Wall clock time and date at job start Thu Mar 4 2021 18:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86294 * 1 3 3 C 1.86303 * 109.44015 * 2 1 4 4 C 1.88799 * 109.44147 * 119.92423 * 2 1 3 5 5 C 1.49874 * 108.19207 * 50.78233 * 4 2 1 6 6 C 1.54333 * 114.58760 * 84.45359 * 5 4 2 7 7 N 1.47121 * 117.93537 * 314.26075 * 6 5 4 8 8 C 1.34772 * 118.22834 * 134.72079 * 7 6 5 9 9 O 1.21284 * 119.99979 * 179.97438 * 8 7 6 10 10 C 1.50705 * 120.00258 * 359.97438 * 8 7 6 11 11 O 1.42900 * 109.47097 * 179.97438 * 10 8 7 12 12 C 1.35900 * 116.99839 * 179.97438 * 11 10 8 13 13 C 1.38708 * 120.05609 * 359.72120 * 12 11 10 14 14 C 1.38169 * 119.94458 * 179.74980 * 13 12 11 15 15 C 1.38249 * 120.05226 * 0.52411 * 14 13 12 16 16 C 1.50702 * 119.94216 * 179.72454 * 15 14 13 17 17 O 1.42891 * 109.47281 * 245.02340 * 16 15 14 18 18 Si 1.86299 * 109.47054 * 5.02709 * 16 15 14 19 19 H 1.48496 * 109.47522 * 59.99666 * 18 16 15 20 20 H 1.48503 * 109.47169 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47066 * 299.99559 * 18 16 15 22 22 C 1.38278 * 120.11441 * 359.74727 * 15 14 13 23 23 C 1.38127 * 120.05481 * 359.97438 * 22 15 14 24 24 N 1.48005 * 120.03129 * 180.02562 * 23 22 15 25 25 O 1.21805 * 119.99701 * 359.97371 * 24 23 22 26 26 O 1.21796 * 120.00520 * 179.97438 * 24 23 22 27 27 C 1.42774 * 123.53698 * 314.70878 * 7 6 5 28 28 C 1.54950 * 107.21088 * 96.96223 * 27 7 6 29 29 H 1.08996 * 109.47250 * 300.07869 * 1 2 3 30 30 H 1.09005 * 109.46871 * 60.07779 * 1 2 3 31 31 H 1.08999 * 109.47512 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46999 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47108 * 299.92458 * 3 2 1 34 34 H 1.08996 * 109.47097 * 59.92409 * 3 2 1 35 35 H 1.09002 * 109.72754 * 170.47128 * 4 2 1 36 36 H 1.08998 * 109.72375 * 291.09767 * 4 2 1 37 37 H 1.09008 * 108.45437 * 205.85374 * 5 4 2 38 38 H 1.09000 * 108.45658 * 323.19464 * 5 4 2 39 39 H 1.09001 * 107.76556 * 192.10691 * 6 5 4 40 40 H 1.08998 * 107.69398 * 76.36579 * 6 5 4 41 41 H 1.09006 * 109.46383 * 299.99380 * 10 8 7 42 42 H 1.08998 * 109.47285 * 59.99692 * 10 8 7 43 43 H 1.08006 * 120.03090 * 0.02562 * 13 12 11 44 44 H 1.07994 * 119.97254 * 180.27705 * 14 13 12 45 45 H 1.09001 * 109.46706 * 125.01965 * 16 15 14 46 46 H 0.96706 * 114.00430 * 179.97438 * 17 16 15 47 47 H 1.07997 * 119.97683 * 179.97438 * 22 15 14 48 48 H 1.08997 * 109.90809 * 337.53291 * 27 7 6 49 49 H 1.09004 * 109.97040 * 216.42889 * 27 7 6 50 50 H 1.09001 * 109.04513 * 163.35044 * 28 27 7 51 51 H 1.09000 * 109.04663 * 44.46738 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4830 1.7568 0.0000 4 6 2.4913 -0.8881 1.5430 5 6 1.7982 -2.2138 1.6348 6 6 2.4535 -3.3398 0.8074 7 7 2.8527 -3.0359 -0.5756 8 6 4.0678 -3.4434 -0.9925 9 8 4.4294 -3.2104 -2.1265 10 6 4.9772 -4.1886 -0.0498 11 8 6.1976 -4.5104 -0.7199 12 6 7.1341 -5.1875 -0.0049 13 6 6.8860 -5.5299 1.3162 14 6 7.8377 -6.2229 2.0395 15 6 9.0407 -6.5655 1.4509 16 6 10.0795 -7.3159 2.2440 17 8 11.2358 -6.4936 2.4127 18 14 9.3842 -7.7600 3.9143 19 1 8.1825 -8.6146 3.7391 20 1 10.4079 -8.4989 4.6961 21 1 9.0082 -6.5199 4.6396 22 6 9.2928 -6.2204 0.1358 23 6 8.3423 -5.5327 -0.5933 24 7 8.6125 -5.1641 -2.0011 25 8 9.6735 -5.4668 -2.5170 26 8 7.7739 -4.5581 -2.6436 27 6 2.0222 -2.3328 -1.4999 28 6 2.4633 -0.8476 -1.4748 29 1 -0.3633 0.5150 0.8892 30 1 -0.3633 0.5127 -0.8907 31 1 -0.3634 -1.0276 0.0005 32 1 3.5730 1.7574 0.0005 33 1 2.1205 2.2700 -0.8906 34 1 2.1183 2.2708 0.8893 35 1 3.5680 -1.0404 1.4671 36 1 2.2655 -0.2929 2.4277 37 1 1.7766 -2.5202 2.6807 38 1 0.7702 -2.0900 1.2943 39 1 1.7571 -4.1777 0.7758 40 1 3.3421 -3.6714 1.3446 41 1 5.1922 -3.5639 0.8173 42 1 4.4889 -5.1070 0.2761 43 1 5.9478 -5.2590 1.7778 44 1 7.6431 -6.4936 3.0667 45 1 10.3554 -8.2261 1.7116 46 1 11.9471 -6.9133 2.9157 47 1 10.2335 -6.4888 -0.3217 48 1 0.9782 -2.4150 -1.1977 49 1 2.1514 -2.7416 -2.5021 50 1 2.0706 -0.3449 -2.3586 51 1 3.5521 -0.7996 -1.4942 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915400_4549638.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 18:35:43 Heat of formation + Delta-G solvation = -98.540973 kcal Electronic energy + Delta-G solvation = -34145.278213 eV Core-core repulsion = 29558.907376 eV Total energy + Delta-G solvation = -4586.370837 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 382.161 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -43.31194 -41.92259 -41.07399 -39.46724 -37.62126 -37.59025 -37.33355 -34.06217 -33.57861 -32.55227 -32.13975 -29.62501 -28.84299 -28.36374 -27.83990 -27.09550 -26.55237 -24.63086 -23.66743 -22.69295 -22.32148 -20.50502 -20.03911 -19.80720 -19.15141 -18.68874 -18.48019 -18.26939 -17.74509 -17.60764 -16.95442 -16.48916 -16.27630 -15.93873 -15.73778 -15.39512 -15.19521 -14.97007 -14.60995 -14.48818 -14.31593 -14.25121 -13.95142 -13.81576 -13.80911 -13.45785 -13.41309 -13.16745 -13.13052 -13.08575 -12.91916 -12.71644 -12.67150 -12.56463 -12.37478 -12.28285 -12.17139 -12.11950 -11.97084 -11.80117 -11.73247 -10.89810 -10.86175 -10.76162 -10.58712 -10.39360 -10.16412 -9.80082 -9.69626 -1.32973 -0.26257 0.13470 0.32932 1.14427 1.21015 1.40604 1.49335 1.57549 1.91153 1.94136 1.94742 1.99843 2.03710 2.20580 2.75905 3.06484 3.09551 3.31009 3.39009 3.58657 3.65999 3.74952 3.86915 3.91355 3.95194 4.13615 4.20463 4.27381 4.32851 4.36221 4.43715 4.49762 4.57430 4.58843 4.71869 4.75891 4.76385 4.81401 4.87838 4.90745 4.96289 5.01814 5.05524 5.05750 5.17892 5.35205 5.40167 5.51669 5.54641 5.62999 5.72609 5.79347 6.20711 6.42133 6.78414 7.05634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.454 4.454 2 Si 1.072 2.928 3 C -0.474 4.474 4 C -0.399 4.399 5 C -0.121 4.121 6 C 0.084 3.916 7 N -0.587 5.587 8 C 0.500 3.500 9 O -0.562 6.562 10 C 0.021 3.979 11 O -0.290 6.290 12 C 0.191 3.809 13 C -0.190 4.190 14 C -0.019 4.019 15 C -0.114 4.114 16 C -0.091 4.091 17 O -0.566 6.566 18 Si 0.982 3.018 19 H -0.241 1.241 20 H -0.259 1.259 21 H -0.251 1.251 22 C 0.001 3.999 23 C -0.103 4.103 24 N 0.035 4.965 25 O -0.192 6.192 26 O -0.180 6.180 27 C 0.129 3.871 28 C -0.469 4.469 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.073 0.927 39 H 0.092 0.908 40 H 0.101 0.899 41 H 0.140 0.860 42 H 0.143 0.857 43 H 0.203 0.797 44 H 0.175 0.825 45 H 0.098 0.902 46 H 0.402 0.598 47 H 0.159 0.841 48 H 0.113 0.887 49 H 0.053 0.947 50 H 0.076 0.924 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.203 -4.392 15.462 17.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.562 4.562 2 Si 1.263 2.737 3 C -0.579 4.579 4 C -0.486 4.486 5 C -0.159 4.159 6 C -0.037 4.037 7 N -0.321 5.321 8 C 0.287 3.713 9 O -0.439 6.439 10 C -0.056 4.056 11 O -0.200 6.200 12 C 0.141 3.859 13 C -0.209 4.209 14 C -0.036 4.036 15 C -0.115 4.115 16 C -0.199 4.199 17 O -0.376 6.376 18 Si 0.803 3.197 19 H -0.164 1.164 20 H -0.183 1.183 21 H -0.175 1.175 22 C -0.018 4.018 23 C -0.189 4.189 24 N 0.546 4.454 25 O -0.402 6.402 26 O -0.392 6.392 27 C 0.005 3.995 28 C -0.552 4.552 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.120 0.880 38 H 0.092 0.908 39 H 0.110 0.890 40 H 0.119 0.881 41 H 0.157 0.843 42 H 0.161 0.839 43 H 0.220 0.780 44 H 0.192 0.808 45 H 0.116 0.884 46 H 0.253 0.747 47 H 0.177 0.823 48 H 0.131 0.869 49 H 0.072 0.928 50 H 0.094 0.906 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.855 -4.168 15.700 17.631 hybrid contribution 1.102 0.353 -1.668 2.030 sum -5.753 -3.815 14.033 15.638 Atomic orbital electron populations 1.26251 1.20404 1.04995 1.04503 0.77992 0.66456 0.64157 0.65138 1.26437 1.05720 1.21497 1.04227 1.25563 1.04762 1.03570 1.14732 1.21083 1.00164 0.93418 1.01221 1.22345 1.03159 0.99171 0.79005 1.47158 1.14879 1.56185 1.13848 1.20544 0.82909 0.79936 0.87930 1.90833 1.74124 1.56874 1.22088 1.23279 0.83071 1.03580 0.95623 1.86481 1.25632 1.68356 1.39580 1.18943 0.86261 0.89073 0.91590 1.21720 1.04584 1.04290 0.90272 1.21688 0.90822 0.90220 1.00920 1.19526 0.96663 1.02841 0.92467 1.24979 0.89194 0.95679 1.10059 1.86462 1.27552 1.44288 1.79307 0.85241 0.80671 0.80125 0.73679 1.16406 1.18309 1.17492 1.20891 0.97080 0.90186 0.93603 1.20864 0.99139 1.16507 0.82361 1.43848 0.99675 0.98113 1.03808 1.94487 1.13867 1.58558 1.73292 1.94690 1.41198 1.39754 1.63528 1.20735 0.95319 0.90218 0.93209 1.27092 1.05788 1.03280 1.18993 0.90705 0.91845 0.90131 0.92424 0.92177 0.90735 0.91080 0.89163 0.88014 0.90839 0.88965 0.88106 0.84307 0.83949 0.77969 0.80790 0.88394 0.74671 0.82325 0.86913 0.92837 0.90551 0.92826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 2.97 8.35 113.37 0.95 3.92 16 2 Si 1.07 -6.53 10.48 68.60 0.72 -5.82 16 3 C -0.47 0.53 8.65 113.37 0.98 1.51 16 4 C -0.40 3.75 4.83 70.98 0.34 4.09 16 5 C -0.12 1.56 5.32 30.04 0.16 1.72 16 6 C 0.08 -1.03 5.83 86.71 0.51 -0.52 16 7 N -0.59 1.62 2.45 -822.72 -2.01 -0.40 16 8 C 0.50 2.22 7.27 87.66 0.64 2.86 16 9 O -0.56 -10.01 15.71 15.99 0.25 -9.76 16 10 C 0.02 -0.08 3.50 71.24 0.25 0.17 16 11 O -0.29 -2.13 7.68 -63.41 -0.49 -2.62 16 12 C 0.19 0.65 6.67 22.51 0.15 0.80 16 13 C -0.19 1.37 9.04 22.37 0.20 1.57 16 14 C -0.02 0.14 8.66 22.26 0.19 0.33 16 15 C -0.11 0.31 5.38 -19.85 -0.11 0.20 16 16 C -0.09 0.61 2.79 71.24 0.20 0.81 16 17 O -0.57 2.33 12.81 -148.98 -1.91 0.42 16 18 Si 0.98 -9.35 25.13 68.60 1.72 -7.62 16 19 H -0.24 2.44 7.11 99.48 0.71 3.15 16 20 H -0.26 1.98 7.11 99.48 0.71 2.69 16 21 H -0.25 2.09 7.04 99.48 0.70 2.79 16 22 C 0.00 0.01 9.19 22.25 0.20 0.21 16 23 C -0.10 -0.94 6.87 36.48 0.25 -0.69 16 24 N 0.03 0.63 4.45 -46.24 -0.21 0.43 16 25 O -0.19 -3.67 18.45 18.88 0.35 -3.33 16 26 O -0.18 -4.22 17.24 25.61 0.44 -3.78 16 27 C 0.13 -0.03 5.36 87.73 0.47 0.44 16 28 C -0.47 -0.37 4.47 72.65 0.32 -0.04 16 29 H 0.07 -0.52 7.96 -2.39 -0.02 -0.54 16 30 H 0.06 -0.29 7.96 -2.38 -0.02 -0.31 16 31 H 0.08 -0.69 6.53 -2.39 -0.02 -0.71 16 32 H 0.06 0.05 7.96 -2.39 -0.02 0.03 16 33 H 0.06 0.02 7.96 -2.39 -0.02 0.00 16 34 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 35 H 0.07 -0.57 7.90 -2.39 -0.02 -0.59 16 36 H 0.09 -0.96 7.99 -2.39 -0.02 -0.97 16 37 H 0.10 -1.64 8.14 -2.38 -0.02 -1.66 16 38 H 0.07 -1.00 5.94 -2.39 -0.01 -1.01 16 39 H 0.09 -1.42 8.14 -2.39 -0.02 -1.44 16 40 H 0.10 -1.77 5.49 -2.39 -0.01 -1.78 16 41 H 0.14 -1.67 6.95 -2.38 -0.02 -1.69 16 42 H 0.14 -1.82 7.47 -2.39 -0.02 -1.84 16 43 H 0.20 -3.53 6.30 -2.91 -0.02 -3.55 16 44 H 0.18 -2.38 4.86 -2.91 -0.01 -2.39 16 45 H 0.10 -0.97 7.96 -2.39 -0.02 -0.99 16 46 H 0.40 -5.14 8.74 -74.05 -0.65 -5.79 16 47 H 0.16 0.59 7.61 -2.91 -0.02 0.56 16 48 H 0.11 -0.76 7.14 -2.39 -0.02 -0.78 16 49 H 0.05 0.33 7.46 -2.39 -0.02 0.31 16 50 H 0.08 0.13 7.89 -2.39 -0.02 0.11 16 51 H 0.05 0.37 7.28 -2.39 -0.02 0.35 16 Total: 0.00 -36.97 407.46 5.65 -31.32 By element: Atomic # 1 Polarization: -17.32 SS G_CDS: 1.07 Total: -16.24 kcal Atomic # 6 Polarization: 11.68 SS G_CDS: 5.71 Total: 17.39 kcal Atomic # 7 Polarization: 2.25 SS G_CDS: -2.22 Total: 0.03 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -1.35 Total: -19.06 kcal Atomic # 14 Polarization: -15.88 SS G_CDS: 2.44 Total: -13.44 kcal Total: -36.97 5.65 -31.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915400_4549638.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.218 kcal (2) G-P(sol) polarization free energy of solvation -36.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds