Wall clock time and date at job start Thu Mar 4 2021 18:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86299 * 108.82214 * 2 1 4 4 C 1.84159 * 108.84635 * 118.48395 * 2 1 3 5 5 C 1.55339 * 109.12813 * 207.39100 * 4 2 1 6 6 C 1.45973 * 108.92228 * 290.55601 * 5 4 2 7 7 N 1.46268 * 114.58417 * 60.35487 * 6 5 4 8 8 C 1.34777 * 122.82410 * 79.19069 * 7 6 5 9 9 O 1.21691 * 120.00064 * 183.80593 * 8 7 6 10 10 C 1.46683 * 119.99312 * 3.80725 * 8 7 6 11 11 C 1.37872 * 126.22813 * 172.05320 * 10 8 7 12 12 C 1.39828 * 107.08728 * 180.02562 * 11 10 8 13 13 C 1.35457 * 107.86475 * 359.76097 * 12 11 10 14 14 C 1.50698 * 125.56701 * 180.23757 * 13 12 11 15 15 O 1.42903 * 109.47023 * 120.18085 * 14 13 12 16 16 Si 1.86293 * 109.47304 * 0.18253 * 14 13 12 17 17 H 1.48509 * 109.47203 * 59.99673 * 16 14 13 18 18 H 1.48501 * 109.47316 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47096 * 300.00034 * 16 14 13 20 20 N 1.35536 * 108.86850 * 0.39571 * 13 12 11 21 21 C 1.44483 * 114.35557 * 259.46295 * 7 6 5 22 22 C 1.56288 * 107.52453 * 111.11761 * 21 7 6 23 23 H 1.09001 * 109.46714 * 301.51646 * 1 2 3 24 24 H 1.08999 * 109.46819 * 61.51679 * 1 2 3 25 25 H 1.08995 * 109.47161 * 181.51821 * 1 2 3 26 26 H 1.08999 * 109.47679 * 158.00271 * 3 2 1 27 27 H 1.08996 * 109.47348 * 278.01089 * 3 2 1 28 28 H 1.09007 * 109.46762 * 38.00571 * 3 2 1 29 29 H 1.09000 * 109.52752 * 87.49480 * 4 2 1 30 30 H 1.09002 * 109.58590 * 327.32223 * 4 2 1 31 31 H 1.08993 * 109.56359 * 170.71614 * 5 4 2 32 32 H 1.09003 * 109.64932 * 50.43855 * 5 4 2 33 33 H 1.09003 * 108.46016 * 299.03235 * 6 5 4 34 34 H 1.09001 * 108.33158 * 181.58156 * 6 5 4 35 35 H 1.08003 * 126.45725 * 0.03789 * 11 10 8 36 36 H 1.07997 * 126.07600 * 179.97438 * 12 11 10 37 37 H 1.09004 * 109.47404 * 240.17627 * 14 13 12 38 38 H 0.96699 * 114.00126 * 300.00019 * 15 14 13 39 39 H 0.96998 * 125.67824 * 179.87304 * 20 13 12 40 40 H 1.09005 * 109.89550 * 230.31895 * 21 7 6 41 41 H 1.08997 * 109.90153 * 351.44269 * 21 7 6 42 42 H 1.09008 * 110.09839 * 204.82435 * 22 21 7 43 43 H 1.08997 * 110.23646 * 83.21833 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4641 1.7634 0.0000 4 6 2.4579 -0.8312 1.5319 5 6 3.8556 -0.2667 1.9073 6 6 4.8299 -0.7194 0.9191 7 7 4.5519 -0.2892 -0.4509 8 6 4.8375 0.9490 -0.9001 9 8 4.5213 1.2746 -2.0292 10 6 5.5294 1.9039 -0.0279 11 6 6.0189 3.1386 -0.3977 12 6 6.5993 3.7081 0.7399 13 6 6.4527 2.8331 1.7634 14 6 6.9307 3.0487 3.1762 15 8 5.8161 2.9982 4.0691 16 14 7.7548 4.7144 3.3056 17 1 6.7825 5.7772 2.9443 18 1 8.2253 4.9272 4.6980 19 1 8.9130 4.7670 2.3777 20 7 5.8090 1.7304 1.3087 21 6 3.9396 -1.3013 -1.2806 22 6 2.4721 -0.8482 -1.5699 23 1 -0.3633 0.5372 0.8761 24 1 -0.3633 0.4901 -0.9033 25 1 -0.3633 -1.0273 0.0272 26 1 3.4832 1.8000 0.3849 27 1 2.4457 2.1535 -1.0176 28 1 1.8148 2.3685 0.6328 29 1 2.5331 -1.9046 1.3582 30 1 1.7579 -0.6419 2.3457 31 1 4.1420 -0.6285 2.8947 32 1 3.8212 0.8227 1.9136 33 1 4.8613 -1.8087 0.9392 34 1 5.8110 -0.3417 1.2071 35 1 5.9642 3.5825 -1.3808 36 1 7.0764 4.6754 0.7939 37 1 7.6443 2.2686 3.4415 38 1 5.1394 3.6658 3.8918 39 1 5.5796 0.9506 1.8380 40 1 4.4858 -1.3916 -2.2196 41 1 3.9375 -2.2580 -0.7582 42 1 1.8495 -1.7149 -1.7926 43 1 2.4513 -0.1485 -2.4054 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915400_6580494.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 18:47:33 Heat of formation + Delta-G solvation = -18.134889 kcal Electronic energy + Delta-G solvation = -24050.071183 eV Core-core repulsion = 20835.223491 eV Total energy + Delta-G solvation = -3214.847692 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 296.147 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.04047 -40.82705 -38.21420 -37.67090 -34.40886 -32.45259 -31.78462 -30.64157 -29.36511 -28.46842 -27.36537 -26.62115 -24.66801 -22.76634 -22.33294 -21.50154 -20.67776 -19.01838 -18.12435 -17.51102 -16.86256 -16.54156 -16.27716 -15.92065 -15.52047 -15.29156 -14.91520 -14.73837 -14.48775 -14.47108 -14.12058 -13.92459 -13.83641 -13.72397 -13.68545 -13.43713 -13.24789 -13.04379 -12.71909 -12.42366 -12.31320 -12.28222 -12.08674 -11.83210 -11.79493 -11.23626 -10.80328 -10.64413 -10.53492 -10.46042 -10.10273 -9.87989 -9.22739 0.29773 1.10450 1.48545 1.56854 1.62004 1.70470 1.83557 1.88305 1.95709 1.99560 2.20761 2.25464 2.70348 3.40477 3.48071 3.61754 3.63089 4.00184 4.17909 4.20854 4.30217 4.32772 4.35889 4.49516 4.55631 4.66548 4.67815 4.69890 4.73757 4.75673 4.83585 4.84710 4.92822 4.95757 5.04043 5.11886 5.32122 5.38500 5.45070 5.50624 5.56752 5.61118 5.77620 6.22794 6.35917 6.59911 6.98758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.463 4.463 2 Si 1.045 2.955 3 C -0.483 4.483 4 C -0.397 4.397 5 C -0.156 4.156 6 C 0.072 3.928 7 N -0.611 5.611 8 C 0.603 3.397 9 O -0.558 6.558 10 C -0.058 4.058 11 C -0.126 4.126 12 C -0.216 4.216 13 C 0.023 3.977 14 C -0.061 4.061 15 O -0.549 6.549 16 Si 1.006 2.994 17 H -0.257 1.257 18 H -0.267 1.267 19 H -0.258 1.258 20 N -0.519 5.519 21 C 0.116 3.884 22 C -0.436 4.436 23 H 0.068 0.932 24 H 0.055 0.945 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.043 0.957 28 H 0.060 0.940 29 H 0.103 0.897 30 H 0.091 0.909 31 H 0.117 0.883 32 H 0.062 0.938 33 H 0.130 0.870 34 H 0.073 0.927 35 H 0.140 0.860 36 H 0.156 0.844 37 H 0.138 0.862 38 H 0.392 0.608 39 H 0.433 0.567 40 H 0.057 0.943 41 H 0.129 0.871 42 H 0.095 0.905 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.983 -4.143 6.466 7.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.236 2.764 3 C -0.587 4.587 4 C -0.485 4.485 5 C -0.194 4.194 6 C -0.050 4.050 7 N -0.344 5.344 8 C 0.394 3.606 9 O -0.436 6.436 10 C -0.172 4.172 11 C -0.152 4.152 12 C -0.240 4.240 13 C -0.096 4.096 14 C -0.171 4.171 15 O -0.355 6.355 16 Si 0.829 3.171 17 H -0.181 1.181 18 H -0.192 1.192 19 H -0.182 1.182 20 N -0.125 5.125 21 C -0.006 4.006 22 C -0.521 4.521 23 H 0.087 0.913 24 H 0.074 0.926 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.122 0.878 30 H 0.109 0.891 31 H 0.135 0.865 32 H 0.080 0.920 33 H 0.148 0.852 34 H 0.091 0.909 35 H 0.158 0.842 36 H 0.173 0.827 37 H 0.156 0.844 38 H 0.241 0.759 39 H 0.284 0.716 40 H 0.075 0.925 41 H 0.147 0.853 42 H 0.113 0.887 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.520 -3.837 6.221 7.466 hybrid contribution -0.787 0.290 -0.799 1.158 sum 0.733 -3.547 5.422 6.521 Atomic orbital electron populations 1.26327 1.22171 1.04651 1.03787 0.78650 0.65482 0.65094 0.67180 1.27263 1.06273 1.22239 1.02881 1.26119 1.00161 1.08103 1.14133 1.21148 0.96035 1.01554 1.00695 1.20903 0.98623 1.04599 0.80909 1.47538 1.61714 1.11737 1.13384 1.16860 0.77367 0.80928 0.85410 1.90839 1.54544 1.77518 1.20729 1.20284 1.12487 0.99277 0.85123 1.21407 1.00561 0.93364 0.99916 1.20891 1.08866 1.01825 0.92432 1.21459 1.01962 0.88792 0.97397 1.24909 0.93924 1.15296 0.82960 1.86479 1.33362 1.61003 1.54687 0.84831 0.79279 0.73468 0.79567 1.18055 1.19194 1.18194 1.43205 1.44043 1.17267 1.08033 1.21699 0.92269 0.91005 0.95588 1.27590 1.00602 1.07995 1.15913 0.91322 0.92590 0.90392 0.90517 0.93719 0.92053 0.87830 0.89071 0.86468 0.92000 0.85174 0.90884 0.84184 0.82701 0.84440 0.75876 0.71649 0.92483 0.85324 0.88674 0.92639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 -0.02 8.65 113.37 0.98 0.96 16 2 Si 1.04 -2.10 9.98 68.60 0.68 -1.41 16 3 C -0.48 -2.58 6.83 113.37 0.77 -1.80 16 4 C -0.40 3.09 4.72 72.79 0.34 3.44 16 5 C -0.16 1.30 4.43 29.24 0.13 1.43 16 6 C 0.07 -0.55 4.43 84.27 0.37 -0.18 16 7 N -0.61 0.11 1.62 -838.06 -1.36 -1.24 16 8 C 0.60 4.61 4.15 86.45 0.36 4.96 16 9 O -0.56 -8.78 15.32 -4.32 -0.07 -8.85 16 10 C -0.06 -0.33 4.87 40.35 0.20 -0.13 16 11 C -0.13 -0.90 10.66 22.57 0.24 -0.66 16 12 C -0.22 -0.56 9.32 22.01 0.21 -0.36 16 13 C 0.02 -0.01 6.47 41.34 0.27 0.25 16 14 C -0.06 0.30 3.08 71.24 0.22 0.52 16 15 O -0.55 2.58 12.88 -148.98 -1.92 0.66 16 16 Si 1.01 -3.93 25.82 68.60 1.77 -2.15 16 17 H -0.26 0.63 7.11 99.48 0.71 1.33 16 18 H -0.27 0.36 7.11 99.48 0.71 1.06 16 19 H -0.26 0.51 7.11 99.48 0.71 1.22 16 20 N -0.52 0.25 4.34 -171.93 -0.75 -0.50 16 21 C 0.12 -0.18 5.73 87.90 0.50 0.33 16 22 C -0.44 -0.33 5.02 73.13 0.37 0.03 16 23 H 0.07 -0.01 7.96 -2.39 -0.02 -0.03 16 24 H 0.05 0.15 7.96 -2.39 -0.02 0.13 16 25 H 0.08 -0.15 7.96 -2.39 -0.02 -0.17 16 26 H 0.08 0.35 2.04 -2.39 0.00 0.35 16 27 H 0.04 0.51 7.25 -2.39 -0.02 0.49 16 28 H 0.06 0.28 7.96 -2.38 -0.02 0.26 16 29 H 0.10 -1.18 7.90 -2.39 -0.02 -1.20 16 30 H 0.09 -0.75 7.95 -2.39 -0.02 -0.77 16 31 H 0.12 -1.47 8.14 -2.39 -0.02 -1.49 16 32 H 0.06 -0.31 4.35 -2.39 -0.01 -0.32 16 33 H 0.13 -1.75 7.17 -2.39 -0.02 -1.77 16 34 H 0.07 -0.60 5.43 -2.39 -0.01 -0.61 16 35 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16 36 H 0.16 -0.08 6.17 -2.91 -0.02 -0.10 16 37 H 0.14 -1.15 7.96 -2.38 -0.02 -1.17 16 38 H 0.39 -3.74 8.70 -74.06 -0.64 -4.38 16 39 H 0.43 -2.23 3.57 -92.71 -0.33 -2.56 16 40 H 0.06 0.13 8.14 -2.38 -0.02 0.11 16 41 H 0.13 -1.24 7.17 -2.39 -0.02 -1.25 16 42 H 0.09 -0.26 8.00 -2.38 -0.02 -0.28 16 43 H 0.05 0.43 7.47 -2.39 -0.02 0.41 16 Total: 0.00 -18.45 316.99 4.14 -14.30 By element: Atomic # 1 Polarization: -10.42 SS G_CDS: 0.82 Total: -9.61 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: 4.96 Total: 8.80 kcal Atomic # 7 Polarization: 0.36 SS G_CDS: -2.10 Total: -1.74 kcal Atomic # 8 Polarization: -6.20 SS G_CDS: -1.99 Total: -8.19 kcal Atomic # 14 Polarization: -6.03 SS G_CDS: 2.46 Total: -3.57 kcal Total: -18.45 4.14 -14.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915400_6580494.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.833 kcal (2) G-P(sol) polarization free energy of solvation -18.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds