Wall clock time and date at job start Thu Mar 4 2021 18:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33818 * 122.44972 * 2 1 4 4 C 1.50703 * 124.51997 * 359.97438 * 3 2 1 5 5 O 1.42894 * 109.47366 * 29.99533 * 4 3 2 6 6 Si 1.86294 * 109.47006 * 149.99946 * 4 3 2 7 7 H 1.48506 * 109.47280 * 59.99787 * 6 4 3 8 8 H 1.48493 * 109.47359 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47305 * 299.99958 * 6 4 3 10 10 S 1.70616 * 110.95248 * 179.73957 * 3 2 1 11 11 C 1.75829 * 91.56569 * 0.30785 * 10 3 2 12 12 C 1.46585 * 125.45846 * 179.97438 * 11 10 3 13 13 O 1.21705 * 119.99772 * 185.50475 * 12 11 10 14 14 N 1.34768 * 119.99681 * 5.50471 * 12 11 10 15 15 C 1.45043 * 120.98938 * 355.51851 * 14 12 11 16 16 C 1.52527 * 107.75561 * 285.04515 * 15 14 12 17 17 C 1.46935 * 114.66054 * 268.14242 * 16 15 14 18 18 Si 1.88881 * 108.02531 * 62.65951 * 17 16 15 19 19 C 1.86292 * 109.60595 * 55.38126 * 18 17 16 20 20 C 1.86299 * 109.60604 * 175.71632 * 18 17 16 21 21 C 1.85390 * 108.65203 * 295.62850 * 18 17 16 22 22 C 1.47155 * 120.84974 * 175.54244 * 14 12 11 23 23 C 1.36654 * 109.08074 * 359.69546 * 11 10 3 24 24 H 1.09002 * 109.46975 * 269.99618 * 1 2 3 25 25 H 1.08997 * 109.47122 * 30.00227 * 1 2 3 26 26 H 1.09002 * 109.47165 * 149.99815 * 1 2 3 27 27 H 1.09003 * 109.46563 * 269.99897 * 4 3 2 28 28 H 0.96706 * 113.99737 * 59.99875 * 5 4 3 29 29 H 1.09004 * 109.94384 * 165.42388 * 15 14 12 30 30 H 1.09001 * 109.72748 * 44.53964 * 15 14 12 31 31 H 1.08998 * 108.41659 * 146.84909 * 16 15 14 32 32 H 1.08995 * 108.41542 * 29.43093 * 16 15 14 33 33 H 1.09003 * 109.74934 * 182.28705 * 17 16 15 34 34 H 1.08994 * 109.75570 * 302.97420 * 17 16 15 35 35 H 1.08997 * 109.47303 * 60.00131 * 19 18 17 36 36 H 1.09003 * 109.46939 * 180.02562 * 19 18 17 37 37 H 1.09000 * 109.47659 * 299.99882 * 19 18 17 38 38 H 1.08998 * 109.47626 * 59.99492 * 20 18 17 39 39 H 1.09004 * 109.47190 * 180.02562 * 20 18 17 40 40 H 1.09004 * 109.47161 * 299.99454 * 20 18 17 41 41 H 1.08997 * 108.89052 * 200.88561 * 21 18 17 42 42 H 1.09000 * 108.89192 * 319.36618 * 21 18 17 43 43 H 1.09005 * 108.59040 * 18.88916 * 22 14 12 44 44 H 1.08990 * 108.48227 * 261.09988 * 22 14 12 45 45 H 1.07998 * 123.34884 * 180.24396 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2251 1.1292 0.0000 4 6 1.6355 2.5162 -0.0006 5 8 0.3751 2.4983 0.6725 6 14 2.7921 3.6829 0.8778 7 1 4.1020 3.7015 0.1783 8 1 2.2115 5.0496 0.8768 9 1 2.9852 3.2277 2.2781 10 16 3.8970 0.7892 0.0072 11 6 3.5938 -0.9428 0.0009 12 6 4.6232 -1.9863 0.0024 13 8 4.3041 -3.1560 -0.1035 14 7 5.9229 -1.6504 0.1212 15 6 6.3352 -0.2601 0.1518 16 6 6.2371 0.2856 -1.2691 17 6 7.4735 0.1744 -2.0552 18 14 7.8825 -1.6598 -2.2449 19 6 6.4284 -2.5502 -2.9954 20 6 9.3726 -1.8575 -3.3455 21 6 8.2448 -2.3630 -0.5682 22 6 6.9637 -2.6858 0.2228 23 6 2.2446 -1.1601 0.0005 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3633 -0.8900 -0.5139 27 1 1.4938 2.8502 -1.0284 28 1 0.4255 2.2100 1.5942 29 1 7.3634 -0.1849 0.5058 30 1 5.6754 0.3049 0.8103 31 1 5.9564 1.3374 -1.2154 32 1 5.4472 -0.2540 -1.7914 33 1 7.3267 0.6225 -3.0380 34 1 8.2867 0.6821 -1.5367 35 1 6.2081 -2.1252 -3.9746 36 1 6.6666 -3.6084 -3.1034 37 1 5.5595 -2.4382 -2.3469 38 1 10.2234 -1.3407 -2.9015 39 1 9.6064 -2.9166 -3.4538 40 1 9.1595 -1.4308 -4.3257 41 1 8.8260 -3.2774 -0.6871 42 1 8.8360 -1.6422 -0.0034 43 1 6.5551 -3.6266 -0.1462 44 1 7.2259 -2.8101 1.2734 45 1 1.8019 -2.1452 0.0008 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915400_6739946.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 18:47:59 Heat of formation + Delta-G solvation = -61.802239 kcal Electronic energy + Delta-G solvation = -25153.768684 eV Core-core repulsion = 21807.841831 eV Total energy + Delta-G solvation = -3345.926852 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.124 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.39469 -39.93767 -38.00664 -37.22487 -34.35415 -32.63995 -31.21370 -30.16072 -29.13954 -28.42288 -27.39454 -26.58895 -24.64279 -23.11441 -22.66441 -20.59764 -20.05570 -19.06492 -18.02504 -17.32017 -17.10161 -16.83986 -16.30332 -15.99401 -15.61569 -15.42446 -15.15636 -14.92263 -14.48962 -14.35685 -14.17224 -14.00051 -13.87568 -13.83387 -13.57152 -13.35601 -13.26956 -13.17223 -13.11388 -13.08874 -12.83320 -12.53672 -12.38207 -12.24289 -12.14486 -12.05632 -11.78099 -11.43536 -11.21589 -10.81104 -10.64011 -10.61175 -10.24452 -9.87301 -9.51245 -9.24328 -0.63722 0.33072 0.81352 1.03523 1.31476 1.40637 1.46872 1.72928 1.85488 1.89811 1.90480 1.96705 2.08108 2.66437 3.38769 3.43234 3.70959 3.75972 3.98127 4.09843 4.15501 4.32284 4.33707 4.36139 4.56525 4.59950 4.63065 4.67789 4.69812 4.77097 4.78791 4.82977 4.84546 4.87863 4.91264 4.98153 5.01616 5.04107 5.19916 5.31627 5.44554 5.46745 5.50290 5.51074 5.60734 5.61629 6.20488 6.61618 6.92821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.107 4.107 3 C -0.270 4.270 4 C -0.040 4.040 5 O -0.540 6.540 6 Si 0.924 3.076 7 H -0.220 1.220 8 H -0.245 1.245 9 H -0.247 1.247 10 S 0.270 5.730 11 C -0.292 4.292 12 C 0.590 3.410 13 O -0.572 6.572 14 N -0.601 5.601 15 C 0.077 3.923 16 C -0.146 4.146 17 C -0.391 4.391 18 Si 1.041 2.959 19 C -0.471 4.471 20 C -0.454 4.454 21 C -0.426 4.426 22 C 0.120 3.880 23 C -0.058 4.058 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.056 0.944 27 H 0.134 0.866 28 H 0.388 0.612 29 H 0.137 0.863 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.054 0.946 33 H 0.087 0.913 34 H 0.102 0.898 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.046 0.954 38 H 0.080 0.920 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.099 0.901 42 H 0.104 0.896 43 H 0.064 0.936 44 H 0.072 0.928 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.839 6.180 1.064 7.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C -0.388 4.388 4 C -0.152 4.152 5 O -0.347 6.347 6 Si 0.744 3.256 7 H -0.143 1.143 8 H -0.169 1.169 9 H -0.170 1.170 10 S 0.541 5.459 11 C -0.412 4.412 12 C 0.379 3.621 13 O -0.454 6.454 14 N -0.333 5.333 15 C -0.047 4.047 16 C -0.185 4.185 17 C -0.478 4.478 18 Si 1.233 2.767 19 C -0.574 4.574 20 C -0.562 4.562 21 C -0.511 4.511 22 C -0.001 4.001 23 C -0.093 4.093 24 H 0.096 0.904 25 H 0.102 0.898 26 H 0.075 0.925 27 H 0.152 0.848 28 H 0.237 0.763 29 H 0.155 0.845 30 H 0.103 0.897 31 H 0.110 0.890 32 H 0.072 0.928 33 H 0.106 0.894 34 H 0.121 0.879 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.118 0.882 42 H 0.123 0.877 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 6.299 7.231 0.892 9.631 hybrid contribution -1.939 -2.106 0.142 2.866 sum 4.361 5.125 1.034 6.808 Atomic orbital electron populations 1.20609 0.88393 1.02933 1.03079 1.18684 0.98733 0.90344 1.04114 1.25554 1.02799 1.01161 1.09298 1.24537 0.92287 0.94397 1.04009 1.86505 1.28147 1.90056 1.30012 0.85960 0.78918 0.79767 0.80953 1.14315 1.16861 1.16996 1.83468 0.98958 0.95933 1.67502 1.24558 0.97639 0.98400 1.20566 1.17147 0.82189 0.86978 0.75755 1.90811 1.81958 1.20418 1.52219 1.47780 1.05182 1.08614 1.71697 1.22048 1.04428 0.80147 0.98049 1.20745 0.99754 1.03106 0.94881 1.25045 1.00701 1.18524 1.03489 0.78885 0.64588 0.67579 0.65626 1.26588 1.15916 1.08132 1.06794 1.26155 1.15215 1.04542 1.10241 1.26568 0.98830 1.09175 1.16569 1.21281 0.87480 0.90416 1.00960 1.20749 0.91468 1.00166 0.96901 0.90409 0.89806 0.92540 0.84826 0.76254 0.84505 0.89698 0.89031 0.92780 0.89403 0.87908 0.91884 0.92540 0.93423 0.90052 0.91737 0.91320 0.88232 0.87711 0.91775 0.90980 0.84246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.08 8.67 71.24 0.62 0.54 16 2 C -0.11 -0.34 5.75 -21.05 -0.12 -0.46 16 3 C -0.27 -0.06 5.54 24.68 0.14 0.08 16 4 C -0.04 0.12 2.76 71.24 0.20 0.32 16 5 O -0.54 1.23 9.85 -148.98 -1.47 -0.23 16 6 Si 0.92 -3.82 26.59 68.60 1.82 -2.00 16 7 H -0.22 1.31 7.10 99.48 0.71 2.02 16 8 H -0.25 0.35 7.11 99.48 0.71 1.06 16 9 H -0.25 0.72 7.11 99.48 0.71 1.43 16 10 S 0.27 -0.26 12.93 -56.49 -0.73 -0.99 16 11 C -0.29 -1.78 5.88 24.08 0.14 -1.63 16 12 C 0.59 5.39 5.80 86.42 0.50 5.90 16 13 O -0.57 -9.96 16.27 -4.36 -0.07 -10.03 16 14 N -0.60 -1.19 1.85 -827.60 -1.53 -2.72 16 15 C 0.08 -0.36 4.91 86.50 0.42 0.07 16 16 C -0.15 0.71 3.22 28.55 0.09 0.80 16 17 C -0.39 2.90 4.77 70.10 0.33 3.24 16 18 Si 1.04 -5.40 10.48 68.60 0.72 -4.69 16 19 C -0.47 -1.62 8.41 113.37 0.95 -0.67 16 20 C -0.45 1.96 8.65 113.37 0.98 2.95 16 21 C -0.43 2.39 4.36 72.31 0.32 2.71 16 22 C 0.12 0.06 5.75 86.59 0.50 0.56 16 23 C -0.06 -0.40 9.80 21.72 0.21 -0.18 16 24 H 0.08 -0.10 8.14 -2.39 -0.02 -0.12 16 25 H 0.08 0.10 6.41 -2.39 -0.02 0.09 16 26 H 0.06 0.08 8.13 -2.39 -0.02 0.06 16 27 H 0.13 -0.65 7.96 -2.39 -0.02 -0.67 16 28 H 0.39 -2.91 8.66 -74.05 -0.64 -3.55 16 29 H 0.14 -1.42 6.71 -2.38 -0.02 -1.44 16 30 H 0.09 -0.46 4.90 -19.47 -0.10 -0.56 16 31 H 0.09 -0.69 7.04 -2.39 -0.02 -0.71 16 32 H 0.05 -0.03 5.52 -2.39 -0.01 -0.04 16 33 H 0.09 -0.66 8.00 -2.39 -0.02 -0.68 16 34 H 0.10 -1.16 8.00 -2.39 -0.02 -1.18 16 35 H 0.06 0.19 7.96 -2.39 -0.02 0.17 16 36 H 0.06 0.28 7.96 -2.39 -0.02 0.26 16 37 H 0.05 0.39 5.76 -2.39 -0.01 0.38 16 38 H 0.08 -0.50 7.96 -2.39 -0.02 -0.52 16 39 H 0.06 -0.19 7.96 -2.39 -0.02 -0.21 16 40 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 41 H 0.10 -0.63 7.93 -2.39 -0.02 -0.65 16 42 H 0.10 -1.05 7.30 -2.39 -0.02 -1.07 16 43 H 0.06 0.38 7.11 -2.38 -0.02 0.36 16 44 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 45 H 0.14 1.16 8.06 -2.91 -0.02 1.13 16 Total: 0.00 -16.32 347.13 5.05 -11.26 By element: Atomic # 1 Polarization: -5.83 SS G_CDS: 1.02 Total: -4.81 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: 5.28 Total: 14.20 kcal Atomic # 7 Polarization: -1.19 SS G_CDS: -1.53 Total: -2.72 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: -1.54 Total: -10.27 kcal Atomic # 14 Polarization: -9.23 SS G_CDS: 2.54 Total: -6.69 kcal Atomic # 16 Polarization: -0.26 SS G_CDS: -0.73 Total: -0.99 kcal Total: -16.32 5.05 -11.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915400_6739946.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.538 kcal (2) G-P(sol) polarization free energy of solvation -16.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds