 3.500 9 O -0.587 6.587 10 C -0.131 4.131 11 C -0.101 4.101 12 C 0.059 3.941 13 O -0.338 6.338 14 C 0.117 3.883 15 C -0.205 4.205 16 C -0.074 4.074 17 C -0.174 4.174 18 C -0.084 4.084 19 C -0.089 4.089 20 O -0.554 6.554 21 Si 0.995 3.005 22 H -0.254 1.254 23 H -0.277 1.277 24 H -0.246 1.246 25 C -0.147 4.147 26 C 0.127 3.873 27 C -0.465 4.465 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.101 0.899 40 H 0.127 0.873 41 H 0.128 0.872 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.154 0.846 47 H 0.156 0.844 48 H 0.136 0.864 49 H 0.119 0.881 50 H 0.389 0.611 51 H 0.121 0.879 52 H 0.104 0.896 53 H 0.052 0.948 54 H 0.075 0.925 55 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.891 -1.303 9.986 11.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.563 4.563 2 Si 1.263 2.737 3 C -0.576 4.576 4 C -0.487 4.487 5 C -0.159 4.159 6 C -0.032 4.032 7 N -0.327 5.327 8 C 0.289 3.711 9 O -0.467 6.467 10 C -0.170 4.170 11 C -0.139 4.139 12 C -0.016 4.016 13 O -0.252 6.252 14 C 0.072 3.928 15 C -0.224 4.224 16 C -0.091 4.091 17 C -0.191 4.191 18 C -0.085 4.085 19 C -0.198 4.198 20 O -0.361 6.361 21 Si 0.818 3.182 22 H -0.178 1.178 23 H -0.203 1.203 24 H -0.170 1.170 25 C -0.166 4.166 26 C 0.003 3.997 27 C -0.548 4.548 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.106 0.894 36 H 0.114 0.886 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.120 0.880 40 H 0.145 0.855 41 H 0.146 0.854 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.102 0.898 45 H 0.102 0.898 46 H 0.172 0.828 47 H 0.174 0.826 48 H 0.153 0.847 49 H 0.137 0.863 50 H 0.238 0.762 51 H 0.139 0.861 52 H 0.122 0.878 53 H 0.071 0.929 54 H 0.094 0.906 55 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.314 -1.860 9.139 10.276 hybrid contribution -0.180 0.872 -0.638 1.095 sum -4.494 -0.988 8.501 9.667 Atomic orbital electron populations 1.26272 1.20704 1.04811 1.04492 0.77974 0.66298 0.64338 0.65081 1.26390 1.05836 1.21101 1.04268 1.25590 1.04790 1.03378 1.14902 1.21061 1.00053 0.93770 1.01010 1.22192 1.02926 0.98526 0.79591 1.47275 1.15945 1.56161 1.13349 1.21257 0.82558 0.79028 0.88220 1.90723 1.74735 1.58544 1.22729 1.21645 0.93751 1.02994 0.98635 1.21156 0.94091 1.00422 0.98266 1.22983 0.82290 1.00536 0.95753 1.86058 1.26764 1.70711 1.41678 1.19222 0.89335 0.92978 0.91313 1.21585 1.02853 1.04705 0.93246 1.21264 0.92076 0.94969 1.00823 1.21211 0.99345 1.03939 0.94654 1.20213 0.96269 0.97735 0.94269 1.25220 0.92171 0.93823 1.08612 1.86496 1.75059 1.35940 1.38636 0.85042 0.77715 0.78380 0.77035 1.17830 1.20265 1.16983 1.20349 0.92069 1.03052 1.01139 1.20673 0.95314 0.90454 0.93276 1.27040 1.05872 1.03199 1.18728 0.90772 0.91744 0.90435 0.92189 0.92040 0.90778 0.91048 0.89411 0.88632 0.91166 0.90045 0.88049 0.85473 0.85422 0.92267 0.92351 0.89797 0.89751 0.82820 0.82627 0.84688 0.86297 0.76192 0.86098 0.87827 0.92929 0.90605 0.92560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.51 8.35 113.37 0.95 3.45 16 2 Si 1.07 -5.86 10.48 68.60 0.72 -5.14 16 3 C -0.47 0.64 8.65 113.37 0.98 1.62 16 4 C -0.40 3.07 4.83 70.98 0.34 3.41 16 5 C -0.12 1.22 5.32 30.02 0.16 1.38 16 6 C 0.09 -0.82 5.83 86.69 0.51 -0.31 16 7 N -0.60 0.94 2.45 -822.84 -2.02 -1.08 16 8 C 0.50 1.70 7.20 87.66 0.63 2.34 16 9 O -0.59 -8.37 15.19 -3.04 -0.05 -8.41 16 10 C -0.13 0.64 3.98 29.85 0.12 0.76 16 11 C -0.10 -0.12 4.87 30.59 0.15 0.03 16 12 C 0.06 -0.11 4.74 71.98 0.34 0.23 16 13 O -0.34 -2.16 10.14 -92.43 -0.94 -3.09 16 14 C 0.12 0.61 6.69 22.51 0.15 0.76 16 15 C -0.21 0.03 9.04 22.36 0.20 0.23 16 16 C -0.07 0.10 10.04 22.25 0.22 0.33 16 17 C -0.17 -0.08 8.67 22.28 0.19 0.12 16 18 C -0.08 -0.26 5.35 -19.88 -0.11 -0.36 16 19 C -0.09 -0.11 2.80 71.24 0.20 0.09 16 20 O -0.55 -1.68 12.83 -148.98 -1.91 -3.59 16 21 Si 1.00 -0.93 25.14 68.60 1.72 0.79 16 22 H -0.25 0.08 7.11 99.48 0.71 0.79 16 23 H -0.28 -0.75 7.11 99.48 0.71 -0.05 16 24 H -0.25 0.48 7.04 99.48 0.70 1.18 16 25 C -0.15 -0.95 9.62 22.36 0.22 -0.73 16 26 C 0.13 0.08 5.36 87.73 0.47 0.55 16 27 C -0.47 -0.38 4.47 72.65 0.32 -0.05 16 28 H 0.07 -0.44 7.96 -2.39 -0.02 -0.46 16 29 H 0.06 -0.25 7.96 -2.38 -0.02 -0.27 16 30 H 0.08 -0.54 6.53 -2.39 -0.02 -0.56 16 31 H 0.06 0.01 7.96 -2.39 -0.02 -0.01 16 32 H 0.06 -0.01 7.96 -2.39 -0.02 -0.03 16 33 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 34 H 0.07 -0.46 7.90 -2.39 -0.02 -0.48 16 35 H 0.09 -0.77 7.99 -2.39 -0.02 -0.79 16 36 H 0.10 -1.21 8.14 -2.38 -0.02 -1.23 16 37 H 0.07 -0.76 5.94 -2.39 -0.01 -0.77 16 38 H 0.08 -0.93 8.14 -2.38 -0.02 -0.95 16 39 H 0.10 -1.33 5.49 -2.39 -0.01 -1.35 16 40 H 0.13 -1.33 7.44 -2.38 -0.02 -1.35 16 41 H 0.13 -1.37 7.94 -2.39 -0.02 -1.39 16 42 H 0.06 0.34 8.10 -2.38 -0.02 0.33 16 43 H 0.06 0.35 8.10 -2.39 -0.02 0.33 16 44 H 0.08 -0.50 7.65 -2.38 -0.02 -0.52 16 45 H 0.08 -0.51 7.67 -2.39 -0.02 -0.52 16 46 H 0.15 -0.90 6.30 -2.91 -0.02 -0.92 16 47 H 0.16 -1.12 8.06 -2.91 -0.02 -1.14 16 48 H 0.14 -0.38 4.86 -2.91 -0.01 -0.40 16 49 H 0.12 0.05 7.96 -2.39 -0.02 0.03 16 50 H 0.39 -1.48 8.70 -74.06 -0.64 -2.13 16 51 H 0.12 0.98 8.06 -2.91 -0.02 0.96 16 52 H 0.10 -0.51 7.14 -2.39 -0.02 -0.53 16 53 H 0.05 0.34 7.46 -2.39 -0.02 0.32 16 54 H 0.08 0.11 7.89 -2.39 -0.02 0.09 16 55 H 0.06 0.34 7.28 -2.39 -0.02 0.32 16 Total: 0.00 -22.92 423.85 4.55 -18.37 By element: Atomic # 1 Polarization: -12.66 SS G_CDS: 0.97 Total: -11.69 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: 6.05 Total: 13.84 kcal Atomic # 7 Polarization: 0.94 SS G_CDS: -2.02 Total: -1.08 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: -2.90 Total: -15.10 kcal Atomic # 14 Polarization: -6.79 SS G_CDS: 2.44 Total: -4.35 kcal Total: -22.92 4.55 -18.37 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915400_4549616.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.532 kcal (2) G-P(sol) polarization free energy of solvation -22.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds