Wall clock time and date at job start Thu Mar 4 2021 18:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35998 * 117.00236 * 2 1 4 4 C 1.38518 * 120.06814 * 0.31846 * 3 2 1 5 5 C 1.38295 * 119.99847 * 180.29511 * 4 3 2 6 6 C 1.50695 * 119.93033 * 179.70190 * 5 4 3 7 7 O 1.42903 * 109.47073 * 104.97777 * 6 5 4 8 8 Si 1.86303 * 109.47184 * 344.98019 * 6 5 4 9 9 H 1.48496 * 109.47019 * 59.99588 * 8 6 5 10 10 H 1.48500 * 109.47311 * 179.97438 * 8 6 5 11 11 H 1.48510 * 109.46891 * 299.99996 * 8 6 5 12 12 C 1.38211 * 120.14213 * 359.68504 * 5 4 3 13 13 N 1.47999 * 119.92760 * 180.02562 * 12 5 4 14 14 O 1.21799 * 120.00781 * 179.97438 * 13 12 5 15 15 O 1.21810 * 119.99926 * 359.97438 * 13 12 5 16 16 C 1.38286 * 120.14753 * 359.97438 * 12 5 4 17 17 C 1.38529 * 119.99940 * 0.02562 * 16 12 5 18 18 O 1.35994 * 120.07038 * 180.02562 * 17 16 12 19 19 C 1.42900 * 117.00089 * 359.97438 * 18 17 16 20 20 C 1.50705 * 109.47097 * 179.97438 * 19 18 17 21 21 O 1.21284 * 119.99762 * 0.02562 * 20 19 18 22 22 N 1.34772 * 120.00258 * 179.97438 * 20 19 18 23 23 C 1.47121 * 118.22834 * 359.97438 * 22 20 19 24 24 C 1.54333 * 117.93537 * 134.72079 * 23 22 20 25 25 C 1.49874 * 114.58760 * 314.26075 * 24 23 22 26 26 Si 1.88799 * 108.19207 * 84.45359 * 25 24 23 27 27 C 1.86294 * 109.44147 * 50.78233 * 26 25 24 28 28 C 1.86303 * 109.43970 * 170.70683 * 26 25 24 29 29 C 1.80385 * 109.65438 * 290.72505 * 26 25 24 30 30 C 1.42774 * 118.23468 * 179.97438 * 22 20 19 31 31 H 1.08991 * 109.47131 * 299.99870 * 1 2 3 32 32 H 1.09004 * 109.46876 * 59.99992 * 1 2 3 33 33 H 1.09004 * 109.47048 * 179.97438 * 1 2 3 34 34 H 1.08003 * 120.00819 * 0.02562 * 4 3 2 35 35 H 1.08995 * 109.47139 * 224.98226 * 6 5 4 36 36 H 0.96697 * 113.99757 * 300.00379 * 7 6 5 37 37 H 1.08000 * 120.00135 * 180.02562 * 16 12 5 38 38 H 1.09006 * 109.47024 * 60.00975 * 19 18 17 39 39 H 1.08998 * 109.47278 * 300.00275 * 19 18 17 40 40 H 1.09001 * 107.74717 * 256.88400 * 23 22 20 41 41 H 1.08998 * 107.75494 * 12.64683 * 23 22 20 42 42 H 1.09008 * 108.52362 * 192.89856 * 24 23 22 43 43 H 1.09000 * 108.41266 * 75.54381 * 24 23 22 44 44 H 1.09002 * 109.72672 * 324.76412 * 25 24 23 45 45 H 1.08998 * 109.72499 * 204.13747 * 25 24 23 46 46 H 1.08996 * 109.47250 * 60.00292 * 27 26 25 47 47 H 1.09005 * 109.46871 * 180.02562 * 27 26 25 48 48 H 1.08999 * 109.47512 * 299.99645 * 27 26 25 49 49 H 1.09003 * 109.46999 * 59.99839 * 28 26 25 50 50 H 1.08997 * 109.47108 * 179.97438 * 28 26 25 51 51 H 1.08996 * 109.47097 * 299.99878 * 28 26 25 52 52 H 1.09001 * 109.04528 * 178.31960 * 29 26 25 53 53 H 1.09000 * 109.04633 * 297.20257 * 29 26 25 54 54 H 1.08997 * 109.90809 * 157.52091 * 30 22 20 55 55 H 1.09004 * 109.97040 * 36.41688 * 30 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2935 2.3744 0.0067 5 6 1.9228 3.6058 0.0005 6 6 1.1021 4.8696 0.0010 7 8 1.1408 5.4622 1.3008 8 14 -0.6610 4.4654 -0.4450 9 1 -1.2173 3.5134 0.5497 10 1 -1.4699 5.7107 -0.4439 11 1 -0.7011 3.8495 -1.7958 12 6 3.3029 3.6798 -0.0058 13 7 3.9715 5.0002 -0.0118 14 8 5.1877 5.0672 -0.0168 15 8 3.3055 6.0201 -0.0117 16 6 4.0605 2.5230 -0.0053 17 6 3.4364 1.2863 0.0008 18 8 4.1800 0.1477 0.0018 19 6 5.6008 0.3007 -0.0044 20 6 6.2524 -1.0582 -0.0016 21 8 5.5674 -2.0591 0.0044 22 7 7.5961 -1.1613 -0.0070 23 6 8.3890 0.0780 -0.0161 24 6 9.5911 0.1743 0.9471 25 6 9.3082 -0.2853 2.3453 26 14 9.5235 -2.1601 2.4044 27 6 11.1699 -2.6189 1.6632 28 6 9.4585 -2.7361 4.1750 29 6 8.2014 -2.9525 1.4673 30 6 8.1734 -2.4671 -0.0036 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 0.2149 2.3193 0.0123 35 1 1.5105 5.5683 -0.7292 36 1 0.7919 4.8951 2.0020 37 1 5.1388 2.5836 -0.0098 38 1 5.9105 0.8534 0.8827 39 1 5.9035 0.8474 -0.8974 40 1 8.7621 0.2263 -1.0294 41 1 7.7160 0.9049 0.2104 42 1 9.9219 1.2122 0.9854 43 1 10.4047 -0.4286 0.5437 44 1 8.2860 -0.0236 2.6189 45 1 10.0064 0.1871 3.0362 46 1 11.9693 -2.1430 2.2311 47 1 11.2944 -3.7012 1.6967 48 1 11.2090 -2.2809 0.6276 49 1 8.4958 -2.4668 4.6096 50 1 9.5823 -3.8185 4.2097 51 1 10.2589 -2.2602 4.7415 52 1 8.3520 -4.0319 1.4829 53 1 7.2450 -2.7213 1.9364 54 1 9.1879 -2.4254 -0.4001 55 1 7.5673 -3.1436 -0.6062 RHF calculation, no. of doubly occupied orbitals= 75 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915400_4549636.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 18:30:56 Heat of formation + Delta-G solvation = -125.490549 kcal Electronic energy + Delta-G solvation = -39236.821690 eV Core-core repulsion = 34175.062420 eV Total energy + Delta-G solvation = -5061.759270 eV No. of doubly occupied orbitals = 75 Molecular weight (most abundant/longest-lived isotopes) = 412.176 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -43.37552 -42.18689 -41.41295 -39.82576 -39.23797 -37.76431 -37.54569 -37.11601 -34.08611 -32.87595 -32.69518 -32.06625 -29.64646 -28.99730 -28.67395 -28.36421 -27.90873 -27.13029 -25.87963 -24.48665 -23.63124 -23.13890 -22.38011 -20.81290 -20.21913 -19.66094 -19.54606 -18.85402 -18.64187 -18.18479 -17.89402 -17.85373 -17.40896 -17.12549 -16.86989 -16.63417 -16.17816 -16.14801 -15.72580 -15.33841 -15.14240 -14.96307 -14.94179 -14.79900 -14.42995 -14.25463 -13.99734 -13.92047 -13.84360 -13.58984 -13.45882 -13.36453 -13.14539 -13.10367 -13.04248 -12.92464 -12.73591 -12.58743 -12.51630 -12.46088 -12.43358 -12.21950 -12.20260 -12.15688 -12.06261 -11.77059 -11.60580 -10.95749 -10.76355 -10.59165 -10.51993 -10.46215 -10.17860 -9.74487 -9.53156 -1.34279 -0.47339 0.17958 0.31883 1.00087 1.22893 1.33227 1.34031 1.46217 1.82441 1.86325 1.88308 1.89966 1.95211 2.02539 2.20548 2.74790 2.95121 3.07877 3.22871 3.29745 3.42697 3.55148 3.74411 3.83081 3.86716 3.88350 4.01314 4.04635 4.11386 4.23497 4.23954 4.25201 4.32678 4.33740 4.41346 4.55822 4.60506 4.65557 4.70650 4.71366 4.75277 4.77056 4.87094 4.89950 4.93783 5.00356 5.01917 5.29592 5.33064 5.37383 5.48819 5.51819 5.55659 5.64982 5.75413 5.99384 6.15740 6.53135 6.65053 6.97920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.000 4.000 2 O -0.308 6.308 3 C 0.167 3.833 4 C -0.180 4.180 5 C -0.038 4.038 6 C -0.098 4.098 7 O -0.533 6.533 8 Si 0.972 3.028 9 H -0.223 1.223 10 H -0.264 1.264 11 H -0.246 1.246 12 C -0.039 4.039 13 N 0.035 4.965 14 O -0.188 6.188 15 O -0.152 6.152 16 C -0.109 4.109 17 C 0.100 3.900 18 O -0.292 6.292 19 C 0.025 3.975 20 C 0.507 3.493 21 O -0.563 6.563 22 N -0.586 5.586 23 C 0.085 3.915 24 C -0.121 4.121 25 C -0.405 4.405 26 Si 1.075 2.925 27 C -0.455 4.455 28 C -0.472 4.472 29 C -0.465 4.465 30 C 0.127 3.873 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.124 0.876 34 H 0.181 0.819 35 H 0.128 0.872 36 H 0.386 0.614 37 H 0.184 0.816 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.076 0.924 44 H 0.068 0.932 45 H 0.087 0.913 46 H 0.072 0.928 47 H 0.065 0.935 48 H 0.078 0.922 49 H 0.058 0.942 50 H 0.062 0.938 51 H 0.072 0.928 52 H 0.081 0.919 53 H 0.056 0.944 54 H 0.112 0.888 55 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.599 -1.034 -0.261 1.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 O -0.219 6.219 3 C 0.118 3.882 4 C -0.199 4.199 5 C -0.040 4.040 6 C -0.207 4.207 7 O -0.339 6.339 8 Si 0.792 3.208 9 H -0.146 1.146 10 H -0.188 1.188 11 H -0.169 1.169 12 C -0.123 4.123 13 N 0.550 4.450 14 O -0.397 6.397 15 O -0.369 6.369 16 C -0.128 4.128 17 C 0.053 3.947 18 O -0.205 6.205 19 C -0.053 4.053 20 C 0.295 3.705 21 O -0.441 6.441 22 N -0.319 5.319 23 C -0.036 4.036 24 C -0.159 4.159 25 C -0.491 4.491 26 Si 1.266 2.734 27 C -0.563 4.563 28 C -0.577 4.577 29 C -0.549 4.549 30 C 0.004 3.996 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.142 0.858 34 H 0.198 0.802 35 H 0.146 0.854 36 H 0.235 0.765 37 H 0.201 0.799 38 H 0.143 0.857 39 H 0.145 0.855 40 H 0.109 0.891 41 H 0.111 0.889 42 H 0.114 0.886 43 H 0.094 0.906 44 H 0.087 0.913 45 H 0.106 0.894 46 H 0.091 0.909 47 H 0.084 0.916 48 H 0.097 0.903 49 H 0.077 0.923 50 H 0.081 0.919 51 H 0.091 0.909 52 H 0.100 0.900 53 H 0.075 0.925 54 H 0.130 0.870 55 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.612 -2.349 -0.822 2.563 hybrid contribution 0.332 -0.137 0.565 0.669 sum -0.279 -2.486 -0.258 2.515 Atomic orbital electron populations 1.23732 0.75084 1.06998 1.03557 1.86326 1.24460 1.24759 1.86401 1.18678 0.89278 0.86239 0.93956 1.21193 1.02044 0.88758 1.07924 1.20200 0.91314 0.97485 0.95002 1.25587 1.10565 0.93449 0.91062 1.86684 1.87061 1.44307 1.15826 0.85427 0.72764 0.80911 0.81727 1.14561 1.18793 1.16902 1.20495 0.92547 0.82174 1.17109 1.43625 1.00837 1.03241 0.97340 1.94508 0.96399 1.94034 1.54796 1.94578 1.64438 1.25075 1.52827 1.20909 1.03023 0.88113 1.00791 1.17969 0.88669 0.85290 1.02782 1.86307 1.18510 1.26952 1.88688 1.23067 0.78715 0.96631 1.06850 1.20372 0.83202 0.90303 0.76644 1.90766 1.63561 1.39782 1.49976 1.47151 1.04428 1.08304 1.72012 1.22301 0.95442 0.83883 1.02009 1.21070 0.96811 1.04242 0.93749 1.25661 1.04709 1.19534 0.99221 0.77933 0.64718 0.66635 0.64131 1.26265 1.17144 1.05376 1.07489 1.26402 1.03991 1.05840 1.21458 1.27013 1.14920 1.08786 1.04152 1.20783 0.99815 0.82860 0.96140 0.90046 0.90247 0.85809 0.80196 0.85427 0.76510 0.79872 0.85690 0.85489 0.89067 0.88908 0.88628 0.90551 0.91307 0.89407 0.90860 0.91572 0.90254 0.92275 0.91875 0.90890 0.90022 0.92494 0.87037 0.92285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 9.81 113.37 1.11 1.11 16 2 O -0.31 -0.68 10.28 -79.68 -0.82 -1.49 16 3 C 0.17 0.18 6.70 22.57 0.15 0.33 16 4 C -0.18 0.52 7.65 22.35 0.17 0.69 16 5 C -0.04 0.00 5.26 -19.86 -0.10 -0.10 16 6 C -0.10 0.06 1.74 71.23 0.12 0.18 16 7 O -0.53 -0.51 11.80 -129.62 -1.53 -2.04 16 8 Si 0.97 -4.63 25.49 68.60 1.75 -2.88 16 9 H -0.22 2.01 6.73 99.48 0.67 2.68 16 10 H -0.26 0.15 7.11 99.48 0.71 0.85 16 11 H -0.25 1.11 7.11 99.48 0.71 1.82 16 12 C -0.04 -0.12 6.85 36.38 0.25 0.13 16 13 N 0.04 0.29 4.45 -46.46 -0.21 0.08 16 14 O -0.19 -1.76 18.44 18.89 0.35 -1.41 16 15 O -0.15 -1.67 14.62 25.09 0.37 -1.30 16 16 C -0.11 0.01 8.54 22.35 0.19 0.20 16 17 C 0.10 0.21 6.70 22.57 0.15 0.36 16 18 O -0.29 -1.53 9.46 -67.08 -0.63 -2.16 16 19 C 0.02 -0.05 3.50 71.24 0.25 0.20 16 20 C 0.51 2.08 7.27 87.66 0.64 2.71 16 21 O -0.56 -8.36 15.71 15.99 0.25 -8.10 16 22 N -0.59 1.21 2.45 -822.76 -2.02 -0.81 16 23 C 0.08 -0.77 5.83 86.71 0.51 -0.27 16 24 C -0.12 1.20 5.32 30.04 0.16 1.36 16 25 C -0.41 2.99 4.83 70.98 0.34 3.33 16 26 Si 1.08 -6.51 10.48 68.60 0.72 -5.79 16 27 C -0.46 2.86 8.35 113.37 0.95 3.80 16 28 C -0.47 0.80 8.65 113.37 0.98 1.78 16 29 C -0.47 0.23 4.47 72.64 0.32 0.56 16 30 C 0.13 -0.11 5.36 87.72 0.47 0.36 16 31 H 0.08 -0.85 7.65 -2.39 -0.02 -0.87 16 32 H 0.08 -0.80 7.68 -2.38 -0.02 -0.82 16 33 H 0.12 -1.11 8.14 -2.38 -0.02 -1.13 16 34 H 0.18 -1.48 3.12 -2.91 -0.01 -1.49 16 35 H 0.13 0.23 6.07 -2.39 -0.01 0.22 16 36 H 0.39 -2.84 8.70 -74.06 -0.64 -3.48 16 37 H 0.18 -0.89 5.85 -2.91 -0.02 -0.91 16 38 H 0.13 -0.95 6.96 -2.38 -0.02 -0.97 16 39 H 0.13 -1.03 7.45 -2.39 -0.02 -1.04 16 40 H 0.09 -1.10 8.14 -2.39 -0.02 -1.12 16 41 H 0.09 -1.14 5.49 -2.39 -0.01 -1.15 16 42 H 0.10 -1.12 8.14 -2.38 -0.02 -1.14 16 43 H 0.08 -0.87 5.94 -2.39 -0.01 -0.89 16 44 H 0.07 -0.40 7.90 -2.39 -0.02 -0.42 16 45 H 0.09 -0.72 7.99 -2.39 -0.02 -0.74 16 46 H 0.07 -0.46 7.96 -2.39 -0.02 -0.48 16 47 H 0.07 -0.32 7.96 -2.38 -0.02 -0.34 16 48 H 0.08 -0.64 6.53 -2.39 -0.02 -0.65 16 49 H 0.06 0.00 7.96 -2.39 -0.02 -0.02 16 50 H 0.06 -0.05 7.96 -2.39 -0.02 -0.07 16 51 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 52 H 0.08 -0.03 7.89 -2.39 -0.02 -0.05 16 53 H 0.06 0.28 7.28 -2.39 -0.02 0.26 16 54 H 0.11 -0.77 7.14 -2.39 -0.02 -0.78 16 55 H 0.06 0.26 7.46 -2.39 -0.02 0.24 16 Total: 0.00 -27.78 432.30 5.91 -21.86 By element: Atomic # 1 Polarization: -13.71 SS G_CDS: 1.02 Total: -12.69 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: 6.66 Total: 16.73 kcal Atomic # 7 Polarization: 1.50 SS G_CDS: -2.22 Total: -0.72 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -2.02 Total: -16.51 kcal Atomic # 14 Polarization: -11.14 SS G_CDS: 2.47 Total: -8.68 kcal Total: -27.78 5.91 -21.86 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915400_4549636.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.628 kcal (2) G-P(sol) polarization free energy of solvation -27.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds