Wall clock time and date at job start Thu Mar 4 2021 18:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38341 * 119.85234 * 2 1 4 4 C 1.37976 * 120.14373 * 179.97438 * 3 2 1 5 5 C 1.50699 * 120.07445 * 180.02562 * 4 3 2 6 6 C 1.39555 * 119.85523 * 0.02562 * 4 3 2 7 7 C 1.47847 * 120.14871 * 180.02562 * 6 4 3 8 8 O 1.21550 * 120.00040 * 241.52378 * 7 6 4 9 9 N 1.34780 * 119.99811 * 61.24217 * 7 6 4 10 10 C 1.46269 * 122.81882 * 6.66518 * 9 7 6 11 11 C 1.45980 * 114.57951 * 79.18824 * 10 9 7 12 12 C 1.55346 * 108.91853 * 60.36075 * 11 10 9 13 13 Si 1.84149 * 109.12277 * 290.54799 * 12 11 10 14 14 C 1.86299 * 108.84492 * 207.39621 * 13 12 11 15 15 C 1.86305 * 108.84712 * 325.86219 * 13 12 11 16 16 C 1.88549 * 112.65994 * 86.57751 * 13 12 11 17 17 C 1.44481 * 122.82236 * 186.36779 * 9 7 6 18 18 C 1.39602 * 119.71062 * 0.28292 * 6 4 3 19 19 C 1.37938 * 119.85004 * 359.44467 * 18 6 4 20 20 C 1.50700 * 119.92540 * 180.25504 * 19 18 6 21 21 O 1.42904 * 109.46912 * 254.42998 * 20 19 18 22 22 Si 1.86293 * 109.47240 * 14.43024 * 20 19 18 23 23 H 1.48506 * 109.47176 * 64.31521 * 22 20 19 24 24 H 1.48504 * 109.47140 * 184.30960 * 22 20 19 25 25 H 1.48494 * 109.47336 * 304.31425 * 22 20 19 26 26 H 1.09006 * 109.46922 * 90.00128 * 1 2 3 27 27 H 1.08999 * 109.47656 * 209.99929 * 1 2 3 28 28 H 1.09005 * 109.47687 * 330.00274 * 1 2 3 29 29 H 1.07995 * 119.93084 * 359.97438 * 3 2 1 30 30 H 1.09004 * 109.46735 * 275.37794 * 5 4 3 31 31 H 1.08999 * 109.47653 * 35.37696 * 5 4 3 32 32 H 1.08994 * 109.47587 * 155.38531 * 5 4 3 33 33 H 1.08999 * 108.46505 * 200.51382 * 10 9 7 34 34 H 1.09002 * 108.46549 * 318.03774 * 10 9 7 35 35 H 1.09002 * 109.56249 * 180.18846 * 11 10 9 36 36 H 1.08995 * 109.56704 * 300.41214 * 11 10 9 37 37 H 1.09000 * 109.53180 * 50.44483 * 12 11 10 38 38 H 1.09002 * 109.52443 * 170.58625 * 12 11 10 39 39 H 1.09001 * 109.47470 * 60.00411 * 14 13 12 40 40 H 1.09003 * 109.47121 * 180.02562 * 14 13 12 41 41 H 1.09008 * 109.47293 * 300.00000 * 14 13 12 42 42 H 1.08994 * 109.47092 * 37.14536 * 15 13 12 43 43 H 1.09001 * 109.46813 * 157.14466 * 15 13 12 44 44 H 1.09002 * 109.46539 * 277.14544 * 15 13 12 45 45 H 1.08998 * 110.07812 * 80.92305 * 16 13 12 46 46 H 1.08998 * 110.07710 * 202.41723 * 16 13 12 47 47 H 1.09005 * 109.88816 * 50.59858 * 17 9 7 48 48 H 1.08994 * 109.89235 * 171.71160 * 17 9 7 49 49 H 1.08000 * 120.07466 * 179.69865 * 18 6 4 50 50 H 1.09007 * 109.46911 * 134.43667 * 20 19 18 51 51 H 0.96700 * 113.99798 * 60.00062 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1956 1.1999 0.0000 4 6 3.5753 1.2069 0.0005 5 6 4.3238 2.5148 0.0011 6 6 4.2762 0.0001 0.0005 7 6 5.7546 0.0000 0.0017 8 8 6.3631 -0.5015 -0.9234 9 7 6.4277 0.5611 1.0257 10 6 5.7658 1.0595 2.2311 11 6 5.4009 0.0257 3.1950 12 6 6.6893 -0.7083 3.6583 13 14 7.3510 -1.7065 2.2594 14 6 8.2993 -3.1543 2.9490 15 6 5.9228 -2.3493 1.2503 16 6 8.4907 -0.7128 1.1331 17 6 7.8643 0.7152 1.0278 18 6 3.5752 -1.2072 -0.0060 19 6 2.1958 -1.2002 -0.0008 20 6 1.4374 -2.5024 -0.0020 21 8 0.8803 -2.7279 -1.2985 22 14 2.5963 -3.8964 0.4270 23 1 3.0946 -3.7168 1.8144 24 1 1.8742 -5.1900 0.3241 25 1 3.7440 -3.8938 -0.5153 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3635 0.8900 0.5138 29 1 1.6520 2.1331 -0.0004 30 1 4.4211 2.8782 -1.0220 31 1 3.7769 3.2463 0.5960 32 1 5.3150 2.3661 0.4295 33 1 6.4313 1.7697 2.7218 34 1 4.8591 1.5866 1.9342 35 1 4.9130 0.4844 4.0551 36 1 4.7215 -0.6864 2.7269 37 1 7.4348 0.0243 3.9678 38 1 6.4535 -1.3645 4.4961 39 1 7.6346 -3.7674 3.5577 40 1 8.6962 -3.7525 2.1288 41 1 9.1223 -2.7899 3.5639 42 1 5.1397 -1.5925 1.2059 43 1 6.2650 -2.5779 0.2410 44 1 5.5284 -3.2536 1.7139 45 1 9.4881 -0.6530 1.5686 46 1 8.5401 -1.1763 0.1478 47 1 8.1878 1.1885 0.1007 48 1 8.1712 1.3201 1.8810 49 1 4.1116 -2.1445 -0.0109 50 1 0.6355 -2.4565 0.7350 51 1 1.5380 -2.7801 -2.0055 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915400_9599494.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 18:51:43 Heat of formation + Delta-G solvation = -45.858140 kcal Electronic energy + Delta-G solvation = -30010.849157 eV Core-core repulsion = 26420.923827 eV Total energy + Delta-G solvation = -3589.925330 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.183 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.30413 -40.34829 -37.98565 -37.73913 -34.73455 -34.19697 -33.55586 -31.11796 -29.85077 -29.21825 -28.53024 -28.12124 -27.04707 -25.67474 -24.56221 -23.20774 -22.54340 -21.94002 -19.95935 -18.51782 -18.21557 -17.46040 -17.05710 -16.55922 -16.43066 -16.29739 -15.82101 -15.58653 -15.18883 -14.98443 -14.75999 -14.65282 -14.45800 -14.41980 -14.03002 -13.90336 -13.80637 -13.79024 -13.58142 -13.43205 -13.23788 -13.10599 -13.07396 -12.78642 -12.75580 -12.65483 -12.49771 -12.29652 -12.14390 -12.10808 -11.89160 -11.74711 -11.54143 -10.95373 -10.75132 -10.50874 -10.47807 -10.43486 -9.83896 -9.80932 -9.55283 -0.06857 0.15637 1.03862 1.26344 1.34820 1.44484 1.71460 1.76375 1.88511 1.95280 2.02323 2.49761 2.68445 3.36529 3.42508 3.62789 3.72088 3.80562 3.90606 4.06466 4.16031 4.21230 4.25429 4.38222 4.49300 4.51722 4.55675 4.58409 4.60066 4.63284 4.64810 4.67027 4.69600 4.72047 4.73096 4.85136 4.87392 4.90866 4.94261 4.95908 5.05098 5.13439 5.13957 5.22710 5.29474 5.32730 5.37926 5.41822 5.44870 5.47978 5.53798 5.65209 5.84665 6.32571 6.56791 7.02232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.033 4.033 3 C -0.123 4.123 4 C -0.043 4.043 5 C -0.139 4.139 6 C -0.147 4.147 7 C 0.582 3.418 8 O -0.565 6.565 9 N -0.604 5.604 10 C 0.077 3.923 11 C -0.135 4.135 12 C -0.400 4.400 13 Si 1.034 2.966 14 C -0.461 4.461 15 C -0.508 4.508 16 C -0.431 4.431 17 C 0.115 3.885 18 C -0.105 4.105 19 C -0.137 4.137 20 C -0.060 4.060 21 O -0.543 6.543 22 Si 0.932 3.068 23 H -0.243 1.243 24 H -0.262 1.262 25 H -0.269 1.269 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.156 0.844 30 H 0.073 0.927 31 H 0.102 0.898 32 H 0.082 0.918 33 H 0.118 0.882 34 H 0.089 0.911 35 H 0.104 0.896 36 H 0.054 0.946 37 H 0.100 0.900 38 H 0.084 0.916 39 H 0.066 0.934 40 H 0.055 0.945 41 H 0.077 0.923 42 H 0.090 0.910 43 H 0.051 0.949 44 H 0.061 0.939 45 H 0.093 0.907 46 H 0.054 0.946 47 H 0.058 0.942 48 H 0.128 0.872 49 H 0.130 0.870 50 H 0.138 0.862 51 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.928 5.909 6.288 8.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.033 4.033 3 C -0.140 4.140 4 C -0.043 4.043 5 C -0.195 4.195 6 C -0.150 4.150 7 C 0.372 3.628 8 O -0.444 6.444 9 N -0.337 5.337 10 C -0.044 4.044 11 C -0.173 4.173 12 C -0.489 4.489 13 Si 1.226 2.774 14 C -0.567 4.567 15 C -0.610 4.610 16 C -0.516 4.516 17 C -0.007 4.007 18 C -0.124 4.124 19 C -0.137 4.137 20 C -0.173 4.173 21 O -0.350 6.350 22 Si 0.758 3.242 23 H -0.166 1.166 24 H -0.186 1.186 25 H -0.194 1.194 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.102 0.898 29 H 0.174 0.826 30 H 0.091 0.909 31 H 0.120 0.880 32 H 0.101 0.899 33 H 0.136 0.864 34 H 0.107 0.893 35 H 0.122 0.878 36 H 0.073 0.927 37 H 0.119 0.881 38 H 0.103 0.897 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.096 0.904 42 H 0.108 0.892 43 H 0.070 0.930 44 H 0.081 0.919 45 H 0.112 0.888 46 H 0.073 0.927 47 H 0.077 0.923 48 H 0.146 0.854 49 H 0.148 0.852 50 H 0.156 0.844 51 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -1.600 4.980 6.305 8.192 hybrid contribution 0.577 -0.544 -1.087 1.345 sum -1.023 4.435 5.219 6.925 Atomic orbital electron populations 1.20937 0.89110 1.04025 1.03379 1.20162 0.97473 0.91638 0.94051 1.21207 0.92732 0.98813 1.01296 1.20162 0.94290 0.94122 0.95759 1.21301 1.01205 0.93305 1.03739 1.19678 0.92352 0.94554 1.08438 1.18108 0.87305 0.76138 0.81241 1.90787 1.70417 1.45734 1.37431 1.47632 1.08511 1.60020 1.17503 1.20836 1.01009 0.97783 0.84810 1.20837 0.97864 0.98816 0.99776 1.26168 1.02446 1.08508 1.11788 0.78806 0.65478 0.66639 0.66518 1.26310 1.09168 1.14895 1.06363 1.27640 1.16847 1.07137 1.09426 1.27522 1.09997 1.04474 1.09639 1.21706 0.78231 0.96970 1.03803 1.21575 0.94361 0.97903 0.98522 1.20102 0.92543 0.96597 1.04493 1.24717 1.04398 0.98209 0.89932 1.86479 1.37648 1.94630 1.16206 0.86007 0.77825 0.78707 0.81652 1.16622 1.18621 1.19420 0.90417 0.90502 0.89754 0.82625 0.90874 0.87972 0.89931 0.86425 0.89272 0.87809 0.92705 0.88127 0.89704 0.91450 0.92553 0.90358 0.89198 0.93000 0.91950 0.88800 0.92666 0.92329 0.85414 0.85245 0.84432 0.76556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.42 9.50 71.23 0.68 1.10 16 2 C -0.03 0.00 5.89 -19.81 -0.12 -0.11 16 3 C -0.12 0.20 9.36 22.23 0.21 0.40 16 4 C -0.04 -0.02 4.95 -19.61 -0.10 -0.12 16 5 C -0.14 0.53 8.46 71.24 0.60 1.14 16 6 C -0.15 -0.79 4.27 -20.09 -0.09 -0.88 16 7 C 0.58 4.30 2.88 86.79 0.25 4.55 16 8 O -0.56 -9.07 15.13 -3.87 -0.06 -9.13 16 9 N -0.60 -0.02 0.78 -836.77 -0.66 -0.68 16 10 C 0.08 -0.47 3.74 84.27 0.32 -0.16 16 11 C -0.13 0.73 5.51 29.25 0.16 0.89 16 12 C -0.40 2.19 4.72 72.79 0.34 2.53 16 13 Si 1.03 -0.33 9.96 68.60 0.68 0.35 16 14 C -0.46 -0.60 8.65 113.37 0.98 0.38 16 15 C -0.51 -3.32 4.93 113.37 0.56 -2.76 16 16 C -0.43 -0.64 4.99 73.12 0.37 -0.28 16 17 C 0.12 -0.16 5.75 87.90 0.51 0.35 16 18 C -0.11 -0.65 6.89 22.53 0.16 -0.50 16 19 C -0.14 -0.36 5.26 -19.90 -0.10 -0.46 16 20 C -0.06 -0.05 2.02 71.24 0.14 0.09 16 21 O -0.54 -0.95 12.76 -148.98 -1.90 -2.86 16 22 Si 0.93 3.72 25.29 68.60 1.73 5.45 16 23 H -0.24 -0.95 7.11 99.48 0.71 -0.25 16 24 H -0.26 -1.53 7.11 99.48 0.71 -0.82 16 25 H -0.27 -2.05 6.53 99.48 0.65 -1.40 16 26 H 0.08 -0.20 8.14 -2.38 -0.02 -0.22 16 27 H 0.08 -0.30 6.24 -2.39 -0.01 -0.32 16 28 H 0.08 -0.57 8.08 -2.38 -0.02 -0.59 16 29 H 0.16 -1.04 8.06 -2.91 -0.02 -1.06 16 30 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 31 H 0.10 -0.89 8.12 -2.39 -0.02 -0.91 16 32 H 0.08 -0.32 4.42 -2.39 -0.01 -0.33 16 33 H 0.12 -1.40 7.17 -2.39 -0.02 -1.42 16 34 H 0.09 -0.62 4.38 -2.39 -0.01 -0.63 16 35 H 0.10 -0.91 8.14 -2.39 -0.02 -0.93 16 36 H 0.05 -0.09 5.74 -2.39 -0.01 -0.10 16 37 H 0.10 -0.92 7.90 -2.39 -0.02 -0.94 16 38 H 0.08 -0.47 7.95 -2.39 -0.02 -0.49 16 39 H 0.07 0.08 7.96 -2.39 -0.02 0.06 16 40 H 0.06 0.20 7.96 -2.39 -0.02 0.18 16 41 H 0.08 -0.06 7.96 -2.38 -0.02 -0.08 16 42 H 0.09 0.50 0.87 -2.39 0.00 0.49 16 43 H 0.05 0.61 6.94 -2.39 -0.02 0.60 16 44 H 0.06 0.36 7.80 -2.39 -0.02 0.35 16 45 H 0.09 -0.19 8.00 -2.39 -0.02 -0.21 16 46 H 0.05 0.46 7.42 -2.39 -0.02 0.44 16 47 H 0.06 0.10 8.14 -2.38 -0.02 0.08 16 48 H 0.13 -1.17 7.17 -2.39 -0.02 -1.19 16 49 H 0.13 1.09 2.34 -2.91 -0.01 1.08 16 50 H 0.14 -0.40 6.53 -2.38 -0.02 -0.41 16 51 H 0.39 -0.95 8.70 -74.06 -0.64 -1.60 16 Total: 0.00 -17.17 362.73 5.67 -11.50 By element: Atomic # 1 Polarization: -11.81 SS G_CDS: 1.00 Total: -10.81 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: 4.86 Total: 6.16 kcal Atomic # 7 Polarization: -0.02 SS G_CDS: -0.66 Total: -0.68 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: -1.96 Total: -11.99 kcal Atomic # 14 Polarization: 3.39 SS G_CDS: 2.42 Total: 5.81 kcal Total: -17.17 5.67 -11.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915400_9599494.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.356 kcal (2) G-P(sol) polarization free energy of solvation -17.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds