Wall clock time and date at job start Thu Mar 4 2021 18:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86294 * 109.00854 * 2 1 4 4 C 1.86974 * 109.02205 * 241.16627 * 2 1 3 5 5 C 1.54212 * 109.29036 * 199.06616 * 4 2 1 6 6 C 1.52377 * 108.06666 * 321.63857 * 5 4 2 7 7 N 1.45480 * 105.90290 * 102.24047 * 6 5 4 8 8 C 1.34773 * 116.96793 * 80.90818 * 7 6 5 9 9 O 1.21636 * 119.99991 * 355.51754 * 8 7 6 10 10 C 1.47187 * 120.00195 * 175.50856 * 8 7 6 11 11 C 1.36012 * 123.46284 * 228.70508 * 10 8 7 12 12 S 1.70443 * 110.81648 * 179.89176 * 11 10 8 13 13 C 1.75509 * 92.44675 * 0.31731 * 12 11 10 14 14 C 1.50701 * 124.71298 * 179.85693 * 13 12 11 15 15 O 1.42904 * 109.46972 * 119.95723 * 14 13 12 16 16 Si 1.86297 * 109.47184 * 359.95650 * 14 13 12 17 17 H 1.48501 * 109.47239 * 60.00062 * 16 14 13 18 18 H 1.48499 * 109.47463 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47328 * 300.00232 * 16 14 13 20 20 C 1.32769 * 110.57624 * 359.81688 * 13 12 11 21 21 C 1.42432 * 126.06600 * 260.89437 * 7 6 5 22 22 C 1.55255 * 107.47815 * 64.25447 * 21 7 6 23 23 H 1.09007 * 109.47087 * 301.09363 * 1 2 3 24 24 H 1.08999 * 109.46876 * 61.09676 * 1 2 3 25 25 H 1.09004 * 109.47264 * 181.09841 * 1 2 3 26 26 H 1.09002 * 109.47475 * 159.78042 * 3 2 1 27 27 H 1.08994 * 109.47036 * 279.77908 * 3 2 1 28 28 H 1.09000 * 109.47075 * 39.78169 * 3 2 1 29 29 H 1.09005 * 109.51849 * 319.10155 * 4 2 1 30 30 H 1.08993 * 109.51943 * 79.21072 * 4 2 1 31 31 H 1.08997 * 109.96404 * 201.87777 * 5 4 2 32 32 H 1.09004 * 109.55410 * 81.15897 * 5 4 2 33 33 H 1.09007 * 110.17986 * 343.11070 * 6 5 4 34 34 H 1.09000 * 110.18068 * 221.37495 * 6 5 4 35 35 H 1.08000 * 124.58962 * 0.02562 * 11 10 8 36 36 H 1.08997 * 109.47193 * 239.95774 * 14 13 12 37 37 H 0.96696 * 113.99742 * 299.99529 * 15 14 13 38 38 H 1.07994 * 123.46131 * 180.02562 * 20 13 12 39 39 H 1.09001 * 109.85876 * 183.74991 * 21 7 6 40 40 H 1.09001 * 109.85557 * 304.69502 * 21 7 6 41 41 H 1.09000 * 109.51129 * 57.37412 * 22 21 7 42 42 H 1.08999 * 109.50856 * 177.52161 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4698 1.7614 0.0000 4 6 2.4724 -0.8525 -1.5485 5 6 3.9390 -1.2850 -1.3483 6 6 4.6520 -0.1898 -0.5646 7 7 4.7483 -0.6765 0.8030 8 6 5.7454 -1.5414 1.0751 9 8 6.4633 -1.9434 0.1792 10 6 5.9660 -1.9993 2.4564 11 6 7.1843 -1.9992 3.0611 12 16 7.0693 -2.5907 4.6555 13 6 5.3405 -2.8571 4.5120 14 6 4.4641 -3.4125 5.6050 15 8 3.4528 -2.4584 5.9356 16 14 5.5004 -3.7666 7.1122 17 1 6.1390 -2.5102 7.5801 18 1 4.6368 -4.3132 8.1895 19 1 6.5513 -4.7579 6.7686 20 6 4.9118 -2.5006 3.3071 21 6 3.8869 -0.3239 1.8811 22 6 2.4670 -0.8470 1.5339 23 1 -0.3633 0.5308 0.8801 24 1 -0.3633 0.4967 -0.8997 25 1 -0.3634 -1.0275 0.0197 26 1 3.4999 1.7909 0.3552 27 1 2.4231 2.1617 -1.0127 28 1 1.8414 2.3621 0.6576 29 1 1.8569 -1.7299 -1.7474 30 1 2.4093 -0.1647 -2.3917 31 1 4.4227 -1.4196 -2.3158 32 1 3.9706 -2.2191 -0.7873 33 1 4.0722 0.7328 -0.5954 34 1 5.6477 -0.0214 -0.9748 35 1 8.1001 -1.6672 2.5948 36 1 3.9954 -4.3346 5.2616 37 1 3.7985 -1.6117 6.2497 38 1 3.8808 -2.5773 2.9951 39 1 4.2377 -0.7887 2.8025 40 1 3.8650 0.7596 1.9983 41 1 2.5069 -1.9229 1.3641 42 1 1.7882 -0.6328 2.3594 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915400_6894386.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 18:51:12 Heat of formation + Delta-G solvation = -41.058673 kcal Electronic energy + Delta-G solvation = -22983.069029 eV Core-core repulsion = 19793.579304 eV Total energy + Delta-G solvation = -3189.489725 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 313.108 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.84644 -38.97920 -37.80617 -37.17802 -34.35017 -31.78886 -31.03540 -29.22928 -28.75991 -27.54131 -26.87978 -25.12929 -23.63860 -22.42905 -21.46341 -19.93928 -18.92836 -18.09548 -17.69435 -17.39725 -16.31969 -16.16729 -15.93450 -15.52138 -15.24152 -15.07229 -14.74893 -14.56507 -14.34599 -14.17500 -13.81632 -13.69597 -13.63359 -13.51074 -13.48093 -13.15959 -12.82281 -12.66141 -12.59349 -12.49633 -12.28536 -12.18729 -11.96538 -11.80247 -11.66354 -10.98477 -10.75691 -10.53203 -10.51680 -10.45809 -9.97439 -9.67945 -9.37365 -0.26729 0.34093 0.65119 0.92890 1.13776 1.42737 1.51873 1.80419 1.88859 1.91940 1.94909 1.95633 2.15922 2.68711 3.36256 3.59673 3.70975 3.94648 4.02341 4.09391 4.18339 4.31751 4.35167 4.42508 4.53984 4.59861 4.63305 4.71533 4.79535 4.82595 4.84345 4.86628 4.91014 4.92754 5.01067 5.10968 5.14795 5.24628 5.39669 5.46985 5.61774 5.66518 5.67216 6.26676 6.69612 7.04813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.461 4.461 2 Si 1.062 2.938 3 C -0.471 4.471 4 C -0.429 4.429 5 C -0.117 4.117 6 C 0.077 3.923 7 N -0.585 5.585 8 C 0.562 3.438 9 O -0.575 6.575 10 C -0.172 4.172 11 C -0.193 4.193 12 S 0.192 5.808 13 C -0.235 4.235 14 C -0.030 4.030 15 O -0.540 6.540 16 Si 0.909 3.091 17 H -0.231 1.231 18 H -0.240 1.240 19 H -0.244 1.244 20 C -0.081 4.081 21 C 0.089 3.911 22 C -0.438 4.438 23 H 0.074 0.926 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.134 0.866 34 H 0.072 0.928 35 H 0.173 0.827 36 H 0.136 0.864 37 H 0.392 0.608 38 H 0.168 0.832 39 H 0.111 0.889 40 H 0.092 0.908 41 H 0.075 0.925 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.120 3.045 4.460 6.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.568 4.568 2 Si 1.253 2.747 3 C -0.577 4.577 4 C -0.512 4.512 5 C -0.156 4.156 6 C -0.044 4.044 7 N -0.315 5.315 8 C 0.349 3.651 9 O -0.456 6.456 10 C -0.190 4.190 11 C -0.331 4.331 12 S 0.459 5.541 13 C -0.352 4.352 14 C -0.144 4.144 15 O -0.348 6.348 16 Si 0.730 3.270 17 H -0.154 1.154 18 H -0.163 1.163 19 H -0.167 1.167 20 C -0.110 4.110 21 C -0.033 4.033 22 C -0.524 4.524 23 H 0.093 0.907 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.095 0.905 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.151 0.849 34 H 0.090 0.910 35 H 0.190 0.810 36 H 0.153 0.847 37 H 0.241 0.759 38 H 0.186 0.814 39 H 0.128 0.872 40 H 0.110 0.890 41 H 0.093 0.907 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.608 1.988 5.691 6.239 hybrid contribution -0.567 0.508 -1.963 2.105 sum -2.175 2.497 3.728 4.986 Atomic orbital electron populations 1.26279 1.21612 1.04313 1.04606 0.78412 0.65388 0.65909 0.64983 1.26723 1.06134 1.19580 1.05267 1.26898 0.98942 1.07980 1.17372 1.21700 0.95927 0.97990 0.99944 1.22179 1.02838 0.99414 0.80004 1.46962 1.29618 1.43942 1.11002 1.18328 0.80287 0.78967 0.87478 1.90794 1.48856 1.57732 1.48220 1.20229 0.94014 1.09195 0.95568 1.25644 1.01514 1.04825 1.01073 1.83192 1.03768 1.59035 1.08107 1.24954 0.97868 1.11039 1.01321 1.24320 0.94195 0.95558 1.00300 1.86522 1.32798 1.28101 1.87333 0.86045 0.79318 0.83152 0.78447 1.15362 1.16318 1.16739 1.21218 0.99854 0.98543 0.91367 1.21738 0.89313 1.02213 0.90085 1.27018 1.00406 1.07705 1.17253 0.90691 0.91476 0.91594 0.90462 0.90731 0.90148 0.91159 0.90100 0.92580 0.92888 0.84861 0.90969 0.80964 0.84653 0.75872 0.81443 0.87174 0.89037 0.90665 0.87386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.96 8.65 113.37 0.98 2.94 16 2 Si 1.06 -6.70 10.05 68.60 0.69 -6.01 16 3 C -0.47 2.93 7.38 113.37 0.84 3.76 16 4 C -0.43 0.65 5.08 72.39 0.37 1.01 16 5 C -0.12 -0.38 5.59 30.80 0.17 -0.21 16 6 C 0.08 0.13 5.25 86.36 0.45 0.58 16 7 N -0.59 -1.05 2.19 -834.97 -1.83 -2.88 16 8 C 0.56 4.45 6.73 86.59 0.58 5.03 16 9 O -0.58 -9.36 16.26 -4.14 -0.07 -9.43 16 10 C -0.17 -0.68 4.97 -19.87 -0.10 -0.78 16 11 C -0.19 -0.49 10.79 67.30 0.73 0.23 16 12 S 0.19 -0.22 20.18 -56.49 -1.14 -1.36 16 13 C -0.23 0.49 5.68 24.51 0.14 0.63 16 14 C -0.03 0.14 2.95 71.24 0.21 0.35 16 15 O -0.54 2.61 12.85 -148.98 -1.91 0.70 16 16 Si 0.91 -3.39 26.19 68.60 1.80 -1.59 16 17 H -0.23 0.94 7.11 99.48 0.71 1.65 16 18 H -0.24 0.30 7.11 99.48 0.71 1.01 16 19 H -0.24 0.43 7.11 99.48 0.71 1.14 16 20 C -0.08 0.03 7.60 22.67 0.17 0.20 16 21 C 0.09 -0.33 5.21 87.90 0.46 0.12 16 22 C -0.44 2.53 4.46 72.76 0.32 2.86 16 23 H 0.07 -0.38 7.96 -2.38 -0.02 -0.40 16 24 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 25 H 0.06 -0.22 7.96 -2.38 -0.02 -0.24 16 26 H 0.08 -0.48 4.91 -2.39 -0.01 -0.49 16 27 H 0.07 -0.44 7.96 -2.39 -0.02 -0.46 16 28 H 0.08 -0.56 7.96 -2.39 -0.02 -0.58 16 29 H 0.07 -0.05 7.97 -2.38 -0.02 -0.07 16 30 H 0.08 -0.20 7.97 -2.39 -0.02 -0.22 16 31 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.05 0.36 7.36 -2.38 -0.02 0.34 16 33 H 0.13 -0.47 2.84 -2.38 -0.01 -0.48 16 34 H 0.07 0.37 7.57 -2.39 -0.02 0.35 16 35 H 0.17 0.33 8.06 -2.91 -0.02 0.31 16 36 H 0.14 -0.84 7.96 -2.39 -0.02 -0.86 16 37 H 0.39 -4.43 8.70 -74.06 -0.64 -5.07 16 38 H 0.17 -0.41 6.35 -2.91 -0.02 -0.43 16 39 H 0.11 -0.44 3.62 -2.39 -0.01 -0.45 16 40 H 0.09 -0.64 6.56 -2.39 -0.02 -0.65 16 41 H 0.07 -0.29 7.54 -2.39 -0.02 -0.31 16 42 H 0.11 -0.94 7.96 -2.39 -0.02 -0.96 16 Total: 0.00 -14.69 332.73 4.01 -10.69 By element: Atomic # 1 Polarization: -8.00 SS G_CDS: 1.15 Total: -6.85 kcal Atomic # 6 Polarization: 11.42 SS G_CDS: 5.33 Total: 16.74 kcal Atomic # 7 Polarization: -1.05 SS G_CDS: -1.83 Total: -2.88 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: -1.98 Total: -8.73 kcal Atomic # 14 Polarization: -10.09 SS G_CDS: 2.49 Total: -7.60 kcal Atomic # 16 Polarization: -0.22 SS G_CDS: -1.14 Total: -1.36 kcal Total: -14.69 4.01 -10.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915400_6894386.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.369 kcal (2) G-P(sol) polarization free energy of solvation -14.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds